diff --git a/public/nst_nfosi_2022/data_clinical_sample.txt b/public/nst_nfosi_2022/data_clinical_sample.txt deleted file mode 100644 index d2b0a6f2e7..0000000000 --- a/public/nst_nfosi_2022/data_clinical_sample.txt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:1e8ed3c18ebf34eda460d324f5e6421cf5305caf641bde36802ebe6c566ccb33 -size 2147 diff --git a/public/nst_nfosi_2022/meta_study.txt b/public/nst_nfosi_2022/meta_study.txt deleted file mode 100644 index 5203cd16e8..0000000000 --- a/public/nst_nfosi_2022/meta_study.txt +++ /dev/null @@ -1,8 +0,0 @@ -cancer_study_identifier: nst_nfosi_2022 -type_of_cancer: nst -name: Nerve Sheath Tumors (John Hopkins, Sci Data 2020) -description: Whole-exome sequencing of 18 patients with Nerve Sheath Tumors and their matched normals. The data is contributed by John Hopkins University researchers funded by the Neurofibromatosis Therapeutic Acceleration Program (NTAP). The reprocessing of the raw data is managed by the NF Open Science Initiative (NF Data Portal). -citation: Pollard et al. Sci Data 2020 -pmid: 32561749 -reference_genome: hg38 -groups: PUBLIC diff --git a/public/nst_nfosi_2022/LICENSE b/public/nst_nfosi_ntap/LICENSE similarity index 100% rename from public/nst_nfosi_2022/LICENSE rename to public/nst_nfosi_ntap/LICENSE diff --git a/public/nst_nfosi_2022/case_lists/cases_all.txt b/public/nst_nfosi_ntap/case_lists/cases_all.txt similarity index 89% rename from public/nst_nfosi_2022/case_lists/cases_all.txt rename to public/nst_nfosi_ntap/case_lists/cases_all.txt index b5f16702c3..363a1d2410 100644 --- a/public/nst_nfosi_2022/case_lists/cases_all.txt +++ b/public/nst_nfosi_ntap/case_lists/cases_all.txt @@ -1,5 +1,5 @@ -cancer_study_identifier: nst_nfosi_2022 -stable_id: nst_nfosi_2022_all +cancer_study_identifier: nst_nfosi_ntap +stable_id: nst_nfosi_ntap_all case_list_name: All samples case_list_description: All samples (19 samples) case_list_category: all_cases_in_study diff --git a/public/nst_nfosi_2022/case_lists/cases_sequenced.txt b/public/nst_nfosi_ntap/case_lists/cases_sequenced.txt similarity index 89% rename from public/nst_nfosi_2022/case_lists/cases_sequenced.txt rename to public/nst_nfosi_ntap/case_lists/cases_sequenced.txt index 387fe41c95..3c6255a2c0 100644 --- a/public/nst_nfosi_2022/case_lists/cases_sequenced.txt +++ b/public/nst_nfosi_ntap/case_lists/cases_sequenced.txt @@ -1,5 +1,5 @@ -cancer_study_identifier: nst_nfosi_2022 -stable_id: nst_nfosi_2022_sequenced +cancer_study_identifier: nst_nfosi_ntap +stable_id: nst_nfosi_ntap_sequenced case_list_name: Samples with mutation data case_list_description: Samples with mutation data (19 samples) case_list_category: all_cases_with_mutation_data diff --git a/public/nst_nfosi_2022/data_clinical_patient.txt b/public/nst_nfosi_ntap/data_clinical_patient.txt similarity index 100% rename from public/nst_nfosi_2022/data_clinical_patient.txt rename to public/nst_nfosi_ntap/data_clinical_patient.txt diff --git a/public/nst_nfosi_ntap/data_clinical_sample.txt b/public/nst_nfosi_ntap/data_clinical_sample.txt new file mode 100644 index 0000000000..39ccf81586 --- /dev/null +++ b/public/nst_nfosi_ntap/data_clinical_sample.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fcde815cc94ee8e1cb129d237c216f63d491413ef2b3c10ef8a1b4f97f18432a +size 1999 diff --git a/public/nst_nfosi_2022/data_mutations.txt b/public/nst_nfosi_ntap/data_mutations.txt similarity index 100% rename from public/nst_nfosi_2022/data_mutations.txt rename to public/nst_nfosi_ntap/data_mutations.txt diff --git a/public/nst_nfosi_2022/meta_clinical_patient.txt b/public/nst_nfosi_ntap/meta_clinical_patient.txt similarity index 72% rename from public/nst_nfosi_2022/meta_clinical_patient.txt rename to public/nst_nfosi_ntap/meta_clinical_patient.txt index 3a9e99c78d..f30a038ead 100644 --- a/public/nst_nfosi_2022/meta_clinical_patient.txt +++ b/public/nst_nfosi_ntap/meta_clinical_patient.txt @@ -1,4 +1,4 @@ -cancer_study_identifier: nst_nfosi_2022 +cancer_study_identifier: nst_nfosi_ntap genetic_alteration_type: CLINICAL datatype: PATIENT_ATTRIBUTES data_filename: data_clinical_patient.txt diff --git a/public/nst_nfosi_2022/meta_clinical_sample.txt b/public/nst_nfosi_ntap/meta_clinical_sample.txt similarity index 71% rename from public/nst_nfosi_2022/meta_clinical_sample.txt rename to public/nst_nfosi_ntap/meta_clinical_sample.txt index 3ef1bcd214..5021cc2bbe 100644 --- a/public/nst_nfosi_2022/meta_clinical_sample.txt +++ b/public/nst_nfosi_ntap/meta_clinical_sample.txt @@ -1,4 +1,4 @@ -cancer_study_identifier: nst_nfosi_2022 +cancer_study_identifier: nst_nfosi_ntap genetic_alteration_type: CLINICAL datatype: SAMPLE_ATTRIBUTES data_filename: data_clinical_sample.txt diff --git a/public/nst_nfosi_2022/meta_mutations.txt b/public/nst_nfosi_ntap/meta_mutations.txt similarity index 87% rename from public/nst_nfosi_2022/meta_mutations.txt rename to public/nst_nfosi_ntap/meta_mutations.txt index 79f2d6727b..1aaa645ddd 100644 --- a/public/nst_nfosi_2022/meta_mutations.txt +++ b/public/nst_nfosi_ntap/meta_mutations.txt @@ -1,4 +1,4 @@ -cancer_study_identifier: nst_nfosi_2022 +cancer_study_identifier: nst_nfosi_ntap genetic_alteration_type: MUTATION_EXTENDED datatype: MAF stable_id: mutations diff --git a/public/nst_nfosi_ntap/meta_study.txt b/public/nst_nfosi_ntap/meta_study.txt new file mode 100644 index 0000000000..ae9237676b --- /dev/null +++ b/public/nst_nfosi_ntap/meta_study.txt @@ -0,0 +1,8 @@ +cancer_study_identifier: nst_nfosi_ntap +type_of_cancer: nst +name: Nerve Sheath Tumors (John Hopkins, Sci Data 2020) +description: Whole-exome sequencing of 18 patients with matched Nerve Sheath tumor-normal samples. The data is contributed by John Hopkins University researchers funded by the Neurofibromatosis Therapeutic Acceleration Program (NTAP). The reprocessing of the raw data is managed by the NF Open Science Initiative (NF Data Portal). +citation: Pollard et al. Sci Data 2020 +pmid: 32561749 +reference_genome: hg38 +groups: PUBLIC