diff --git a/.github/workflows/compatibility_tests.yml b/.github/workflows/compatibility_tests.yml
index 0f3885958..4d2691418 100644
--- a/.github/workflows/compatibility_tests.yml
+++ b/.github/workflows/compatibility_tests.yml
@@ -7,6 +7,10 @@ on:
branches:
- main
+ # For debug - uncomment below to run on all PRs
+ pull_request:
+ branches: "*"
+
env:
JEST_ENV: prod
@@ -28,13 +32,14 @@ jobs:
strategy:
fail-fast: false
matrix:
+ # note: The `macos-latest` is latest Catalina version, and not Big Sur. So we explicitly ask for Big Sur (`macos-11`)
os: [ubuntu-latest, macos-latest, macos-13]
- python-version: ["3.10", "3.11", "3.12"]
+ python-version: ["3.10", "3.11"]
cellxgene_build: [main, latest]
# add anndata pinned version test for subset of matrix configurations,
# in order to reduce matrix cross-product explosion
include:
- - python-version: 3.12
+ - python-version: 3.11
cellxgene_build: latest
# TODO: dynamically use the literal version in requirements.txt,
# to avoid having to update this in manually in the future
@@ -95,7 +100,7 @@ jobs:
# keep same pip pkg versions as in the cxg release
sed -i'' -e 's/-r requirements.txt//' server/requirements-dev.txt
pip install -r server/requirements-dev.txt
- pip install --force-reinstall numpy==2.0.1 numba>=0.60.0 pandas flatbuffers==2.0.7
+ pip install --force-reinstall numpy==2.0.1 numba>=0.60.0 pandas
- name: Install anndata version per matrix variable
run: pip install anndata${{ matrix.anndata_version }}
- name: Install node
diff --git a/README.md b/README.md
index 3686a0d61..f8c437184 100644
--- a/README.md
+++ b/README.md
@@ -1,4 +1,4 @@
-
+![](https://github.com/chanzuckerberg/cellxgene/raw/main/docs/cellxgene-logo.png)
_an interactive explorer for single-cell transcriptomics data_
@@ -11,7 +11,8 @@ CZ CELLxGENE Annotate (pronounced "cell-by-gene") is an interactive data explore
Whether you need to visualize one thousand cells or one million, CELLxGENE Annotate helps you gain insight into your single-cell data.
-
+![](https://github.com/chanzuckerberg/cellxgene/raw/main/docs/images/crossfilter.gif)
+![](https://github.com/chanzuckerberg/cellxgene/raw/main/docs/images/category-breakdown.gif)
# Getting started
diff --git a/client/__tests__/util/promiseLimit.test.js b/client/__tests__/util/promiseLimit.test.js
index b22ff5b17..fcdcbc45b 100644
--- a/client/__tests__/util/promiseLimit.test.js
+++ b/client/__tests__/util/promiseLimit.test.js
@@ -76,7 +76,7 @@ describe("PromiseLimit", () => {
const plimit = new PromiseLimit(1);
let finishOrder = 0;
- const callback = () => async () => {
+ const callback = async () => {
await delay(100);
const result = finishOrder;
finishOrder += 1;
@@ -84,11 +84,11 @@ describe("PromiseLimit", () => {
};
const result = await Promise.all([
- plimit.add(callback()),
- plimit.priorityAdd(4, callback()),
- plimit.priorityAdd(0, callback()),
- plimit.priorityAdd(1, callback()),
- plimit.priorityAdd(-1, callback()),
+ plimit.add(callback),
+ plimit.priorityAdd(4, callback),
+ plimit.priorityAdd(0, callback),
+ plimit.priorityAdd(1, callback),
+ plimit.priorityAdd(-1, callback),
]);
expect(result).toEqual([0, 4, 2, 3, 1]);
diff --git a/client/package.json b/client/package.json
index b20cd41d6..8fb995a91 100644
--- a/client/package.json
+++ b/client/package.json
@@ -10,8 +10,8 @@
"dev": "npm run build -- configuration/webpack/webpack.config.dev.js",
"e2e": "jest --config __tests__/e2e/e2eJestConfig.json e2e/e2e.test.js",
"e2e-annotations": "jest --config __tests__/e2e/e2eJestConfig.json e2e/e2eAnnotations.test.js",
- "fmt": "eslint --fix src __tests__",
- "lint": "eslint --fix src __tests__",
+ "fmt": "eslint --fix __tests__",
+ "lint": "eslint --fix __tests__",
"prod": "npm run build -- configuration/webpack/webpack.config.prod.js",
"test": "jest --testPathIgnorePatterns e2e",
"prepare": "cd .. && husky install client/.husky"