New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Update the strand artifact filter #4500

Closed

3 tasks

takutosato opened this issue Mar 6, 2018 · 0 comments · Fixed by #5688

Closed

3 tasks

Update the strand artifact filter #4500

takutosato opened this issue Mar 6, 2018 · 0 comments · Fixed by #5688

Assignees

Labels

Mutect

Contributor

takutosato commented Mar 6, 2018

The new model must

Work for high depth low allele fraction site
Handle the cases where both ref and alt reads are strand biased, not just alt reads
Beat the model based on Fisher's exact test

takutosato self-assigned this

takutosato added the Mutect label

davidbenjamin mentioned this issue

Overhaul of Mutect2 filtering #5688

Merged

davidbenjamin closed this as completed in #5688

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment