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Docker installation - import studies example not working (google group) #61

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n1zea144 opened this issue Oct 8, 2024 · 1 comment
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@n1zea144
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n1zea144 commented Oct 8, 2024

A google group user has reported that the docker importer is not working after following step-by-step docker installation. User reports that there is a problem with urllib3. Based on stacktrace, looks like there may be an issue with validateData.py.

google group thread

Running 3/0
⠿ Container cbioportal-database-container Running 0.0s
⠿ Container cbioportal-session-database-container Running 0.0s
⠿ Container cbioportal-session-container Running 0.0s
Traceback (most recent call last):
File "/usr/local/bin/metaImport.py", line 29, in
from . import validateData
File "/core/scripts/importer/validateData.py", line 41, in
import requests
File "/usr/local/lib/python3.12/dist-packages/requests/init.py", line 43, in
import urllib3
File "/usr/local/lib/python3.12/dist-packages/urllib3/init.py", line 8, in
from .connectionpool import (
File "/usr/local/lib/python3.12/dist-packages/urllib3/connectionpool.py", line 11, in
from .exceptions import (
File "/usr/local/lib/python3.12/dist-packages/urllib3/exceptions.py", line 2, in
from .packages.six.moves.http_client import (
ModuleNotFoundError: No module named 'urllib3.packages.six.moves'

@n1zea144 n1zea144 added the bug Something isn't working label Oct 8, 2024
@Phae-atwork
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Just thought i'd add some extra weight to the issue of packages in the container being broken .
i tried to deploy a newer version as it seems 6.0.15 is a bit old now.
it fixed this immediate problem, but 6.0.19 had issues of it's own with imports.
(connectivity to mariadb)

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