From 58896628a54cbb51d19cea2aa78ac870ead869f1 Mon Sep 17 00:00:00 2001 From: Louis Bergelson Date: Fri, 8 Dec 2023 10:58:53 -0500 Subject: [PATCH] bleh --- .../tools/genomicsdb/GenomicsDBImportIntegrationTest.java | 2 +- .../hellbender/tools/GenomicsDBImport/azureSampleNameMap.txt | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java index 72c9967af10..a980dad2426 100644 --- a/src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java +++ b/src/test/java/org/broadinstitute/hellbender/tools/genomicsdb/GenomicsDBImportIntegrationTest.java @@ -415,7 +415,7 @@ public void testInvalidArgumentCombinationsWithAvoidNio(ArgumentsBuilder args, C @Test(groups={"cloud","azure"}) public void testImportFromAzure(){ final String workspace = createTempDir("genomicsdb-tests-").getAbsolutePath() + "/workspace"; - String SAS_TOKEN="?sv=2021-12-02&spr=https&st=2023-12-06T15%3A33%3A44Z&se=2023-12-06T23%3A48%3A44Z&sr=c&sp=racwdlt&sig=l%2Fk52QCEiVnC2cdbYKhTR4j6g0vxVnQv9hIpJn%2B3b9E%3D&rscd=117850515659045301394"; + String SAS_TOKEN="put a sas token in me"; final String sample = "NA19625"; final String azLocation = "az://lzb25a77f5eadb0fa72a2ae7.blob.core.windows.net/sc-62528cd7-3299-4440-8c17-10f458e589d3/NA19625.g.vcf.gz"; String sampleMapText = String.format("%s\t%s\n", sample, azLocation); diff --git a/src/test/resources/org/broadinstitute/hellbender/tools/GenomicsDBImport/azureSampleNameMap.txt b/src/test/resources/org/broadinstitute/hellbender/tools/GenomicsDBImport/azureSampleNameMap.txt index 691a08185f0..6d2f0566d63 100644 --- a/src/test/resources/org/broadinstitute/hellbender/tools/GenomicsDBImport/azureSampleNameMap.txt +++ b/src/test/resources/org/broadinstitute/hellbender/tools/GenomicsDBImport/azureSampleNameMap.txt @@ -1 +1 @@ -NA19625 az://sc-62528cd7-3299-4440-8c17-10f458e589d3@lzb25a77f5eadb0fa72a2ae7.blob.core.windows.net/NA19625.g.vcf.gz +NA19625 az://sc-62528cd7-3299-4440-8c17-10f458e589d3@lzb25a77f5eadb0fa72a2ae7.blob.core.windows.net/NA19625.g.vcf.gz \ No newline at end of file