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Force mates to share haplotypes in Mutect2 somatic likelihoods model #5085

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davidbenjamin opened this issue Aug 3, 2018 · 0 comments · Fixed by #5831
Closed

Force mates to share haplotypes in Mutect2 somatic likelihoods model #5085

davidbenjamin opened this issue Aug 3, 2018 · 0 comments · Fixed by #5831
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enhancement Mutect
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Mutect 3

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@davidbenjamin
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The model currently gives each read an independent latent variable indicating which haplotype it was derived from. This latent variable should be a property of fragments, not reads.
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enhancement Mutect
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Mutect2 forces mates to share their haplotype broadinstitute/gatk
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@davidbenjamin