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Add more test cases for the errors seen in issue #6289
Specifically we should add both more unit tests and integration tests.
One variant that should be added in integration tests is the following:
##fileformat=VCFv4.1
##contig=<ID=chr9,length=138394717>
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Sample
chr9 67726241 . TCA TCACACA,TCACACACA 182 PASS . GT ./.
The issue with adding more tests is that we don't have the full Funcotator datasources in our git-lfs repo because of size concerns. To add tests we'll need to add more intervals to our datasources to support the variants' loci, or create variants in the regions we already cover.
The text was updated successfully, but these errors were encountered:
Add more test cases for the errors seen in issue #6289
Specifically we should add both more unit tests and integration tests.
One variant that should be added in integration tests is the following:
The issue with adding more tests is that we don't have the full Funcotator datasources in our
git-lfs
repo because of size concerns. To add tests we'll need to add more intervals to our datasources to support the variants' loci, or create variants in the regions we already cover.The text was updated successfully, but these errors were encountered: