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Nunes, Luis et al. Prognostic genome and transcriptome signatures in colorectal cancers. Nature 2024 #2051

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LuisAlbertoSantosNunes opened this issue Aug 8, 2024 · 1 comment
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emailed-author Data missing for curation; contacted author

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@LuisAlbertoSantosNunes
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https://doi.org/10.1038/s41586-024-07769-3

Please keep this checklist for curation of a new study.

  • create an issue on datahub before curating a study (one issue per study) and copy this checklist to the issue tracker
  • List information of the dataset/paper in the issue, e.g. pmid, paper link, suppl file link
  • Document the curation process, e.g. how and by whom the data was transformed
  • Follow the data checklist
  • Create a pull request to datahub once the data is curated
  • Push to triage portal
  • Import into msk and public portal database
  • Update the default quick select study list see options for selecting tcga + non-tcga studies cbioportal#5831 (only for studies that are not overlapping with existing ones; only for human tumors, not cell lines)
  • Update cBioPortal news
@LuisAlbertoSantosNunes
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Clinicalpathological data: Supplementary Table 1
Short variants: EVA accession number ERZ17755300 (https://www.ebi.ac.uk/ena/browser/view/ERZ17755300)
Structural variants: EVA accession number ERZ17755333 (https://www.ebi.ac.uk/ena/browser/view/ERZ17755333)
Copy number variants: EVA accession number ERZ17755346 (https://www.ebi.ac.uk/ena/browser/view/ERZ17755346)
Expression data: ArrayExpress accession number E-MTAB-12862 (https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-12862)

@sbabyanusha sbabyanusha added the emailed-author Data missing for curation; contacted author label Sep 11, 2024
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