Data issue for study: coadread_cass_2020

[jmtang2018]

We are trying to import coadread_cass_2020 into our private installation of cbioportal and getting this error

ERROR: data_clinical_patient.txt: lines [74, 108]: columns [18, 19]: Value of numeric attribute is not a real number; values encountered: ['<0.5', '<2.0']

Column 18 and 19 on data_clinical_sample.txt are defined as NUMBER but column 18 contains [<0.5, > 1500] and column 19 contains [<2, <2.0, >1200]. Maybe consider changing to a STRING? Let us know if we should open a PR instead?

Thanks,
Jeff

[rmadupuri]

Hi @jmtang2018, thank you for reporting this. The same issue has been addressed in the discussion: #2054

[jmtang2018]

I just imported again. I don't think the issue have been resolved.
https://media.githubusercontent.com/media/cBioPortal/datahub/refs/heads/master/public/coadread_cass_2020/data_clinical_patient.txt