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Vina runtime error: The ligand is outside the grid box #309

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srilekha1993 opened this issue May 3, 2024 · 1 comment
Open

Vina runtime error: The ligand is outside the grid box #309

srilekha1993 opened this issue May 3, 2024 · 1 comment

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@srilekha1993
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I have tried with 5 lignads(such as 5wl0,1jla,1aet,5tim,4fev) for Vina GPU with the center values and box volume(x,y,x) which worked fine while in Autodock Vina CPU(for 1.2.5) with corrosponding value of center and box volume showing ligand outside the grid box error while for Autodock Vina CPU(1.2.2) version it works fine. May i know the reason behind this?

@rwxayheee
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Hi @srilekha1993
It might be due to commit 706479e which happened after v1.2.2 to address #31. Also, the checking only occurs when doing --score_only (for single-point evaluation) or --local_only (for local search), but not in regular docking (global search) when without these options.

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