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ChangeLog
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commit 7b2454db7cfc952425b8673045f324066e314790
Author: cameronbracken <[email protected]>
Date: Thu Mar 15 00:43:00 2012 -0700
Modifications for check, rebuild vignette
.Rinstignore | 1 +
ChangeLog | 251 ++++++++++++++++++++
NAMESPACE | 2 +-
R/pgfSweaveDriver.R | 27 +-
inst/doc/Sweave.sty | 33 ---
inst/doc/fig-normalSweave.pdf | Bin 0 -> 4622 bytes
inst/doc/fig-pgfSweave-hist.pgf | 234 ++++++++++++++++++
inst/doc/fig-pgfSweave-tikz-hist.pdf | Bin 0 -> 28468 bytes
inst/doc/fig-pgfSweave-tikz-hist.tikz | 97 ++++++++
inst/doc/figs/fig-normalSweave.pdf | Bin 12554 -> 0 bytes
inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16274 -> 0 bytes
inst/doc/figs/fig-pgfSweave-hist.pgf | 248 -------------------
inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 35472 -> 0 bytes
inst/doc/figs/fig-pgfSweave-tikz-hist.tikz | 108 ---------
inst/doc/pgfSweave-example-tex.in | 17 +-
inst/doc/pgfSweave-example.pdf | Bin 77979 -> 77314 bytes
inst/doc/pgfSweave.Rnw | 59 ++---
inst/doc/pgfSweave.pdf | Bin 289790 -> 281270 bytes
inst/misc/vignette-src/Makefile | 14 +-
inst/misc/vignette-src/Sweave.sty | 33 ---
.../vignette-src/pgfSweave-vignette-source.Rnw | 4 +-
man/pgfSweaveDriver.Rd | 15 +-
22 files changed, 650 insertions(+), 493 deletions(-)
commit 8f00570ea40b0bba322c246e4e0c4333a96f8c50
Author: cameronbracken <[email protected]>
Date: Thu Mar 15 00:19:27 2012 -0700
Update NEWS and DESCRIPTION for new version 1.3.0
DESCRIPTION | 51 ++++++++++++++++++++++++++++++++++-----------------
NEWS | 14 +++++++++++++-
2 files changed, 47 insertions(+), 18 deletions(-)
commit 63652515e771b9e1e7a6a519cb07d1c07fb3a098
Merge: 9ec3a2d f339a64
Author: cameronbracken <[email protected]>
Date: Wed Mar 14 23:25:44 2012 -0700
Merge branch 'master' of github.com:cameronbracken/pgfSweave
commit 9ec3a2d0bcc0402a0b88025f18d3511815fcd61b
Author: cameronbracken <[email protected]>
Date: Wed Mar 14 23:23:02 2012 -0700
Roxegenize docs
NAMESPACE | 15 ++--
R/pgfSweave.R | 1 +
R/pgfSweaveDriver.R | 10 ++-
man/pgfSweave.Rd | 170 +++++++++++++++++++++++++++---------------------
man/pgfSweaveDriver.Rd | 157 ++++++++++++++++++++++++---------------------
5 files changed, 198 insertions(+), 155 deletions(-)
commit 184c07a447677a54341e92dea2494286f2372c04
Merge: cb36897 bf5b655
Author: cameronbracken <[email protected]>
Date: Wed Mar 14 22:38:04 2012 -0700
Merge branch 'docs'
commit cb3689772db07d3a8d65ecda639a7f7107495ea4
Author: cameronbracken <[email protected]>
Date: Wed Mar 14 22:18:45 2012 -0700
Fix link in docs, fixed GH-35
man/pgfSweaveDriver.Rd | 2 +-
1 files changed, 1 insertions(+), 1 deletions(-)
commit cea3c877827bc1a7b7b4e47548ee43fc4b75c814
Author: cameronbracken <[email protected]>
Date: Wed Mar 14 22:13:54 2012 -0700
Dont automatically install command line script, it is against the rules. Modify the install scrip to be called from a regular session so the user can install it themselves later.
NEWS | 7 ++++++-
R/pgfSweave.R | 4 ++++
exec/install-script.R | 7 +++----
src/Makevars | 6 ------
src/dummy.c | 8 --------
5 files changed, 13 insertions(+), 19 deletions(-)
commit 4d4f44bc633f840e61c0054dbf2d13f560ad5e52
Author: cameronbracken <[email protected]>
Date: Wed Mar 14 22:01:04 2012 -0700
Get rid of .onAttach, it didnt do anything and get rid of package loading in .onLoad
R/zzz.R | 14 --------------
1 files changed, 0 insertions(+), 14 deletions(-)
commit f339a643406dbb7a7ecd9ec9b249b02163543f35
Merge: 9cc0095 d5b04a6
Author: Cameron Bracken <[email protected]>
Date: Sun Feb 26 19:10:25 2012 -0800
Merge pull request #39 from psibre/master
xelatex example updates
commit d5b04a651d5fdab7704722c61660db5d56779c5e
Author: Ingmar Steiner <[email protected]>
Date: Mon Feb 13 13:03:03 2012 +0100
modified xelatex example further,
particularly for use with fontspec (practically ubiquitous in xelatex documents)
Note: the actual fonts used (Times, Courier) may not be available everywhere.
For details on the potential ae conflict of Sweave and fontspec, see, e.g., http://www.theresearchkitchen.com/archives/118
inst/example/pgfSweave-xelatex-example.Rnw | 31 +++++++++++++++++++--------
1 files changed, 22 insertions(+), 9 deletions(-)
commit 871fc2171ee70439dce79b3e93bf3f197e350dfd
Author: Ingmar Steiner <[email protected]>
Date: Mon Feb 13 11:49:52 2012 +0100
updated xelatex example and softened warning;
if xelatex is called with -8bit option, generated makefile is not malformed, and does not need to be hacked with sed or perl
see for example, http://tex.stackexchange.com/a/14776
inst/example/Makefile | 9 +++++++--
inst/example/pgfSweave-xelatex-example.Rnw | 5 ++---
2 files changed, 9 insertions(+), 5 deletions(-)
commit 9cc009512dd0968a17ba056deab5b56b55a58534
Author: cameronbracken <[email protected]>
Date: Thu Dec 1 14:51:54 2011 -0700
Importing cacheSweave doesnt work, need a dependency
DESCRIPTION | 2 +-
NAMESPACE | 3 +--
2 files changed, 2 insertions(+), 3 deletions(-)
commit 6e2d0a3858a883e87bc4d1648c917e7880d9b20c
Author: cameronbracken <[email protected]>
Date: Thu Dec 1 14:51:12 2011 -0700
Add support for figs.only option to Sweave (TRUE by defualt)
R/pgfSweaveDriver.R | 5 +++--
1 files changed, 3 insertions(+), 2 deletions(-)
commit 413d1d6404669a190c27541e6357feca7520f9f0
Author: cameronbracken <[email protected]>
Date: Mon Aug 22 12:39:35 2011 -0600
Add global option pgfSweaveNoHighlight to disable printing of highlight definitions (they are currently always printed.)
Set the options to any other value than NULL to disable printing of the definitions e.g. options(pgfSweaveNoHighlight=TRUE)
R/pgfSweaveDriver.R | 42 ++++++++++++++++++++++--------------------
1 files changed, 22 insertions(+), 20 deletions(-)
commit bf5b65532c9ed6f9f88d876fc2c88ecfc74cd0f2
Author: cameronbracken <[email protected]>
Date: Mon Aug 22 12:37:20 2011 -0600
Roxygenize docs
R/pgfSweave.R | 110 ++++++++++++++++++++++++++++++++++++++++++++++++++-
R/pgfSweaveDriver.R | 57 ++++++++++++++++++++++++++
2 files changed, 166 insertions(+), 1 deletions(-)
commit fc21a9d22861f6739d8765aa3330ca498093cfd0
Author: cameronbracken <[email protected]>
Date: Fri Jul 8 14:20:41 2011 -0600
Can now specify your installed PGF version in your .Rprofile to circumvent the check at startup, `options(pgfversion = "2.10")`; This gets the package load time down to a bare minimum, the rest of the time is from loading other packages:
$Rcpp
[1] 0.314
$parser
[1] 0.044
$codetools
[1] 0.029
$formatR
[1] 0.029
$filehash
[1] 0.094
$stashR
[1] 0.067
$tikzDevice
[1] 0.094
$highlight
[1] 0.088
$pgfSweave
[1] 0.044
packs <- c('Rcpp', 'parser', 'codetools', 'formatR', 'filehash',
'tikzDevice', 'highlight', 'stashR', 'pgfSweave')
ti <- list()
for(p in packs)
ti[[p]] <- system.time(suppressPackageStartupMessages(library(p,character.only=TRUE)))
R/zzz.R | 25 +++++++++++++++++++------
1 files changed, 19 insertions(+), 6 deletions(-)
commit 9264763b9dae55c032e23018001cb57fd6bcb83d
Author: cameronbracken <[email protected]>
Date: Fri Jul 8 13:16:17 2011 -0600
Move optparse to 'Enhances' and add a check for it in the command line
script.
DESCRIPTION | 4 +++-
exec/pgfsweave | 1 +
exec/pgfsweave-script.R | 3 ++-
3 files changed, 6 insertions(+), 2 deletions(-)
commit f1e4d03c3ab7e9014b6a22dd695f4cf5007a5649
Author: cameronbracken <[email protected]>
Date: Tue May 31 12:25:29 2011 -0600
Fix spacing bug for highlight=F, tidy=T, wasn't caught with previous spacing fixes, GH-31
R/pgfSweaveDriver.R | 3 ---
1 files changed, 0 insertions(+), 3 deletions(-)
commit 54e1c783f5162251c9eb2c7fed997cf931f43bc7
Merge: e13ae66 ec0225e
Author: cameronbracken <[email protected]>
Date: Sat May 28 17:39:22 2011 -0600
Merge branch 'master' of github.com:cameronbracken/pgfSweave
commit e13ae6680c28237ba79e509a1e95a4fea425ac3f
Author: cameronbracken <[email protected]>
Date: Sat May 28 17:22:17 2011 -0600
Fix typos in the vignette
ChangeLog | 110 ++++++++++++
inst/doc/figs/fig-normalSweave.pdf | Bin 2839 -> 12554 bytes
inst/doc/figs/fig-pgfSweave-hist.pgf | 180 +++++++++++---------
inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28507 -> 35472 bytes
inst/doc/figs/fig-pgfSweave-tikz-hist.tikz | 77 +++++----
inst/doc/pgfSweave-example-tex.in | 26 ++--
inst/doc/pgfSweave-example.pdf | Bin 78304 -> 77979 bytes
inst/doc/pgfSweave.Rnw | 58 +++---
inst/doc/pgfSweave.pdf | Bin 279712 -> 289790 bytes
.../vignette-src/pgfSweave-vignette-source.Rnw | 6 +-
10 files changed, 294 insertions(+), 163 deletions(-)
commit ec0225ef4a84f66a77023760ba1f3c742d68ad55
Merge: 29a4b9a 50566c1
Author: Cameron Bracken <[email protected]>
Date: Mon May 9 11:52:35 2011 -0700
Merge pull request #30 from lq/master
caching does not work properly when keep.source=TRUE
commit 29a4b9ae44804fda444c3f8fd4b04c94a1a84bce
Author: cameronbracken <[email protected]>
Date: Wed May 4 16:29:09 2011 -0600
Hidden option to access the `size` parameter to highlight, GH-28
R/pgfSweaveDriver.R | 4 +++-
1 files changed, 3 insertions(+), 1 deletions(-)
commit 50566c11734cb8719c0b33c06df7578711259a32
Author: Qiang Li <[email protected]>
Date: Wed May 4 01:11:42 2011 +0800
fixed: keep.source breaks cache
R/cacheSweaveUnexportedFunctions.R | 2 +-
1 files changed, 1 insertions(+), 1 deletions(-)
commit 0cdf5785592ee6b94a40aeb72ed91253cac51b37
Merge: c53f9f8 dada019
Author: Cameron Bracken <[email protected]>
Date: Thu Apr 28 17:15:15 2011 -0700
Merged pull request #26 from lq/master.
Highlight spacing
commit dada019de51c722bf81d06ccd079745b84849b9d
Author: Qiang Li <[email protected]>
Date: Tue Apr 19 18:56:48 2011 +0800
Removed hard newline_latex at the end of {Sinput}
Now the ugly hack \vspace{-\baselineskip} is avoided.
R/pgfSweaveDriver.R | 10 +++++++---
1 files changed, 7 insertions(+), 3 deletions(-)
commit 1e17cc8e5c3920426ae75e706ecd896c0d5d33be
Author: Qiang Li <[email protected]>
Date: Tue Apr 19 13:19:36 2011 +0800
R/pgfSweaveDriver.R: cancel out the effect of hard newline at the end of Hinput
Now we can define Schunk and Hinput based on trivlist, and Soutput based on
Verbatim, so that vertical spaces between text/chunk/text and code/output can
be individually set with \topsep, e.g.
\renewenvironment{Schunk}{\begin{trivlist}\item}{\end{trivlist}}
\RequirePackage{fancyvrb}
\renewenvironment{Hinput}{\setlength{\topsep}{0pt}\begin{trivlist}\item}
{\vspace{-\baselineskip}\end{trivlist}}
\RecustomVerbatimEnvironment{Soutput}{Verbatim}{listparameters={\setlength{\topsep}{\smallskipamount}}}
R/pgfSweaveDriver.R | 3 ++-
1 files changed, 2 insertions(+), 1 deletions(-)
commit e64011b2ed4a89d4592b9d67256ad786c1ca34fd
Author: Qiang Li <[email protected]>
Date: Tue Apr 19 03:08:06 2011 +0800
R/pgfSweaveDriver.R: Removed newline_latex() at the beginning of Sinput.
The {Sinput} environment should ensure the newline and determine the
surrounding space.
R/pgfSweaveDriver.R | 8 ++------
1 files changed, 2 insertions(+), 6 deletions(-)
commit 060c03c571f3a6caeaa116ad855476fb63041053
Author: Qiang Li <[email protected]>
Date: Mon Apr 18 22:52:05 2011 +0800
R/pgfSweaveDriver.R: Generates Hinput environments instead of Houtput.
Houtput seemed strange. It surrounds both input and output, so customization
would also affect the results. I made it a inner environment of Schunk just
like Sinput, and renamed it to Hinput accordingly.
R/pgfSweaveDriver.R | 27 +++++++--------------------
1 files changed, 7 insertions(+), 20 deletions(-)
commit c53f9f81905d1ded6a71ff5de151c0787d8903ec
Author: cameronbracken <[email protected]>
Date: Tue Apr 12 16:37:38 2011 -0600
Fix link in README.md, Issue 24
README.md | 2 +-
1 files changed, 1 insertions(+), 1 deletions(-)
commit 8a44f21d1315753295883332d57503624ae99b5c
Author: cameronbracken <[email protected]>
Date: Tue Apr 5 16:43:42 2011 -0600
Version 1.2.1
ChangeLog | 107 ++++++++++++++++
DESCRIPTION | 2 +-
inst/doc/figs/fig-normalSweave.pdf | Bin 12524 -> 2839 bytes
inst/doc/figs/fig-pgfSweave-hist.pgf | 185 ++++++++++++---------------
inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28559 -> 28507 bytes
inst/doc/figs/fig-pgfSweave-tikz-hist.tikz | 67 +++++------
inst/doc/pgfSweave-example-tex.in | 12 ++-
inst/doc/pgfSweave-example.pdf | Bin 76347 -> 78304 bytes
inst/doc/pgfSweave.Rnw | 2 +
inst/doc/pgfSweave.pdf | Bin 288573 -> 279712 bytes
inst/misc/vignette-src/Makefile | 3 +-
11 files changed, 234 insertions(+), 144 deletions(-)
commit b81ef0e742e77b7f6caaead783cfc2637f7be970
Author: cameronbracken <[email protected]>
Date: Tue Apr 5 16:43:31 2011 -0600
Update NEWS
NEWS | 3 +++
1 files changed, 3 insertions(+), 0 deletions(-)
commit e1b1d11fee5419f1747636461a5af7f46248826f
Merge: 629df4f 5536f8f
Author: cameronbracken <[email protected]>
Date: Tue Apr 5 16:26:46 2011 -0600
Merge branch 'rel-patch2'
commit 629df4f8c9925ccf1a970d10552153ff26123ced
Author: cameronbracken <[email protected]>
Date: Tue Apr 5 16:26:06 2011 -0600
Only try to call make if the makefile exists
R/pgfSweave.R | 12 ++++++------
1 files changed, 6 insertions(+), 6 deletions(-)
commit 5536f8f46e781bb2e8193dcbcbf2265b20612e34
Author: cameronbracken <[email protected]>
Date: Tue Apr 5 16:15:56 2011 -0600
Apply rel2.patch
R/pgfSweaveDriver.R | 23 +++++++++++++++++++++--
1 files changed, 21 insertions(+), 2 deletions(-)
commit d6159fa723942cc7ad361290114e555404430d2f
Author: cameronbracken <[email protected]>
Date: Tue Apr 5 16:05:14 2011 -0600
Slightly change message for re-run external chunks
R/pgfSweaveDriver.R | 2 +-
1 files changed, 1 insertions(+), 1 deletions(-)
commit edc5f628bb174fe19ae84884194863d7a1a41557
Author: cameronbracken <[email protected]>
Date: Tue Apr 5 15:50:57 2011 -0600
Update NEWS
NEWS | 5 +++--
1 files changed, 3 insertions(+), 2 deletions(-)
commit ff49d90675be7118283af2120c93499cf9c164cf
Author: cameronbracken <[email protected]>
Date: Tue Apr 5 15:48:58 2011 -0600
XeLaTeX example, see the warning in the file for directions on how to get around the bug in pgf
inst/example/pgfSweave-xelatex-example.Rnw | 72 ++++++++++++++++++++++++++++
1 files changed, 72 insertions(+), 0 deletions(-)
commit 2d57ccae18b14134aead7851da22cf8fade8d34a
Author: cameronbracken <[email protected]>
Date: Tue Apr 5 14:55:03 2011 -0600
Fix the internal caching layer so that external graphics are now properly recreated only when the chunk has changed; also fixes the external library dependency feature
R/pgfSweaveDriver.R | 21 +++++++++++----------
R/utilities.R | 2 +-
2 files changed, 12 insertions(+), 11 deletions(-)
commit 5fc6321fe08d009b07dc89314ab1f8dda0cb7d6f
Author: cameronbracken <[email protected]>
Date: Tue Apr 5 13:24:53 2011 -0600
Add chunk options 'width' and 'height' to the chunk digest; when chages are made to these options but not the chunk code itself, still regenerate the graphic
R/utilities.R | 2 +-
1 files changed, 1 insertions(+), 1 deletions(-)
commit 7aa7eb28373f601b1d65d09e7b1c2b543c1d3a5a
Author: cameronbracken <[email protected]>
Date: Mon Apr 4 14:45:24 2011 -0600
Add encoding to vignette for R 2.13
ChangeLog | 52 ++++++
inst/doc/figs/fig-normalSweave.pdf | Bin 12749 -> 12524 bytes
inst/doc/figs/fig-pgfSweave-hist.pgf | 186 +++++++++++---------
inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28614 -> 28559 bytes
inst/doc/figs/fig-pgfSweave-tikz-hist.tikz | 70 ++++----
inst/doc/pgfSweave-example-tex.in | 10 +-
inst/doc/pgfSweave-example.pdf | Bin 78284 -> 76347 bytes
inst/doc/pgfSweave.Rnw | 2 +
inst/doc/pgfSweave.pdf | Bin 327561 -> 288573 bytes
.../vignette-src/pgfSweave-vignette-source.Rnw | 2 +
10 files changed, 190 insertions(+), 132 deletions(-)
commit 354e7f790cbf28be8fee88dbc4ee61a349770182
Author: cameronbracken <[email protected]>
Date: Mon Apr 4 14:44:32 2011 -0600
Update News
NEWS | 10 ++++++++++
1 files changed, 10 insertions(+), 0 deletions(-)
commit 69700eb5e3bfbef6d743d1d719a5b663c799bc00
Author: cameronbracken <[email protected]>
Date: Sun Apr 3 21:02:43 2011 -0600
Remove null device code since it can cause problems with grid graphics
R/pgfSweaveDriver.R | 5 -----
1 files changed, 0 insertions(+), 5 deletions(-)
commit 1db2157b7f913a011f23c9ac8912b7b265ce983c
Author: cameronbracken <[email protected]>
Date: Sun Apr 3 17:21:07 2011 -0600
Bump version number, recompile vignette to only depend on PGF 2.00
ChangeLog | 51 ++++++
DESCRIPTION | 2 +-
inst/doc/figs/fig-normalSweave.pdf | Bin 2960 -> 12749 bytes
inst/doc/figs/fig-pgfSweave-hist.pgf | 188 +++++++++-----------
inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28559 -> 28614 bytes
inst/doc/figs/fig-pgfSweave-tikz-hist.tikz | 74 ++++----
inst/doc/pgfSweave-example-tex.in | 2 -
inst/doc/pgfSweave-example.pdf | Bin 78061 -> 78284 bytes
inst/doc/pgfSweave.Rnw | 21 +--
inst/doc/pgfSweave.pdf | Bin 281287 -> 327561 bytes
inst/misc/vignette-src/Makefile | 5 +-
.../vignette-src/pgfSweave-vignette-source.Rnw | 10 +-
12 files changed, 191 insertions(+), 162 deletions(-)
commit 21154a3acba563ecd2cb2586bb02dfad7acf0acb
Author: cameronbracken <[email protected]>
Date: Sun Apr 3 17:20:13 2011 -0600
Allow package to be installed if PGF 2.10 is not available but issue
message at startup.
R/zzz.R | 9 ++++++---
1 files changed, 6 insertions(+), 3 deletions(-)
commit 1443cf949766b3dcd598a6d94ef799e1abc74c6d
Author: cameronbracken <[email protected]>
Date: Sun Apr 3 17:17:55 2011 -0600
Dont include \tikzexternalfiledependsonfile command because it caused
figures to get recompiled every time. Only put in list and make command
the first time.
R/pgfSweaveDriver.R | 23 ++++++++++++++---------
1 files changed, 14 insertions(+), 9 deletions(-)
commit 103005f9ced1a9e07599f5625a1bd6456441473c
Author: cameronbracken <[email protected]>
Date: Sun Apr 3 17:16:20 2011 -0600
Do not run (pdf)latex initially when makefile exists
R/pgfSweave.R | 22 ++-
inst/doc/figs/fig-pgfSweave-hist.pgf | 255 ++++++++++++++++++++++++++++
inst/doc/figs/fig-pgfSweave-tikz-hist.tikz | 110 ++++++++++++
3 files changed, 381 insertions(+), 6 deletions(-)
commit 224c98c100ecaeb90085b30e5978e3736f97e6f1
Author: cameronbracken <[email protected]>
Date: Wed Mar 23 17:32:21 2011 -0600
Fix bug where code was chached when cache=F and explicitly turn off
externalizaton when external is not TRUE so that custom commands (such
as xelatex) can be used.
R/pgfSweaveDriver.R | 14 +++++++++++++-
inst/tests/tidy.Rnw | 2 +-
2 files changed, 14 insertions(+), 2 deletions(-)
commit 52c8ea46d491ce1917c57c979ab8860f0b9c85a8
Author: cameronbracken <[email protected]>
Date: Wed Mar 23 16:25:58 2011 -0600
Re-add vignette files
inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 0 -> 16274 bytes
inst/doc/pgfSweave.pdf | Bin 0 -> 281287 bytes
2 files changed, 0 insertions(+), 0 deletions(-)
commit 027c008b4685f03fdd3076f3d0cdd233d2eecc37
Author: cameronbracken <[email protected]>
Date: Wed Mar 23 16:23:40 2011 -0600
Rebuild vignette
inst/doc/pgfSweave_hans.pdf | Bin 236197 -> 236197 bytes
1 files changed, 0 insertions(+), 0 deletions(-)
commit 40afcea9f28aaee1e02d43ba10efae7381a05cd1
Author: cameronbracken <[email protected]>
Date: Wed Mar 16 15:56:15 2011 -0600
Update documentation and improve command line script
ChangeLog | 14 ++
DESCRIPTION | 2 +-
NEWS | 3 +
R/pgfSweave.R | 9 +-
exec/pgfsweave-script.R | 136 +++++++------------
inst/doc/figs/fig-normalSweave.pdf | Bin 3083 -> 2960 bytes
inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28559 -> 28559 bytes
inst/doc/pgfSweave-example.pdf | Bin 78117 -> 78061 bytes
inst/doc/pgfSweave.Rnw | 80 +++++++-----
inst/doc/pgfSweave_hans.pdf | Bin 236093 -> 236197 bytes
.../vignette-src/pgfSweave-vignette-source.Rnw | 80 +++++++-----
man/pgfSweave.Rd | 12 +-
12 files changed, 179 insertions(+), 157 deletions(-)
commit 881f0fae6aff0dbe021007f6166401df6f030777
Author: cameronbracken <[email protected]>
Date: Tue Feb 22 13:36:26 2011 -0700
Actually build both vignettes correctly
ChangeLog | 19 +++++++++++++++++++
inst/doc/figs/fig-normalSweave.pdf | Bin 2965 -> 3083 bytes
inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28550 -> 28559 bytes
inst/doc/pgfSweave-example.pdf | Bin 78117 -> 78117 bytes
inst/doc/pgfSweave_hans.pdf | Bin 236093 -> 236093 bytes
inst/misc/vignette-src/Makefile | 4 ++--
6 files changed, 21 insertions(+), 2 deletions(-)
commit e61e2260041fa50209ff553e70a44d3733d99b8f
Author: cameronbracken <[email protected]>
Date: Tue Feb 22 13:31:47 2011 -0700
Fix automatic building of Hans' vignette
ChangeLog | 68 +++++++++++++++++++++++++++++
R/pgfSweaveDriver.R | 2 +-
inst/doc/figs/fig-normalSweave.pdf | Bin 3056 -> 2965 bytes
inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 28512 -> 28550 bytes
inst/doc/pgfSweave-example.pdf | Bin 78117 -> 78117 bytes
inst/doc/pgfSweave.Rnw | 4 +-
inst/doc/pgfSweave.pdf | Bin 288991 -> 0 bytes
inst/doc/pgfSweave_hans.Rnw | 2 +-
inst/doc/pgfSweave_hans.pdf | Bin 0 -> 236093 bytes
inst/example/caching.Rnw | 2 +-
inst/misc/vignette-src/Makefile | 12 ++++-
11 files changed, 82 insertions(+), 8 deletions(-)
commit d7c4386fbd6101d874ca024ab8a27650ba6e9dfe
Author: cameronbracken <[email protected]>
Date: Tue Feb 22 13:13:32 2011 -0700
Fix options call
R/pgfSweaveDriver.R | 2 +-
inst/doc/pgfSweave.pdf | Bin 288991 -> 288991 bytes
2 files changed, 1 insertions(+), 1 deletions(-)
commit d38f61ceb6549a73e070ee20befeafb3027902ae
Author: cameronbracken <[email protected]>
Date: Tue Feb 22 12:11:52 2011 -0700
Update PGF version check to 2.10
R/zzz.R | 12 ++++++------
1 files changed, 6 insertions(+), 6 deletions(-)
commit 0bad74ef4c42e0a33e6dd2e94510c4722524bff9
Author: cameronbracken <[email protected]>
Date: Tue Feb 22 11:59:02 2011 -0700
Use the correct options function in the driver
R/pgfSweaveDriver.R | 2 +-
1 files changed, 1 insertions(+), 1 deletions(-)
commit 2ec6cea4fa2c3e1d7531238f27566c0ac24ef78d
Author: cameronbracken <[email protected]>
Date: Mon Feb 21 17:13:58 2011 -0700
Remove everything from the tex.driver option
R/pgfSweaveDriver.R | 47 +-------------------
.../vignette-src/pgfSweave-vignette-source.Rnw | 2 +-
man/pgfSweaveDriver.Rd | 6 +--
3 files changed, 3 insertions(+), 52 deletions(-)
commit 844d9a9d6c95b966a1bdaf3f2e732ad99058d9b2
Author: cameronbracken <[email protected]>
Date: Mon Feb 21 17:09:21 2011 -0700
Update to the documentation and vignette with recent changes, new
example of using tikz externalization library to generate eps graphics
ChangeLog | 106 +++++++++++++++
DESCRIPTION | 10 +-
NEWS | 26 ++++-
README.md | 4 +-
inst/doc/figs/fig-normalSweave.pdf | Bin 2965 -> 3056 bytes
inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16286 -> 0 bytes
inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 26912 -> 28512 bytes
inst/doc/pgfSweave-example-Rnw.in | 8 +-
inst/doc/pgfSweave-example-tex.in | 32 +++--
inst/doc/pgfSweave-example.pdf | Bin 78139 -> 78117 bytes
inst/doc/pgfSweave.Rnw | 135 +++++++++++++++-----
inst/doc/pgfSweave.pdf | Bin 278812 -> 288991 bytes
inst/doc/pgfSweave_hans.pdf | Bin 236105 -> 0 bytes
inst/example/Makefile | 10 +-
inst/example/pgfSweave-example.Rnw | 2 +
inst/example/pgfSweave-latex-example.Rnw | 50 +++++++
inst/misc/vignette-src/Makefile | 11 +-
.../vignette-src/pgfSweave-vignette-source.Rnw | 89 +++++++++++---
inst/tests/Makefile | 2 +-
man/pgfSweave.Rd | 29 +++--
20 files changed, 424 insertions(+), 90 deletions(-)
commit 4d07efb597e262913c5112aa712686da9278f043
Author: cameronbracken <[email protected]>
Date: Tue Feb 8 14:07:39 2011 -0700
Redefine Houtput environment to use \raggedright to avoid the extra space added by flushleft
R/pgfSweaveDriver.R | 2 +-
1 files changed, 1 insertions(+), 1 deletions(-)
commit b83eeceb5b7db4c388ddb92140cb5a0c07895a86
Author: cameronbracken <[email protected]>
Date: Fri Jan 21 10:27:33 2011 -0700
Greatly reduce package load time (from 5 to 1 second) by using import
instead of depends
DESCRIPTION | 6 +++---
NAMESPACE | 3 +++
R/pgfSweaveDriver.R | 18 +++++++++++-------
exec/pgfsweave-script.R | 4 ----
4 files changed, 17 insertions(+), 14 deletions(-)
commit 916336bf42692191836e42a2f4e8b378854121d5
Author: cameronbracken <[email protected]>
Date: Tue Jan 18 17:33:58 2011 -0700
First cut using the tikz external library, also generate highlighted
output in a special environment. See full commit message for details
- Use the tikz external library with the `list and make` option. This
option allows for externalized graphic dependency checking and
parallel compilation of external graphics
- The tikz external library with this option uses a slightly
different workflow, namely:
1. Run (pdf)latex once to generate a makefile with graphic
dependencies
2. Run make to externalize graphics
3. Run (pdf)latex again
- pgfSweave() and pgfSweave-script.R have been updated accordingly
and now have a new option to specify the number of processors
- All the old externalization command stuff has been removed, so no
more .sh file!
- Instead of the \pgfrealjobname command added, the \tikzexternalize
command is added automatically in addition to the
- Also use the \tikzexternalfiledependsonfile feature to add
dependency on the .tikz file
- Externalized graphics now have another layer of crude caching on their
own, this was attempted before but now works correctly. A digest of
the entire chunk is computed and stored in a stashR database for the
chunk (if cache is already TRUE, then the existing db is used). If
anything changes in the code chunk at all, including white space, the
graphic is updated, otherwise the figure is not regenerated. This
also helps a bit for plain pdf and eps output.
- Highlighted output is now output in a `Houtput` environment just like
the regular Sweave echo'd output. This environment is defined by
default to be a `flushleft` environment so that graphics can be
centered with \centering or something similar. This environment can also
be redefined by the user with \renewenvironment
- Move some functions around and add some more comments
R/cacheSweaveUnexportedFunctions.R | 73 +++++++++++++-
R/pgfSweave.R | 41 ++++----
R/pgfSweaveDriver.R | 194 +++++++++++++++-------------------
R/utilities.R | 205 ++++--------------------------------
exec/pgfsweave-script.R | 42 +++++---
inst/example/pgfSweave-example.Rnw | 6 +-
6 files changed, 227 insertions(+), 334 deletions(-)
commit 40a152d1531f4f62c101c92ef6afcd3630f148cd
Author: cameronbracken <[email protected]>
Date: Sun Jan 16 16:57:32 2011 -0700
Prep for next release
ChangeLog | 152 ++++++++++++++++++++
DESCRIPTION | 2 +-
NEWS | 1 +
inst/doc/figs/fig-normalSweave.pdf | Bin 2937 -> 2965 bytes
inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16299 -> 16286 bytes
inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 26907 -> 26912 bytes
inst/doc/pgfSweave-example-Rnw.in | 9 +-
inst/doc/pgfSweave-example-tex.in | 20 ++-
inst/doc/pgfSweave-example.pdf | Bin 76150 -> 78139 bytes
inst/doc/pgfSweave.Rnw | 87 ++++++------
inst/doc/pgfSweave.pdf | Bin 276681 -> 278812 bytes
inst/doc/pgfSweave_hans.pdf | Bin 236103 -> 236105 bytes
inst/misc/vignette-src/Makefile | 13 +-
.../vignette-src/pgfSweave-vignette-source.Rnw | 73 +++++-----
inst/tests/Makefile | 2 +-
15 files changed, 260 insertions(+), 99 deletions(-)
commit fcad9715f3ed976c77c7ac99fa4099123d6e976e
Author: cameronbracken <[email protected]>
Date: Sun Jan 16 16:56:13 2011 -0700
Improve automatic insertion of \pgfrealjobname
R/pgfSweaveDriver.R | 66 +++++++++++++++++++++++++++++---------------------
1 files changed, 38 insertions(+), 28 deletions(-)
commit 199bb28ffa62532c8df42500519ef4516c04e5fc
Author: cameronbracken <[email protected]>
Date: Sun Jan 16 14:58:51 2011 -0700
Update links to tidy.source in docs
man/pgfSweaveDriver.Rd | 4 ++--
1 files changed, 2 insertions(+), 2 deletions(-)
commit 12ecc4ea27bd259885ab9fc647bd34d2bc7df0eb
Author: cameronbracken <[email protected]>
Date: Sun Jan 16 14:40:42 2011 -0700
Minor cleanup and tweak to example
R/pgfSweaveDriver.R | 4 ++--
inst/example/pgfSweave-example.Rnw | 8 ++++----
2 files changed, 6 insertions(+), 6 deletions(-)
commit 8e42d428bc76b86a49685f2c3f631bb37e743c2e
Author: cameronbracken <[email protected]>
Date: Tue Jan 11 15:50:11 2011 -0700
Copy cacheSweave functions and use cacheSweaveEvalWithOpt since the old changes to that function are no longer in use.
R/pgfSweaveDriver.R | 4 +-
R/utilities.R | 178 ++++++++++++++++++++++++++++++++++++++++---------
inst/example/Makefile | 2 +-
3 files changed, 150 insertions(+), 34 deletions(-)
commit d241291787a386c78b3c6554204065e171aa1472
Author: cameronbracken <[email protected]>
Date: Mon Jan 10 15:47:25 2011 -0700
Cleaning up some more code
R/pgfSweaveDriver.R | 2 +-
R/zzz.R | 86 ++++++++++++++++++------------------
inst/example/pgfSweave-example.Rnw | 1 +
inst/tests/tidy2.Rnw | 4 +-
4 files changed, 47 insertions(+), 46 deletions(-)
commit 8c4283c98516de16df5883f59ba055291645245e
Author: cameronbracken <[email protected]>
Date: Mon Jan 10 00:33:31 2011 -0700
Add repo info to README.md
README.md | 2 ++
1 files changed, 2 insertions(+), 0 deletions(-)
commit 7465ff4f212ac021778dbca77ba7babbfa80668a
Author: cameronbracken <[email protected]>
Date: Mon Jan 10 00:30:25 2011 -0700
Remove duplicate entry in NEWS
NEWS | 1 -
1 files changed, 0 insertions(+), 1 deletions(-)
commit 2368a38952e52fae58ca2fef1ab19631c9d0aafa
Author: cameronbracken <[email protected]>
Date: Mon Jan 10 00:28:39 2011 -0700
Remove dead code, comment and format some of driver code
R/pgfSweaveDriver.R | 81 +++++++++++++++++++++++++--------------------------
R/utilities.R | 8 ++---
2 files changed, 43 insertions(+), 46 deletions(-)
commit 172dcba3146c14f1ce27ffd94dbd17e167a1d343
Author: cameronbracken <[email protected]>
Date: Mon Jan 10 00:28:29 2011 -0700
Update NEWS
NEWS | 19 ++++++++++---------
1 files changed, 10 insertions(+), 9 deletions(-)
commit d5ccf25b0712a3776d94d6c5891b696c87a1c0ff
Author: cameronbracken <[email protected]>
Date: Mon Jan 10 00:27:18 2011 -0700
Move all new features to github issue tracker, old items to OREADME.md
OREADME.md | 52 ++++++++++++++++++++++++++++++++++
README.md | 90 ++---------------------------------------------------------
2 files changed, 56 insertions(+), 86 deletions(-)
commit 2bc528c6a21a6e19bd68ff9de70fdbdf004c0d44
Author: cameronbracken <[email protected]>
Date: Sun Jan 9 17:42:43 2011 -0700
Fix CRLF (just in case)
inst/tests/tidy.Rnw | 7 ++++---
1 files changed, 4 insertions(+), 3 deletions(-)
commit 06ee9f05dfc68fe5ded9703c2d163b029c1c7351
Author: Yihui Xie <[email protected]>
Date: Sun Jan 9 16:59:00 2011 -0600
use 0.75 is OK now; deparse.tidy() can deal with the case in which inline comments are pushed to the next line
R/pgfSweaveDriver.R | 2 +-
1 files changed, 1 insertions(+), 1 deletions(-)
commit 4a4652bf4fd978c6c80af42abfaf88e7f714e6b7
Author: Yihui Xie <[email protected]>
Date: Sun Jan 9 16:57:24 2011 -0600
parse.tidy and deparse.tidy are in formatR now
R/utilities.R | 40 ----------------------------------------
1 files changed, 0 insertions(+), 40 deletions(-)
commit 2760c5a76dddeaf97cb2f415e2524e942734ff82
Author: Yihui Xie <[email protected]>
Date: Sun Jan 9 16:55:43 2011 -0600
trim white spaces, as my first step to touch other people's code
R/pgfSweaveDriver.R | 230 +++++++++++++++++++++++++-------------------------
R/utilities.R | 56 ++++++------
2 files changed, 143 insertions(+), 143 deletions(-)
commit 98db46a6e251fdc1c01b9546a79bd19f4352dc5d
Author: cameronbracken <[email protected]>
Date: Sun Jan 9 05:45:01 2011 -0700
Incorporate new features from formatR 0.1-7, saves alot of grief, but still a small bug in printing long lines with inline comments.
Rebuild Vignette
ChangeLog | 211 ++++++++++++++++++++
DESCRIPTION | 2 +-
NEWS | 3 +-
R/pgfSweaveDriver.R | 55 +++---
R/utilities.R | 31 ++-
inst/doc/figs/fig-normalSweave.pdf | Bin 3139 -> 2937 bytes
inst/doc/figs/fig-pgfSweave-hist.pdf | Bin 16297 -> 16299 bytes
inst/doc/figs/fig-pgfSweave-tikz-hist.pdf | Bin 26936 -> 26907 bytes
inst/doc/pgfSweave-example-Rnw.in | 7 +-
inst/doc/pgfSweave-example-tex.in | 8 +-
inst/doc/pgfSweave-example.pdf | Bin 27626 -> 76150 bytes
inst/doc/pgfSweave.Rnw | 106 +++++++----
inst/doc/pgfSweave.pdf | Bin 258657 -> 276681 bytes
inst/misc/vignette-src/Makefile | 4 +-
.../vignette-src/pgfSweave-vignette-source.Rnw | 14 +-
inst/tests/tidy2.Rnw | 14 +-
16 files changed, 359 insertions(+), 96 deletions(-)
commit 05087396230a7436dbb38354324592be9e23031b
Author: cameronbracken <[email protected]>
Date: Fri Jan 7 13:39:40 2011 -0700
Remove debugging code
R/pgfSweaveDriver.R | 3 ---
inst/example/pgfSweave-example.Rnw | 1 +
2 files changed, 1 insertions(+), 3 deletions(-)
commit c542d07aa53eea2e50c9eb6acf42993cfeaabb0c
Author: cameronbracken <[email protected]>
Date: Fri Jan 7 13:32:35 2011 -0700
New example from Yihui Xie, updated existing example
inst/example/Makefile | 3 +
inst/example/caching.Rnw | 148 ++++++++++++++++++++++++++++++++++++
inst/example/pgfSweave-example.Rnw | 4 +-
3 files changed, 153 insertions(+), 2 deletions(-)
commit 9c507a65e552cba1d9ae593e25fd8031c615a166
Author: cameronbracken <[email protected]>
Date: Fri Jan 7 13:31:57 2011 -0700
Inline comments actually work now with tidy=T
R/pgfSweaveDriver.R | 141 ++++++++++++++++++++++++++------------------------
1 files changed, 73 insertions(+), 68 deletions(-)
commit 94dc4f68ac69ebdf18d5eadb4e848f72a0cf6b4d
Author: cameronbracken <[email protected]>
Date: Fri Jan 7 12:18:24 2011 -0700
Inline comments actually working now
R/pgfSweaveDriver.R | 24 ++++++------------------
R/utilities.R | 11 +++++++++++
2 files changed, 17 insertions(+), 18 deletions(-)