Add approved assays to accepted assay list

[jahilton]

A number of assays were approved for submission and now have EFO terms, so they can be included in census_accepted_assays & the data can be included in Census

term_id	label
EFO:0022600	Parse Evercode Whole Transcriptome v1
EFO:0022601	Parse Evercode Whole Transcriptome v2
EFO:0022602	Parse Evercode Whole Transcriptome v3
EFO:0022839	STORM-seq
EFO:0022606	10x gene expression flex
EFO:0022845	modified STRT-seq
EFO:0022846	5' STRT-seq

[ivirshup]

@jahilton, is STORM seq the only full-length assay here?

[jahilton]

Yes
Also of note, 10x flex is probe-based

[ivirshup]

Have we had any other platforms that are probe based in census?

[ivirshup]

Also, do you have any counts on how many cells we have with those technologies? I did a build on my PR, and want some numbers I can compare in spot checks to make sure everything is working as expected.

[ivirshup]

The only difference I am immediately seeing is that all the sci-RNA-seq data now seems to be labelled sci-RNA-seq3. I am also not seeing any datasets with these assay types in the dataset listing from the curation API.

[jahilton]

We have "BD Rhapsody Targeted mRNA" - I don't know offhand how that compares to 10x flex
I believe some Visium will be probe-based, but not the v1 that is currently accepted

The only assay in this ticket with data currently in CELLxGENE is "modified STRT-seq" in this Collection - assay update specified in the ontology bump issue
The rest were added as they pertain to in progress submissions

[ivirshup]

Ah, I didn't make the connection that this was part of the 5.3 update. That explains why I'm not seeing that assay in the curation API or census.