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"2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "8f2ddddd-c7f0-4f67-8049-dc6b66b78e18", "type": "REQUEST", "details": {"url": "/curation/v1/collections/2582e857-eb9f-4b46-a6af-109405108ef0", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "8f2ddddd-c7f0-4f67-8049-dc6b66b78e18", "type": "RESPONSE", "details": {"status_code": 403, "content_length": 132, "response_time": 0.0017957687377929688}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "731e2335-2833-41ea-b519-1c956a857cdb", "type": "REQUEST", "details": {"url": "/curation/v1/collections/9c609990-e9f9-462d-8ce0-27a3471fcf97", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "731e2335-2833-41ea-b519-1c956a857cdb", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 3578, "response_time": 0.00480961799621582}} diff --git a/22178/data/attachments/2262c65a9c86482e.txt b/22178/data/attachments/2262c65a9c86482e.txt deleted file mode 100644 index 8725b9d94234..000000000000 --- a/22178/data/attachments/2262c65a9c86482e.txt +++ /dev/null @@ -1,2 +0,0 @@ -INFO backend.layers.business.business:business.py:1329 {'message': 'Restoring previous dataset version', 'dataset_id': '920a712b-5aa9-4420-9a00-03145437eb6e', 'replace_version_id': '034f4434-edb2-4da1-95fe-6d1fe2496b2f', 'restored_version_id': '347870b3-5bb1-4010-b1ce-a5053992c9b0'} -INFO backend.layers.business.business:business.py:1329 {'message': 'Restoring previous dataset version', 'dataset_id': 'afbfed30-b7e9-4c02-abdf-fccd38e6633b', 'replace_version_id': '84889ad1-ab93-4b97-aa3f-455e9496b6c8', 'restored_version_id': 'c4a9c4f4-fd64-4b64-9aef-4c7c0755d813'} \ No newline at end of file diff --git a/22178/data/attachments/22907fdcfd695a09.txt b/22178/data/attachments/22907fdcfd695a09.txt deleted file mode 100644 index 0a2469616f8c..000000000000 --- a/22178/data/attachments/22907fdcfd695a09.txt +++ /dev/null @@ -1,3 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "10422bfe-b002-4705-b37d-6d019a4da9c6", "type": "REQUEST", "details": {"url": "/curation/v1/collections", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "root", "message": "", "lineno": 42, "pathname": "/single-cell-data-portal/backend/curation/api/v1/curation/collections/actions.py", "request_id": "10422bfe-b002-4705-b37d-6d019a4da9c6", "is_published": true} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "10422bfe-b002-4705-b37d-6d019a4da9c6", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 1782, "response_time": 0.0025146007537841797}} diff --git a/22178/data/attachments/22af05d2544e60e3.txt b/22178/data/attachments/22af05d2544e60e3.txt deleted file mode 100644 index a997b849c61e..000000000000 --- a/22178/data/attachments/22af05d2544e60e3.txt +++ /dev/null @@ -1,4 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "f5fdd3c8-6b0b-46ef-a108-5832d04a3c44", "type": "REQUEST", "details": {"url": "/curation/v1/dataset_versions/00317d49-0bf1-4ce6-b49a-e3a9467165fc", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "f5fdd3c8-6b0b-46ef-a108-5832d04a3c44", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 2510, "response_time": 0.0048787593841552734}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "9dc0f253-803e-42ec-b08d-3e1529669afd", "type": "REQUEST", "details": {"url": "/curation/v1/dataset_versions/c24c1c0a-95b5-4169-9391-531bdfb1fc28", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "9dc0f253-803e-42ec-b08d-3e1529669afd", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 2510, "response_time": 0.004654407501220703}} diff --git a/22178/data/attachments/22afa59b18357813.txt b/22178/data/attachments/22afa59b18357813.txt deleted file mode 100644 index 6f6d5cd635cd..000000000000 --- a/22178/data/attachments/22afa59b18357813.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "c99bf188-10fc-4edc-a8ef-fec29c1f1df1", "type": "REQUEST", "details": {"url": "/dp/v1/collections/19a742d0-c2c1-48bf-89b6-869cc4881abe/datasets/916136bc-cd75-4469-9f1e-8f7c56a97623", "method": "PATCH", "content_length": 22}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "c99bf188-10fc-4edc-a8ef-fec29c1f1df1", "type": "RESPONSE", "details": {"status_code": 202, "content_length": null, "response_time": 0.0069427490234375}} diff --git a/22178/data/attachments/22eee273a8b8deb.txt b/22178/data/attachments/22eee273a8b8deb.txt deleted file mode 100644 index 7e530e37c8a9..000000000000 --- a/22178/data/attachments/22eee273a8b8deb.txt +++ /dev/null @@ -1,50 +0,0 @@ -INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': cf28c775-ed25-408b-966e-742dbb9d24f8, 'url': 'https://www.dropbox.com/s/ow84zm4h0wkl409/test.h5ad?dl=0', 'current_dataset_version_id': None} -INFO processing:process.py:104 Processing dataset version 345a0e1d-7ca8-4412-8e41-c48b215feb78 -INFO processing:process_logic.py:45 Updating processing status -INFO processing:logger.py:26 Start download_from_source_uri -INFO processing:logger.py:28 Complete download_from_source_uri -INFO processing:process_logic.py:45 Updating processing status -INFO processing:logger.py:26 Start create_artifact -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:91 Uploaded [345a0e1d-7ca8-4412-8e41-c48b215feb78/raw.h5ad] to s3://fake_bucket_name/345a0e1d-7ca8-4412-8e41-c48b215feb78/raw.h5ad -INFO processing:process_logic.py:93 Updated database with raw_h5ad. -INFO processing:process_logic.py:45 Updating processing status -INFO processing:logger.py:28 Complete create_artifact -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_download.py:120 {'message': 'Estimated resource requirements', 'memory_modifier': 3, 'swap_modifier': 0, 'min_vcpu': 2, 'max_vcpu': 96, 'max_swap_memory_MB': 300000, 'memory_per_vcpu': 8000, 'uncompressed_size_MB': 0.95367431640625, 'max_swap': 0, 'memory': 16000, 'vcpus': 2} -INFO processing:process_download.py:200 {'JobDefinitionName': 'dp-test-ingest-process-345a0e1d-7ca8-4412-8e41-c48b215feb78', 'Vcpus': 2, 'Memory': 16000, 'LinuxParameters': {'Swappiness': 60, 'MaxSwap': 0}} -INFO processing:process.py:104 Processing dataset version 345a0e1d-7ca8-4412-8e41-c48b215feb78 -INFO processing:logger.py:26 Start validate_h5ad_file_and_add_labels -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:45 Updating processing status -INFO processing:logger.py:28 Complete validate_h5ad_file_and_add_labels -INFO processing:logger.py:26 Start create_artifact -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:91 Uploaded [345a0e1d-7ca8-4412-8e41-c48b215feb78/local.h5ad] to s3://fake_bucket_name/345a0e1d-7ca8-4412-8e41-c48b215feb78/local.h5ad -INFO processing:process_logic.py:93 Updated database with h5ad. -INFO processing:process_logic.py:100 Uploaded 345a0e1d-7ca8-4412-8e41-c48b215feb78.h5ad to s3://fake_datasets_bucket/345a0e1d-7ca8-4412-8e41-c48b215feb78/345a0e1d-7ca8-4412-8e41-c48b215feb78.h5ad -INFO processing:process_logic.py:45 Updating processing status -INFO processing:logger.py:28 Complete create_artifact -INFO processing:process.py:104 Processing dataset version 345a0e1d-7ca8-4412-8e41-c48b215feb78 -INFO processing:process_logic.py:113 Converting local.h5ad -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:119 Finished converting in 0:00:00.000515 -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_cxg.py:109 Updating database with cxg artifact for dataset 345a0e1d-7ca8-4412-8e41-c48b215feb78. s3_uri is s3://fake_cxg_bucket/345a0e1d-7ca8-4412-8e41-c48b215feb78.cxg/ -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process.py:104 Processing dataset version 345a0e1d-7ca8-4412-8e41-c48b215feb78 -INFO processing:process_seurat.py:80 enforce canonical format in X -INFO processing:process_seurat.py:83 enforce canonical format in raw.X -INFO processing:process_logic.py:113 Converting local.h5ad -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:119 Finished converting in 0:00:00.000524 -INFO processing:logger.py:26 Start create_artifact -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:91 Uploaded [345a0e1d-7ca8-4412-8e41-c48b215feb78/local.rds] to s3://fake_bucket_name/345a0e1d-7ca8-4412-8e41-c48b215feb78/local.rds -INFO processing:process_logic.py:93 Updated database with rds. -INFO processing:process_logic.py:100 Uploaded 345a0e1d-7ca8-4412-8e41-c48b215feb78.rds to s3://fake_datasets_bucket/345a0e1d-7ca8-4412-8e41-c48b215feb78/345a0e1d-7ca8-4412-8e41-c48b215feb78.rds -INFO processing:process_logic.py:45 Updating processing status -INFO processing:logger.py:28 Complete create_artifact \ No newline at end of file diff --git a/22178/data/attachments/2330efc0fcb29d19.txt b/22178/data/attachments/2330efc0fcb29d19.txt deleted file mode 100644 index f5d266e509db..000000000000 --- a/22178/data/attachments/2330efc0fcb29d19.txt +++ /dev/null @@ -1,5 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:33:45.003Z", "name": "root", "message": "", "lineno": 22, "pathname": "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", "dataset_version_id": "123", "collection_version_id": "456", "error": {}, "execution_id": "arn:aws:states:us-west-2:123456789012:execution:MyStateMachine"} -{"levelname": "ERROR", "asctime": "2024-10-03T15:33:54.003Z", "name": "processing", "message": "Failed to update dataset processing status", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 199, in _new_conn\n sock = connection.create_connection(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py\", line 60, in create_connection\n for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):\n File \"/usr/lib/python3.10/socket.py\", line 967, in getaddrinfo\n for res in _socket.getaddrinfo(host, port, family, type, proto, flags):\nsocket.gaierror: [Errno -3] Temporary failure in name resolution\n\nThe above exception was the direct cause of the following exception:\n\nTraceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 464, in send\n urllib_response = conn.urlopen(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 843, in urlopen\n retries = retries.increment(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py\", line 449, in increment\n raise reraise(type(error), error, _stacktrace)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py\", line 39, in reraise\n raise value\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 789, in urlopen\n response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 495, in _make_request\n conn.request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 96, in request\n rval = super().request(method, url, body, headers, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 441, in request\n self.endheaders()\n File \"/usr/lib/python3.10/http/client.py\", line 1278, in endheaders\n self._send_output(message_body, encode_chunked=encode_chunked)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 123, in _send_output\n self.send(msg)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 223, in send\n return super().send(str)\n File \"/usr/lib/python3.10/http/client.py\", line 976, in send\n self.connect()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 279, in connect\n self.sock = self._new_conn()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 206, in _new_conn\n raise NameResolutionError(self.host, self, e) from e\nurllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution)\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 87, in update_dataset_processing_status_to_failed\n get_business_logic().update_dataset_version_status(\n File \"/single-cell-data-portal/backend/portal/api/providers.py\", line 18, in get_business_logic\n DatabaseProvider(),\n File \"/single-cell-data-portal/backend/layers/persistence/persistence.py\", line 57, in __init__\n database_uri = CorporaDbConfig().database_uri\n File \"/single-cell-data-portal/backend/common/utils/secret_config.py\", line 54, in __getattr__\n self.load()\n File \"/single-cell-data-portal/backend/common/utils/secret_config.py\", line 88, in load\n self.load_from_aws()\n File \"/single-cell-data-portal/backend/common/utils/secret_config.py\", line 99, in load_from_aws\n secret = AwsSecret(secret_path)\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 31, in __init__\n self._load()\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 76, in _load\n response = self.secrets_mgr.describe_secret(SecretId=self.name)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 569, in _api_call\n return self._make_api_call(operation_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1005, in _make_api_call\n http, parsed_response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1029, in _make_request\n return self._endpoint.make_request(operation_model, request_dict)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 119, in make_request\n return self._send_request(request_dict, operation_model)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 200, in _send_request\n while self._needs_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 360, in _needs_retry\n responses = self._event_emitter.emit(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 412, in emit\n return self._emitter.emit(aliased_event_name, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 256, in emit\n return self._emit(event_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 239, in _emit\n response = handler(**kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 207, in __call__\n if self._checker(**checker_kwargs):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 284, in __call__\n should_retry = self._should_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 320, in _should_retry\n return self._checker(attempt_number, response, caught_exception)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 363, in __call__\n checker_response = checker(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 247, in __call__\n return self._check_caught_exception(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 416, in _check_caught_exception\n raise caught_exception\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 279, in _do_get_response\n http_response = self._send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 383, in _send\n return self.http_session.send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 493, in send\n raise EndpointConnectionError(endpoint_url=request.url, error=e)\nbotocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: \"http://localstack:4566/\""} -{"levelname": "ERROR", "asctime": "2024-10-03T15:33:58.003Z", "name": "processing", "message": "Failed to clean up artifacts.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 199, in _new_conn\n sock = connection.create_connection(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py\", line 60, in create_connection\n for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):\n File \"/usr/lib/python3.10/socket.py\", line 967, in getaddrinfo\n for res in _socket.getaddrinfo(host, port, family, type, proto, flags):\nsocket.gaierror: [Errno -3] Temporary failure in name resolution\n\nThe above exception was the direct cause of the following exception:\n\nTraceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 464, in send\n urllib_response = conn.urlopen(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 843, in urlopen\n retries = retries.increment(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py\", line 449, in increment\n raise reraise(type(error), error, _stacktrace)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py\", line 39, in reraise\n raise value\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 789, in urlopen\n response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 495, in _make_request\n conn.request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 96, in request\n rval = super().request(method, url, body, headers, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 441, in request\n self.endheaders()\n File \"/usr/lib/python3.10/http/client.py\", line 1278, in endheaders\n self._send_output(message_body, encode_chunked=encode_chunked)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 123, in _send_output\n self.send(msg)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 223, in send\n return super().send(str)\n File \"/usr/lib/python3.10/http/client.py\", line 976, in send\n self.connect()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 279, in connect\n self.sock = self._new_conn()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 206, in _new_conn\n raise NameResolutionError(self.host, self, e) from e\nurllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution)\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 192, in cleanup_artifacts\n delete_many_from_s3(artifact_bucket, object_key + \"/\")\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 107, in delete_many_from_s3\n bucket.objects.filter(Prefix=f\"{prefix}\").delete()\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 555, in batch_action\n return action(self, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py\", line 134, in __call__\n for page in parent.pages():\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 169, in pages\n for page in pages:\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 269, in __iter__\n response = self._make_request(current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 357, in _make_request\n return self._method(**current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 569, in _api_call\n return self._make_api_call(operation_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1005, in _make_api_call\n http, parsed_response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1029, in _make_request\n return self._endpoint.make_request(operation_model, request_dict)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 119, in make_request\n return self._send_request(request_dict, operation_model)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 200, in _send_request\n while self._needs_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 360, in _needs_retry\n responses = self._event_emitter.emit(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 412, in emit\n return self._emitter.emit(aliased_event_name, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 256, in emit\n return self._emit(event_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 239, in _emit\n response = handler(**kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 207, in __call__\n if self._checker(**checker_kwargs):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 284, in __call__\n should_retry = self._should_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 320, in _should_retry\n return self._checker(attempt_number, response, caught_exception)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 363, in __call__\n checker_response = checker(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 247, in __call__\n return self._check_caught_exception(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 416, in _check_caught_exception\n raise caught_exception\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 279, in _do_get_response\n http_response = self._send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 383, in _send\n return self.http_session.send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 493, in send\n raise EndpointConnectionError(endpoint_url=request.url, error=e)\nbotocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: \"http://localstack:4566/artifact-bucket?prefix=123%2F&encoding-type=url\""} -{"levelname": "ERROR", "asctime": "2024-10-03T15:33:58.003Z", "name": "processing", "message": "Failed to clean up datasets.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 194, in cleanup_artifacts\n datasets_bucket = os.environ[\"DATASETS_BUCKET\"]\n File \"/usr/lib/python3.10/os.py\", line 680, in __getitem__\n raise KeyError(key) from None\nKeyError: 'DATASETS_BUCKET'"} -{"levelname": "ERROR", "asctime": "2024-10-03T15:34:03.003Z", "name": "processing", "message": "Failed to clean up cxgs.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 199, in _new_conn\n sock = connection.create_connection(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py\", line 60, in create_connection\n for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):\n File \"/usr/lib/python3.10/socket.py\", line 967, in getaddrinfo\n for res in _socket.getaddrinfo(host, port, family, type, proto, flags):\nsocket.gaierror: [Errno -3] Temporary failure in name resolution\n\nThe above exception was the direct cause of the following exception:\n\nTraceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 464, in send\n urllib_response = conn.urlopen(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 843, in urlopen\n retries = retries.increment(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py\", line 449, in increment\n raise reraise(type(error), error, _stacktrace)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py\", line 39, in reraise\n raise value\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 789, in urlopen\n response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 495, in _make_request\n conn.request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 96, in request\n rval = super().request(method, url, body, headers, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 441, in request\n self.endheaders()\n File \"/usr/lib/python3.10/http/client.py\", line 1278, in endheaders\n self._send_output(message_body, encode_chunked=encode_chunked)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 123, in _send_output\n self.send(msg)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 223, in send\n return super().send(str)\n File \"/usr/lib/python3.10/http/client.py\", line 976, in send\n self.connect()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 279, in connect\n self.sock = self._new_conn()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 206, in _new_conn\n raise NameResolutionError(self.host, self, e) from e\nurllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution)\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 198, in cleanup_artifacts\n delete_many_from_s3(cellxgene_bucket, object_key + \".cxg/\")\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 107, in delete_many_from_s3\n bucket.objects.filter(Prefix=f\"{prefix}\").delete()\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 555, in batch_action\n return action(self, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py\", line 134, in __call__\n for page in parent.pages():\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 169, in pages\n for page in pages:\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 269, in __iter__\n response = self._make_request(current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 357, in _make_request\n return self._method(**current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 569, in _api_call\n return self._make_api_call(operation_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1005, in _make_api_call\n http, parsed_response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1029, in _make_request\n return self._endpoint.make_request(operation_model, request_dict)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 119, in make_request\n return self._send_request(request_dict, operation_model)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 200, in _send_request\n while self._needs_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 360, in _needs_retry\n responses = self._event_emitter.emit(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 412, in emit\n return self._emitter.emit(aliased_event_name, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 256, in emit\n return self._emit(event_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 239, in _emit\n response = handler(**kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 207, in __call__\n if self._checker(**checker_kwargs):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 284, in __call__\n should_retry = self._should_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 320, in _should_retry\n return self._checker(attempt_number, response, caught_exception)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 363, in __call__\n checker_response = checker(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 247, in __call__\n return self._check_caught_exception(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 416, in _check_caught_exception\n raise caught_exception\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 279, in _do_get_response\n http_response = self._send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 383, in _send\n return self.http_session.send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 493, in send\n raise EndpointConnectionError(endpoint_url=request.url, error=e)\nbotocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: \"http://localstack:4566/cellxgene-bucket?prefix=123.cxg%2F&encoding-type=url\""} diff --git a/22178/data/attachments/237aba9e6ac9bcbf.txt b/22178/data/attachments/237aba9e6ac9bcbf.txt deleted file mode 100644 index b48be671419c..000000000000 --- a/22178/data/attachments/237aba9e6ac9bcbf.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "b606afe1-e0a6-4414-8690-4006178c3b4c", "type": "REQUEST", "details": {"url": "/dp/v1/collections/8b484f8a-44bb-4509-afa4-8296aa71b4e5", "method": "PUT", "content_length": 13}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "b606afe1-e0a6-4414-8690-4006178c3b4c", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 427, "response_time": 0.001806497573852539}} diff --git a/22178/data/attachments/241659c2f7e10f01.txt b/22178/data/attachments/241659c2f7e10f01.txt deleted file mode 100644 index 3c2c4aec842a..000000000000 --- a/22178/data/attachments/241659c2f7e10f01.txt +++ /dev/null @@ -1,3 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "6ccbf515-9c6d-4241-9ced-0a60a397fbd6", "type": "REQUEST", "details": {"url": "/curation/v1/collections", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "root", "message": "", "lineno": 42, "pathname": "/single-cell-data-portal/backend/curation/api/v1/curation/collections/actions.py", "request_id": "6ccbf515-9c6d-4241-9ced-0a60a397fbd6", "is_published": false, "owner": "test_user_id"} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "6ccbf515-9c6d-4241-9ced-0a60a397fbd6", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 785, "response_time": 0.0016512870788574219}} diff --git a/22178/data/attachments/2438215afea60514.txt b/22178/data/attachments/2438215afea60514.txt deleted file mode 100644 index 241397c4ad45..000000000000 --- a/22178/data/attachments/2438215afea60514.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:31:10.003Z", "name": "corpora-api-wmg-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "9455feff-0953-4ca2-b1f4-3350df154759", "type": "REQUEST", "details": {"url": "/wmg/v2/query", "method": "POST", "content_length": 127}} -{"levelname": "INFO", "asctime": "2024-10-03T15:31:10.003Z", "name": "corpora-api-wmg-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "9455feff-0953-4ca2-b1f4-3350df154759", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 3064, "response_time": 0.04856228828430176}} diff --git a/22178/data/attachments/24cf26607bf5387f.txt b/22178/data/attachments/24cf26607bf5387f.txt deleted file mode 100644 index 8137de23cb44..000000000000 --- a/22178/data/attachments/24cf26607bf5387f.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "317fab15-15db-49f3-890b-7d34a1402460", "type": "REQUEST", "details": {"url": "/dp/v1/datasets/b0322be6-1a40-4ad4-aca7-b7e91674a046", "method": "DELETE", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "317fab15-15db-49f3-890b-7d34a1402460", "type": "RESPONSE", "details": {"status_code": 403, "content_length": 144, "response_time": 0.0008432865142822266}} diff --git a/22178/data/attachments/25b59697dabfb2bc.txt b/22178/data/attachments/25b59697dabfb2bc.txt deleted file mode 100644 index 8eb3edcf7a5a..000000000000 --- a/22178/data/attachments/25b59697dabfb2bc.txt +++ /dev/null @@ -1,4 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:41.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "1977945c-dbf0-4260-a526-6f799c6951f0", "type": "REQUEST", "details": {"url": "/dp/v1/collections/ba16c7f8-9106-46cd-a775-13cdc0fd7a40/publish", "method": "POST", "content_length": 41}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:41.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "1977945c-dbf0-4260-a526-6f799c6951f0", "type": "RESPONSE", "details": {"status_code": 202, "content_length": 88, "response_time": 0.003587484359741211}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:41.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "140cd988-ec12-4a25-ac45-9465350abde3", "type": "REQUEST", "details": {"url": "/dp/v1/collections/741717b6-b498-45e2-8209-61decb7fdbe3", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:41.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "140cd988-ec12-4a25-ac45-9465350abde3", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 4128, "response_time": 0.004691600799560547}} diff --git a/22178/data/attachments/25c283b55d0d7f3d.txt b/22178/data/attachments/25c283b55d0d7f3d.txt deleted file mode 100644 index d90b57d14bf8..000000000000 --- a/22178/data/attachments/25c283b55d0d7f3d.txt +++ /dev/null @@ -1,3 +0,0 @@ -{"levelname": "WARNING", "asctime": "2024-10-03T15:34:08.003Z", "name": "root", "message": "Type float64 will be converted to 32 bit float and may lose precision.", "lineno": 155, "pathname": "/single-cell-data-portal/backend/layers/processing/utils/type_conversion_utils.py"} -{"levelname": "WARNING", "asctime": "2024-10-03T15:34:08.003Z", "name": "root", "message": "Type float64 will be converted to 32 bit float and may lose precision.", "lineno": 155, "pathname": "/single-cell-data-portal/backend/layers/processing/utils/type_conversion_utils.py"} -{"levelname": "WARNING", "asctime": "2024-10-03T15:34:08.003Z", "name": "root", "message": "Type float64 will be converted to 32 bit float and may lose precision.", "lineno": 155, "pathname": "/single-cell-data-portal/backend/layers/processing/utils/type_conversion_utils.py"} diff --git a/22178/data/attachments/25dd1955a314f842.txt b/22178/data/attachments/25dd1955a314f842.txt deleted file mode 100644 index 02a5177eb61d..000000000000 --- 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-{"levelname": "INFO", "asctime": "2024-10-03T15:31:10.003Z", "name": "corpora-api-wmg-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "a48ad038-7898-402c-b252-66ff0a17a9d3", "type": "RESPONSE", "details": {"status_code": 400, "content_length": 148, "response_time": 0.0006880760192871094}} diff --git a/22178/data/attachments/4fc1300c81cec83f.txt b/22178/data/attachments/4fc1300c81cec83f.txt deleted file mode 100644 index e3157fe4ac4c..000000000000 --- a/22178/data/attachments/4fc1300c81cec83f.txt +++ /dev/null @@ -1,4 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:39.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "7e96d3b4-b947-4b2c-a9a6-25ee407984c3", "type": "REQUEST", "details": {"url": "/dp/v1/collections", "method": "POST", "content_length": 172}} -{"levelname": "INFO", "asctime": 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"response_time": 0.0009415149688720703}} diff --git a/22178/data/attachments/50365d61de662c7f.txt b/22178/data/attachments/50365d61de662c7f.txt deleted file mode 100644 index d90b57d14bf8..000000000000 --- a/22178/data/attachments/50365d61de662c7f.txt +++ /dev/null @@ -1,3 +0,0 @@ -{"levelname": "WARNING", "asctime": "2024-10-03T15:34:08.003Z", "name": "root", "message": "Type float64 will be converted to 32 bit float and may lose precision.", "lineno": 155, "pathname": "/single-cell-data-portal/backend/layers/processing/utils/type_conversion_utils.py"} -{"levelname": "WARNING", "asctime": "2024-10-03T15:34:08.003Z", "name": "root", "message": "Type float64 will be converted to 32 bit float and may lose precision.", "lineno": 155, "pathname": "/single-cell-data-portal/backend/layers/processing/utils/type_conversion_utils.py"} -{"levelname": "WARNING", "asctime": "2024-10-03T15:34:08.003Z", "name": "root", "message": "Type float64 will be converted to 32 bit float and may lose precision.", "lineno": 155, "pathname": "/single-cell-data-portal/backend/layers/processing/utils/type_conversion_utils.py"} diff --git a/22178/data/attachments/511acc70e0140cfd.txt b/22178/data/attachments/511acc70e0140cfd.txt deleted file mode 100644 index 5601477ae386..000000000000 --- a/22178/data/attachments/511acc70e0140cfd.txt +++ /dev/null @@ -1,4 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "62109eb8-fef6-4f42-a0c8-cf117fddc95c", "type": "REQUEST", "details": {"url": "/curation/v1/collections/95909a65-e0e7-418d-956a-d9d84de21bae", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "62109eb8-fef6-4f42-a0c8-cf117fddc95c", "type": "RESPONSE", "details": {"status_code": 403, "content_length": 132, "response_time": 0.0018262863159179688}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "39e2bed1-9ebe-4b4e-bef4-1818730b32fe", "type": "REQUEST", "details": {"url": "/curation/v1/collections/0074263f-3421-4179-9744-ba40d79538a1", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "39e2bed1-9ebe-4b4e-bef4-1818730b32fe", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 3613, "response_time": 0.0039484500885009766}} diff --git a/22178/data/attachments/5219ce6e70485e33.txt b/22178/data/attachments/5219ce6e70485e33.txt deleted file mode 100644 index c0a9cbae1886..000000000000 --- a/22178/data/attachments/5219ce6e70485e33.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "e23feddf-8ef7-4a28-8a46-566ad2a1e3ce", "type": "REQUEST", "details": {"url": "/dp/v1/collections", "method": "POST", "content_length": 287}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "e23feddf-8ef7-4a28-8a46-566ad2a1e3ce", "type": "RESPONSE", "details": {"status_code": 201, "content_length": 62, "response_time": 0.0013990402221679688}} diff --git a/22178/data/attachments/522f6b4750b4ae06.txt b/22178/data/attachments/522f6b4750b4ae06.txt deleted file mode 100644 index 2e321c55184a..000000000000 --- a/22178/data/attachments/522f6b4750b4ae06.txt +++ /dev/null @@ -1,6 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:33:18.003Z", "name": "root", "message": "", "lineno": 22, "pathname": "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", "dataset_version_id": "123", "collection_version_id": "456", "error": {}, "execution_id": "arn:aws:states:us-west-2:migrate_123456789012:execution:MyStateMachine"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:18.003Z", "name": "root", "message": "Skipping slack notification for arn:aws:states:us-west-2:migrate_123456789012:execution:MyStateMachine because failure is related to a schema migration", "lineno": 33, "pathname": "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py"} -{"levelname": "ERROR", "asctime": "2024-10-03T15:33:25.003Z", "name": "processing", "message": "Failed to update dataset processing status", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 199, in _new_conn\n sock = connection.create_connection(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py\", line 60, in create_connection\n for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):\n File \"/usr/lib/python3.10/socket.py\", line 967, in getaddrinfo\n for res in _socket.getaddrinfo(host, port, family, type, proto, flags):\nsocket.gaierror: [Errno -3] Temporary failure in name resolution\n\nThe above exception was the direct cause of the following exception:\n\nTraceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 464, in send\n urllib_response = conn.urlopen(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 843, in urlopen\n retries = retries.increment(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py\", line 449, in increment\n raise reraise(type(error), error, _stacktrace)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py\", line 39, in reraise\n raise value\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 789, in urlopen\n response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 495, in _make_request\n conn.request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 96, in request\n rval = super().request(method, url, body, headers, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 441, in request\n self.endheaders()\n File \"/usr/lib/python3.10/http/client.py\", line 1278, in endheaders\n self._send_output(message_body, encode_chunked=encode_chunked)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 123, in _send_output\n self.send(msg)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 223, in send\n return super().send(str)\n File \"/usr/lib/python3.10/http/client.py\", line 976, in send\n self.connect()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 279, in connect\n self.sock = self._new_conn()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 206, in _new_conn\n raise NameResolutionError(self.host, self, e) from e\nurllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution)\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 87, in update_dataset_processing_status_to_failed\n get_business_logic().update_dataset_version_status(\n File \"/single-cell-data-portal/backend/portal/api/providers.py\", line 18, in get_business_logic\n DatabaseProvider(),\n File \"/single-cell-data-portal/backend/layers/persistence/persistence.py\", line 57, in __init__\n database_uri = CorporaDbConfig().database_uri\n File \"/single-cell-data-portal/backend/common/utils/secret_config.py\", line 54, in __getattr__\n self.load()\n File \"/single-cell-data-portal/backend/common/utils/secret_config.py\", line 88, in load\n self.load_from_aws()\n File \"/single-cell-data-portal/backend/common/utils/secret_config.py\", line 99, in load_from_aws\n secret = AwsSecret(secret_path)\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 31, in __init__\n self._load()\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 76, in _load\n response = self.secrets_mgr.describe_secret(SecretId=self.name)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 569, in _api_call\n return self._make_api_call(operation_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1005, in _make_api_call\n http, parsed_response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1029, in _make_request\n return self._endpoint.make_request(operation_model, request_dict)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 119, in make_request\n return self._send_request(request_dict, operation_model)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 200, in _send_request\n while self._needs_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 360, in _needs_retry\n responses = self._event_emitter.emit(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 412, in emit\n return self._emitter.emit(aliased_event_name, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 256, in emit\n return self._emit(event_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 239, in _emit\n response = handler(**kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 207, in __call__\n if self._checker(**checker_kwargs):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 284, in __call__\n should_retry = self._should_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 320, in _should_retry\n return self._checker(attempt_number, response, caught_exception)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 363, in __call__\n checker_response = checker(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 247, in __call__\n return self._check_caught_exception(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 416, in _check_caught_exception\n raise caught_exception\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 279, in _do_get_response\n http_response = self._send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 383, in _send\n return self.http_session.send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 493, in send\n raise EndpointConnectionError(endpoint_url=request.url, error=e)\nbotocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: \"http://localstack:4566/\""} -{"levelname": "ERROR", "asctime": "2024-10-03T15:33:37.003Z", "name": "processing", "message": "Failed to clean up artifacts.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 199, in _new_conn\n sock = connection.create_connection(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py\", line 60, in create_connection\n for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):\n File \"/usr/lib/python3.10/socket.py\", line 967, in getaddrinfo\n for res in _socket.getaddrinfo(host, port, family, type, proto, flags):\nsocket.gaierror: [Errno -3] Temporary failure in name resolution\n\nThe above exception was the direct cause of the following exception:\n\nTraceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 464, in send\n urllib_response = conn.urlopen(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 843, in urlopen\n retries = retries.increment(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py\", line 449, in increment\n raise reraise(type(error), error, _stacktrace)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py\", line 39, in reraise\n raise value\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 789, in urlopen\n response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 495, in _make_request\n conn.request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 96, in request\n rval = super().request(method, url, body, headers, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 441, in request\n self.endheaders()\n File \"/usr/lib/python3.10/http/client.py\", line 1278, in endheaders\n self._send_output(message_body, encode_chunked=encode_chunked)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 123, in _send_output\n self.send(msg)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 223, in send\n return super().send(str)\n File \"/usr/lib/python3.10/http/client.py\", line 976, in send\n self.connect()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 279, in connect\n self.sock = self._new_conn()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 206, in _new_conn\n raise NameResolutionError(self.host, self, e) from e\nurllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution)\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 192, in cleanup_artifacts\n delete_many_from_s3(artifact_bucket, object_key + \"/\")\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 107, in delete_many_from_s3\n bucket.objects.filter(Prefix=f\"{prefix}\").delete()\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 555, in batch_action\n return action(self, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py\", line 134, in __call__\n for page in parent.pages():\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 169, in pages\n for page in pages:\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 269, in __iter__\n response = self._make_request(current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 357, in _make_request\n return self._method(**current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 569, in _api_call\n return self._make_api_call(operation_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1005, in _make_api_call\n http, parsed_response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1029, in _make_request\n return self._endpoint.make_request(operation_model, request_dict)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 119, in make_request\n return self._send_request(request_dict, operation_model)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 200, in _send_request\n while self._needs_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 360, in _needs_retry\n responses = self._event_emitter.emit(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 412, in emit\n return self._emitter.emit(aliased_event_name, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 256, in emit\n return self._emit(event_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 239, in _emit\n response = handler(**kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 207, in __call__\n if self._checker(**checker_kwargs):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 284, in __call__\n should_retry = self._should_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 320, in _should_retry\n return self._checker(attempt_number, response, caught_exception)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 363, in __call__\n checker_response = checker(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 247, in __call__\n return self._check_caught_exception(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 416, in _check_caught_exception\n raise caught_exception\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 279, in _do_get_response\n http_response = self._send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 383, in _send\n return self.http_session.send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 493, in send\n raise EndpointConnectionError(endpoint_url=request.url, error=e)\nbotocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: \"http://localstack:4566/artifact-bucket?prefix=123%2F&encoding-type=url\""} -{"levelname": "ERROR", "asctime": "2024-10-03T15:33:37.003Z", "name": "processing", "message": "Failed to clean up datasets.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 194, in cleanup_artifacts\n datasets_bucket = os.environ[\"DATASETS_BUCKET\"]\n File \"/usr/lib/python3.10/os.py\", line 680, in __getitem__\n raise KeyError(key) from None\nKeyError: 'DATASETS_BUCKET'"} -{"levelname": "ERROR", "asctime": "2024-10-03T15:33:45.003Z", "name": "processing", "message": "Failed to clean up cxgs.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 199, in _new_conn\n sock = connection.create_connection(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py\", line 60, in create_connection\n for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):\n File \"/usr/lib/python3.10/socket.py\", line 967, in getaddrinfo\n for res in _socket.getaddrinfo(host, port, family, type, proto, flags):\nsocket.gaierror: [Errno -3] Temporary failure in name resolution\n\nThe above exception was the direct cause of the following exception:\n\nTraceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 464, in send\n urllib_response = conn.urlopen(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 843, in urlopen\n retries = retries.increment(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py\", line 449, in increment\n raise reraise(type(error), error, _stacktrace)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py\", line 39, in reraise\n raise value\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 789, in urlopen\n response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 495, in _make_request\n conn.request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 96, in request\n rval = super().request(method, url, body, headers, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 441, in request\n self.endheaders()\n File \"/usr/lib/python3.10/http/client.py\", line 1278, in endheaders\n self._send_output(message_body, encode_chunked=encode_chunked)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 123, in _send_output\n self.send(msg)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 223, in send\n return super().send(str)\n File \"/usr/lib/python3.10/http/client.py\", line 976, in send\n self.connect()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 279, in connect\n self.sock = self._new_conn()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 206, in _new_conn\n raise NameResolutionError(self.host, self, e) from e\nurllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution)\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 198, in cleanup_artifacts\n delete_many_from_s3(cellxgene_bucket, object_key + \".cxg/\")\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 107, in delete_many_from_s3\n bucket.objects.filter(Prefix=f\"{prefix}\").delete()\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 555, in batch_action\n return action(self, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py\", line 134, in __call__\n for page in parent.pages():\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 169, in pages\n for page in pages:\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 269, in __iter__\n response = self._make_request(current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 357, in _make_request\n return self._method(**current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 569, in _api_call\n return self._make_api_call(operation_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1005, in _make_api_call\n http, parsed_response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1029, in _make_request\n return self._endpoint.make_request(operation_model, request_dict)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 119, in make_request\n return self._send_request(request_dict, operation_model)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 200, in _send_request\n while self._needs_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 360, in _needs_retry\n responses = self._event_emitter.emit(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 412, in emit\n return self._emitter.emit(aliased_event_name, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 256, in emit\n return self._emit(event_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 239, in _emit\n response = handler(**kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 207, in __call__\n if self._checker(**checker_kwargs):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 284, in __call__\n should_retry = self._should_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 320, in _should_retry\n return self._checker(attempt_number, response, caught_exception)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 363, in __call__\n checker_response = checker(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 247, in __call__\n return self._check_caught_exception(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 416, in _check_caught_exception\n raise caught_exception\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 279, in _do_get_response\n http_response = self._send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 383, in _send\n return self.http_session.send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 493, in send\n raise EndpointConnectionError(endpoint_url=request.url, error=e)\nbotocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: \"http://localstack:4566/cellxgene-bucket?prefix=123.cxg%2F&encoding-type=url\""} diff --git a/22178/data/attachments/5267bb4b7c43a27f.txt b/22178/data/attachments/5267bb4b7c43a27f.txt deleted file mode 100644 index 37695eaf5486..000000000000 --- a/22178/data/attachments/5267bb4b7c43a27f.txt +++ /dev/null @@ -1,17 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "backend.layers.business.business", "message": "ingesting dataset", "lineno": 553, "pathname": "/single-cell-data-portal/backend/layers/business/business.py", "collection_version_id": "cec00629-8049-4f43-89ef-2b438c40807d", "url": "http://fake.url", "current_dataset_version_id": null} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "backend.layers.business.business", "message": "ingesting dataset", "lineno": 553, "pathname": "/single-cell-data-portal/backend/layers/business/business.py", "collection_version_id": "cec00629-8049-4f43-89ef-2b438c40807d", "url": null, "current_dataset_version_id": "2f5c2610-3464-42d8-b5db-e31e278a24aa"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "processing", "message": "Main: No raw h5ad update required", "lineno": 333, "pathname": "/single-cell-data-portal/backend/layers/processing/dataset_metadata_update.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "processing", "message": "Updating processing status", "lineno": 45, "pathname": "/single-cell-data-portal/backend/layers/processing/process_logic.py", "validation_message": null, "status_key": "processing", "status_value": "DatasetProcessingStatus.PENDING", "dataset_version_id": "3da1d1db-e8b8-4065-b266-44697cc4795f"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "processing", "message": "Updating processing status", "lineno": 45, "pathname": "/single-cell-data-portal/backend/layers/processing/process_logic.py", "validation_message": null, "status_key": "upload", "status_value": "DatasetUploadStatus.UPLOADING", "dataset_version_id": "3da1d1db-e8b8-4065-b266-44697cc4795f"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "processing", "message": "Start create_artifact", "lineno": 26, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "type": "METRIC"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "processing", "message": "Updating processing status", "lineno": 45, "pathname": "/single-cell-data-portal/backend/layers/processing/process_logic.py", "validation_message": null, "status_key": "h5ad", "status_value": "DatasetConversionStatus.UPLOADING", "dataset_version_id": "3da1d1db-e8b8-4065-b266-44697cc4795f"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "processing", "message": "Uploaded [3da1d1db-e8b8-4065-b266-44697cc4795f/raw.h5ad] to s3://artifact_bucket/3da1d1db-e8b8-4065-b266-44697cc4795f/raw.h5ad", "lineno": 91, "pathname": "/single-cell-data-portal/backend/layers/processing/process_logic.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "processing", "message": "Updated database with raw_h5ad.", "lineno": 93, "pathname": "/single-cell-data-portal/backend/layers/processing/process_logic.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "processing", "message": "Updating processing status", "lineno": 45, "pathname": "/single-cell-data-portal/backend/layers/processing/process_logic.py", "validation_message": null, "status_key": "h5ad", "status_value": "DatasetConversionStatus.UPLOADED", "dataset_version_id": "3da1d1db-e8b8-4065-b266-44697cc4795f"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "processing", "message": "Complete create_artifact", "lineno": 28, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "type": "METRIC"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "processing", "message": "Updating processing status", "lineno": 45, "pathname": "/single-cell-data-portal/backend/layers/processing/process_logic.py", "validation_message": null, "status_key": "upload", "status_value": "DatasetUploadStatus.UPLOADED", "dataset_version_id": "3da1d1db-e8b8-4065-b266-44697cc4795f"} -{"levelname": "ERROR", "asctime": "2024-10-03T15:33:15.003Z", "name": "processing", "message": "Cannot find labeled H5AD artifact uri for 2f5c2610-3464-42d8-b5db-e31e278a24aa.", "lineno": 353, "pathname": "/single-cell-data-portal/backend/layers/processing/dataset_metadata_update.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "processing", "message": "Updating processing status", "lineno": 45, "pathname": "/single-cell-data-portal/backend/layers/processing/process_logic.py", "validation_message": null, "status_key": "h5ad", "status_value": "DatasetConversionStatus.FAILED", "dataset_version_id": "3da1d1db-e8b8-4065-b266-44697cc4795f"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "processing", "message": "Main: Starting thread for rds update", "lineno": 357, "pathname": "/single-cell-data-portal/backend/layers/processing/dataset_metadata_update.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "processing", "message": "Main: Starting thread for cxg update", "lineno": 380, "pathname": "/single-cell-data-portal/backend/layers/processing/dataset_metadata_update.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "processing", "message": "Updating processing status", "lineno": 45, "pathname": "/single-cell-data-portal/backend/layers/processing/process_logic.py", "validation_message": null, "status_key": "processing", "status_value": "DatasetProcessingStatus.FAILURE", "dataset_version_id": "3da1d1db-e8b8-4065-b266-44697cc4795f"} diff --git a/22178/data/attachments/52b932e6a58b752a.txt b/22178/data/attachments/52b932e6a58b752a.txt deleted file mode 100644 index 2284dbe60599..000000000000 --- a/22178/data/attachments/52b932e6a58b752a.txt +++ /dev/null @@ -1,15 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:33:17.003Z", "name": "root", "message": "Reading in AnnData dataset: 27925d62-1bff-4992-be31-bd93ca4b686f.h5ad", "lineno": 185, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:17.003Z", "name": "root", "message": "Completed reading in AnnData dataset!", "lineno": 187, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:17.003Z", "name": "root", "message": "Beginning writing to CXG.", "lineno": 68, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:17.003Z", "name": "root", "message": "\t...group created, with name /single-cell-data-portal/tests/unit/backend/fixtures/27925d62-1bff-4992-be31-bd93ca4b686f.cxg", "lineno": 72, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:17.003Z", "name": "root", "message": "\t...dataset metadata saved", "lineno": 77, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:17.003Z", "name": "root", "message": "\t...dataset obs dataframe saved", "lineno": 80, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:17.003Z", "name": "root", "message": "\t...dataset var dataframe saved", "lineno": 83, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:17.003Z", "name": "root", "message": "\t...dataset uns dataframe saved", "lineno": 86, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:17.003Z", "name": "root", "message": "\t\t.../single-cell-data-portal/tests/unit/backend/fixtures/27925d62-1bff-4992-be31-bd93ca4b686f.cxg/emb/awesome_embedding embedding created", "lineno": 142, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:17.003Z", "name": "root", "message": "\t...dataset embeddings saved", "lineno": 89, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:17.003Z", "name": "root", "message": "is_sparse: False", "lineno": 101, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:17.003Z", "name": "root", "message": "create /single-cell-data-portal/tests/unit/backend/fixtures/27925d62-1bff-4992-be31-bd93ca4b686f.cxg/X", "lineno": 217, "pathname": "/single-cell-data-portal/backend/layers/processing/utils/cxg_generation_utils.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:17.003Z", "name": "root", "message": "start consolidating", "lineno": 106, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:17.003Z", "name": "root", "message": "\t...dataset X matrix saved", "lineno": 92, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:17.003Z", "name": "root", "message": "Completed writing to CXG.", "lineno": 94, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} diff --git a/22178/data/attachments/52f69846cac008b9.txt b/22178/data/attachments/52f69846cac008b9.txt deleted file mode 100644 index 44b5b4c7dacb..000000000000 --- a/22178/data/attachments/52f69846cac008b9.txt +++ /dev/null @@ -1 +0,0 @@ -{"levelname": "ERROR", "asctime": "2024-10-03T15:34:04.003Z", "name": "processing", "message": "Suppressed Exception", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/single-cell-data-portal/tests/unit/processing/test_logger.py\", line 9, in test_log_suppressed__caught\n raise ValueError(\"Test Exception\")\nValueError: Test Exception"} diff --git a/22178/data/attachments/531127e990e2bde8.txt b/22178/data/attachments/531127e990e2bde8.txt deleted file mode 100644 index ecad332a36a7..000000000000 --- a/22178/data/attachments/531127e990e2bde8.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "856e4197-5331-4be1-8383-e5a662696772", "type": "REQUEST", "details": {"url": "/curation/v1/collections/864e497d-3366-4a8a-a71e-c107b71b5658/s3-upload-credentials", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": 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"/usr/local/lib/python3.10/dist-packages/ddtrace/internal/remoteconfig/worker.py", "request_id": ""} -[PID 1 | PPID 0] Subscriber ASM is getting data -{"levelname": "DEBUG", "asctime": "2024-10-03T15:31:00.003Z", "name": "ddtrace.internal.remoteconfig._subscribers", "message": "[PID 1 | PPID 0] Subscriber ASM is getting data", "lineno": 45, "pathname": "/usr/local/lib/python3.10/dist-packages/ddtrace/internal/remoteconfig/_subscribers.py", "request_id": ""} -[PID 1 | PPID 0] Subscriber ASM got data -{"levelname": "DEBUG", "asctime": "2024-10-03T15:31:00.003Z", "name": "ddtrace.internal.remoteconfig._subscribers", "message": "[PID 1 | PPID 0] Subscriber ASM got data", "lineno": 47, "pathname": "/usr/local/lib/python3.10/dist-packages/ddtrace/internal/remoteconfig/_subscribers.py", "request_id": ""} -{"levelname": "INFO", "asctime": "2024-10-03T15:31:04.003Z", "name": "corpora-api-wmg-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "24245dcb-b665-4d88-82f7-3093f8f47473", "type": "REQUEST", "details": {"url": "/wmg/v2/markers", "method": "POST", "content_length": 118}} -{"levelname": "INFO", "asctime": "2024-10-03T15:31:04.003Z", "name": "corpora-api-wmg-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "24245dcb-b665-4d88-82f7-3093f8f47473", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 69, "response_time": 0.011915206909179688}} diff --git a/22178/data/attachments/71d9164045b95a7c.txt b/22178/data/attachments/71d9164045b95a7c.txt deleted file mode 100644 index dc767302b854..000000000000 --- a/22178/data/attachments/71d9164045b95a7c.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "ee443101-1dc5-415d-9ee1-52acca903bb7", "type": "REQUEST", "details": {"url": "/dp/v1/datasets/meta", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "ee443101-1dc5-415d-9ee1-52acca903bb7", "type": "RESPONSE", "details": {"status_code": 404, "content_length": 104, "response_time": 0.0008089542388916016}} diff --git a/22178/data/attachments/725f66b14fe1686d.txt b/22178/data/attachments/725f66b14fe1686d.txt deleted file mode 100644 index 93a9dd5e0573..000000000000 --- a/22178/data/attachments/725f66b14fe1686d.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:41.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "9115087d-c64a-4b55-be8f-8138e05749e3", "type": "REQUEST", "details": {"url": "/dp/v1/collections/7e39abf3-06c4-4ee1-86af-92583336455f/upload-links", "method": "PUT", "content_length": 113}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:41.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "9115087d-c64a-4b55-be8f-8138e05749e3", "type": "RESPONSE", "details": {"status_code": 202, "content_length": 59, "response_time": 0.003946542739868164}} diff --git a/22178/data/attachments/72a57acf0f3b7b77.txt b/22178/data/attachments/72a57acf0f3b7b77.txt deleted file mode 100644 index c9eb3123647c..000000000000 --- a/22178/data/attachments/72a57acf0f3b7b77.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "fb64fe6c-dedb-461a-be92-dbecdd9430b3", "type": "REQUEST", "details": {"url": "/dp/v1/collections/cccdde4f-013d-4d4a-9b79-2531a376671e/order-datasets", "method": "PUT", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "fb64fe6c-dedb-461a-be92-dbecdd9430b3", "type": "RESPONSE", "details": {"status_code": 400, "content_length": 115, "response_time": 0.0009095668792724609}} diff --git a/22178/data/attachments/72c38fa74529dc32.txt b/22178/data/attachments/72c38fa74529dc32.txt deleted file mode 100644 index b586338ebf07..000000000000 --- a/22178/data/attachments/72c38fa74529dc32.txt +++ /dev/null @@ -1,3 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "19fa5354-1c68-410b-b1cf-4a4e111c04c6", "type": "REQUEST", "details": {"url": "/dp/v1/datasets/e0a9d626-3a53-4cfd-aa9f-cc5fd4dd0209/asset/0c728ac2-d62f-4b60-85d0-84ac219eadd4", "method": "GET", "content_length": null}} -{"levelname": "ERROR", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "InternalServerError", "lineno": 103, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "19fa5354-1c68-410b-b1cf-4a4e111c04c6", "exc_info": "Traceback (most recent call last):\n File \"/usr/local/lib/python3.10/dist-packages/flask/app.py\", line 1823, in full_dispatch_request\n rv = self.dispatch_request()\n File \"/usr/local/lib/python3.10/dist-packages/flask/app.py\", line 1799, in dispatch_request\n return self.ensure_sync(self.view_functions[rule.endpoint])(**view_args)\n File \"/usr/local/lib/python3.10/dist-packages/connexion/decorators/decorator.py\", line 68, in wrapper\n response = function(request)\n File \"/usr/local/lib/python3.10/dist-packages/connexion/decorators/uri_parsing.py\", line 149, in wrapper\n response = function(request)\n File \"/usr/local/lib/python3.10/dist-packages/connexion/decorators/validation.py\", line 399, in wrapper\n return function(request)\n File \"/usr/local/lib/python3.10/dist-packages/connexion/decorators/response.py\", line 112, in wrapper\n response = function(request)\n File \"/usr/local/lib/python3.10/dist-packages/connexion/decorators/parameter.py\", line 120, in wrapper\n return function(**kwargs)\n File \"/single-cell-data-portal/backend/portal/api/portal_api.py\", line 743, in get_dataset_asset\n raise ServerErrorHTTPException() from None\nbackend.common.utils.http_exceptions.ServerErrorHTTPException"} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "19fa5354-1c68-410b-b1cf-4a4e111c04c6", "type": "RESPONSE", "details": {"status_code": 500, "content_length": 159, "response_time": 0.002352476119995117}} diff --git a/22178/data/attachments/733099f347a869ec.txt b/22178/data/attachments/733099f347a869ec.txt deleted file mode 100644 index c74ea567a9bb..000000000000 --- a/22178/data/attachments/733099f347a869ec.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "56f5eb97-3bc2-4fb4-b0bb-5f56287c56c7", "type": "REQUEST", "details": {"url": "/curation/v1/collections/683757bb-f907-4957-8945-2f4485eaa898/versions", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "56f5eb97-3bc2-4fb4-b0bb-5f56287c56c7", "type": "RESPONSE", "details": {"status_code": 410, "content_length": 105, "response_time": 0.0007641315460205078}} diff --git a/22178/data/attachments/734dc1ba17374078.txt b/22178/data/attachments/734dc1ba17374078.txt deleted file mode 100644 index 97f732b05771..000000000000 --- a/22178/data/attachments/734dc1ba17374078.txt +++ /dev/null @@ -1,15 +0,0 @@ -INFO root:h5ad_data_file.py:185 Reading in AnnData dataset: 3470e600-e5f5-4c7c-aec0-872a70fd9a63.h5ad -INFO root:h5ad_data_file.py:187 Completed reading in AnnData dataset! -INFO root:h5ad_data_file.py:68 Beginning writing to CXG. -INFO root:h5ad_data_file.py:72 ...group created, with name /single-cell-data-portal/tests/unit/backend/fixtures/3470e600-e5f5-4c7c-aec0-872a70fd9a63.cxg -INFO root:h5ad_data_file.py:77 ...dataset metadata saved -INFO root:h5ad_data_file.py:80 ...dataset obs dataframe saved -INFO root:h5ad_data_file.py:83 ...dataset var dataframe saved -INFO root:h5ad_data_file.py:86 ...dataset uns dataframe saved -INFO root:h5ad_data_file.py:142 .../single-cell-data-portal/tests/unit/backend/fixtures/3470e600-e5f5-4c7c-aec0-872a70fd9a63.cxg/emb/awesome_embedding embedding created -INFO root:h5ad_data_file.py:89 ...dataset embeddings saved -INFO root:h5ad_data_file.py:101 is_sparse: False -INFO root:cxg_generation_utils.py:217 create /single-cell-data-portal/tests/unit/backend/fixtures/3470e600-e5f5-4c7c-aec0-872a70fd9a63.cxg/X -INFO root:h5ad_data_file.py:106 start consolidating -INFO root:h5ad_data_file.py:92 ...dataset X matrix saved -INFO root:h5ad_data_file.py:94 Completed writing to CXG. \ No newline at end of file diff --git a/22178/data/attachments/737c8c3e9aafd8f8.txt b/22178/data/attachments/737c8c3e9aafd8f8.txt deleted file mode 100644 index 82f53ae54241..000000000000 --- a/22178/data/attachments/737c8c3e9aafd8f8.txt +++ /dev/null @@ -1,3 +0,0 @@ -{"levelname": "ERROR", "asctime": "2024-10-03T15:34:04.003Z", "name": "processing", "message": "Failed to clean up artifacts.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 192, in cleanup_artifacts\n delete_many_from_s3(artifact_bucket, object_key + \"/\")\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1114, in __call__\n return self._mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1118, in _mock_call\n return self._execute_mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1173, in _execute_mock_call\n raise effect\nException: Boom!"} -{"levelname": "ERROR", "asctime": "2024-10-03T15:34:04.003Z", "name": "processing", "message": "Failed to clean up datasets.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 195, in cleanup_artifacts\n delete_many_from_s3(datasets_bucket, object_key + \".\")\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1114, in __call__\n return self._mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1118, in _mock_call\n return self._execute_mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1173, in _execute_mock_call\n raise effect\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 192, in cleanup_artifacts\n delete_many_from_s3(artifact_bucket, object_key + \"/\")\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1114, in __call__\n return self._mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1118, in _mock_call\n return self._execute_mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1173, in _execute_mock_call\n raise effect\nException: Boom!"} -{"levelname": "ERROR", "asctime": "2024-10-03T15:34:04.003Z", "name": "processing", "message": "Failed to clean up cxgs.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 198, in cleanup_artifacts\n delete_many_from_s3(cellxgene_bucket, object_key + \".cxg/\")\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1114, in __call__\n return self._mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1118, in _mock_call\n return self._execute_mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1173, in _execute_mock_call\n raise effect\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 195, in cleanup_artifacts\n delete_many_from_s3(datasets_bucket, object_key + \".\")\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1114, in __call__\n return self._mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1118, in _mock_call\n return self._execute_mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1173, in _execute_mock_call\n raise effect\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 192, in cleanup_artifacts\n delete_many_from_s3(artifact_bucket, object_key + \"/\")\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1114, in __call__\n return self._mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1118, in _mock_call\n return self._execute_mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1173, in _execute_mock_call\n raise effect\nException: Boom!"} diff --git a/22178/data/attachments/7386e4a6fcd92241.txt b/22178/data/attachments/7386e4a6fcd92241.txt deleted file mode 100644 index 50d007776153..000000000000 --- a/22178/data/attachments/7386e4a6fcd92241.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:41.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "026674a2-3ca1-436d-b560-2c930a8768a0", "type": "REQUEST", "details": {"url": "/dp/v1/auth/key", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:41.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "026674a2-3ca1-436d-b560-2c930a8768a0", "type": "RESPONSE", "details": {"status_code": 401, "content_length": 119, "response_time": 0.0006587505340576172}} diff --git a/22178/data/attachments/743efba5e8f6ddef.txt b/22178/data/attachments/743efba5e8f6ddef.txt deleted file mode 100644 index f977851c7802..000000000000 --- a/22178/data/attachments/743efba5e8f6ddef.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:41.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "e23c5be5-e72c-489e-b64b-7e480ad85f71", "type": "REQUEST", "details": {"url": "/dp/v1/collections/5ccfc2d6-8806-45cb-9ef9-cca035f19fcc/upload-links", "method": "POST", "content_length": 67}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:41.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "e23c5be5-e72c-489e-b64b-7e480ad85f71", "type": "RESPONSE", "details": {"status_code": 403, "content_length": 132, "response_time": 0.0027742385864257812}} diff --git a/22178/data/attachments/75138515496a24ed.txt b/22178/data/attachments/75138515496a24ed.txt deleted file mode 100644 index 778fe9e712a4..000000000000 --- a/22178/data/attachments/75138515496a24ed.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:31:13.003Z", "name": "corpora-api-wmg-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "80953247-661e-45bb-b7be-dc3c6684871d", "type": "REQUEST", "details": {"url": "/wmg/v2/filters", "method": "POST", "content_length": 442}} -{"levelname": "INFO", "asctime": "2024-10-03T15:31:13.003Z", "name": "corpora-api-wmg-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "80953247-661e-45bb-b7be-dc3c6684871d", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 1988, "response_time": 0.0032558441162109375}} diff --git a/22178/data/attachments/754504ed68565782.txt b/22178/data/attachments/754504ed68565782.txt deleted file mode 100644 index 059f5676a993..000000000000 --- a/22178/data/attachments/754504ed68565782.txt +++ /dev/null @@ -1,4 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "0781c185-b530-4b26-8a10-ab844db4af81", "type": "REQUEST", "details": {"url": "/curation/v1/collections/39122988-fa3b-4147-8ce3-c62dbd8a832a", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "0781c185-b530-4b26-8a10-ab844db4af81", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 1056, "response_time": 0.0015900135040283203}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": 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76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "cf1a67f3-1eb3-4f52-abeb-200d40cc1ed7", "type": "REQUEST", "details": {"url": "/curation/v1/collections/1e70acd7-ebe3-4dfe-92b4-010e601b6584/datasets/25dc6199-aa24-4dfc-ae39-5748e6019aaa", "method": "PATCH", "content_length": 22}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "cf1a67f3-1eb3-4f52-abeb-200d40cc1ed7", "type": "RESPONSE", "details": {"status_code": 405, "content_length": 149, "response_time": 0.0033576488494873047}} diff --git a/22178/data/attachments/7b14b0bf7ea302a3.txt b/22178/data/attachments/7b14b0bf7ea302a3.txt deleted file mode 100644 index 04edb250ba20..000000000000 --- a/22178/data/attachments/7b14b0bf7ea302a3.txt +++ /dev/null @@ -1,6 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "ebe68ddd-e42e-4f18-bdf7-6c7c72c1f707", "type": "REQUEST", "details": {"url": "/curation/v1/collections/96ebc9eb-f789-444d-b516-5a468263f426", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "ebe68ddd-e42e-4f18-bdf7-6c7c72c1f707", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 1066, "response_time": 0.0015683174133300781}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "427d6eab-d7ac-4c97-9901-5affa5423543", "type": "REQUEST", "details": {"url": "/curation/v1/collections/96ebc9eb-f789-444d-b516-5a468263f426", "method": "PATCH", "content_length": 32}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "427d6eab-d7ac-4c97-9901-5affa5423543", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 552, "response_time": 0.001935720443725586}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "17117138-21b7-483d-b68e-024738594ca6", "type": "REQUEST", "details": {"url": "/curation/v1/collections/96ebc9eb-f789-444d-b516-5a468263f426", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "17117138-21b7-483d-b68e-024738594ca6", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 1031, "response_time": 0.0015025138854980469}} diff --git a/22178/data/attachments/7b4506aa52703b72.txt b/22178/data/attachments/7b4506aa52703b72.txt deleted file mode 100644 index 9da6a1ba5a7a..000000000000 --- a/22178/data/attachments/7b4506aa52703b72.txt +++ /dev/null @@ -1,4 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "e04c3bdc-eb30-4610-ab9d-e90cf5c205f9", "type": "REQUEST", "details": {"url": "/dp/v1/collections/9f48466c-2f4d-40e3-ac1e-0c65830f7b7c/order-datasets", "method": "PUT", "content_length": 94}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "e04c3bdc-eb30-4610-ab9d-e90cf5c205f9", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 0, "response_time": 0.00436711311340332}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "f9822f96-00bc-483c-8d7e-52ae8142b1b2", "type": "REQUEST", "details": {"url": "/dp/v1/collections/9f48466c-2f4d-40e3-ac1e-0c65830f7b7c", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "f9822f96-00bc-483c-8d7e-52ae8142b1b2", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 8351, "response_time": 0.006412029266357422}} diff --git a/22178/data/attachments/7bb365db8cb7dee9.txt b/22178/data/attachments/7bb365db8cb7dee9.txt deleted file mode 100644 index 2da164f05d0b..000000000000 --- a/22178/data/attachments/7bb365db8cb7dee9.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:33:16.003Z", "name": "root", "message": "s3_event", "lineno": 60, "pathname": "/single-cell-data-portal/backend/layers/processing/submissions/app.py", "Records": [{"s3": {"bucket": {"name": "some_bucket"}, "object": {"key": "super/a1d3f1e2-371d-4524-b1fe-5077ff04b5a6/00c4c682-3232-413e-abe4-7eddcf4a4f58", "size": 0}}}]} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:16.003Z", "name": "root", "message": "", "lineno": 85, "pathname": "/single-cell-data-portal/backend/layers/processing/submissions/app.py", "collection_owner": "test_user_id", "dataset_id": "00c4c682-3232-413e-abe4-7eddcf4a4f58"} diff --git a/22178/data/attachments/7bc7d37d5dd4fff8.txt b/22178/data/attachments/7bc7d37d5dd4fff8.txt deleted file mode 100644 index 50b585691974..000000000000 --- a/22178/data/attachments/7bc7d37d5dd4fff8.txt +++ /dev/null @@ -1,301 +0,0 @@ -INFO root:app.py:22 {'dataset_version_id': '123', 'collection_version_id': '456', 'error': {}, 'execution_id': 'arn:aws:states:us-west-2:123456789012:execution:MyStateMachine'} -ERROR processing:logger.py:41 Failed to update dataset processing status -Traceback (most recent call last): - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 199, in _new_conn - sock = connection.create_connection( - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py", line 60, in create_connection - for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM): - File "/usr/lib/python3.10/socket.py", line 967, in getaddrinfo - for res in _socket.getaddrinfo(host, port, family, type, proto, flags): -socket.gaierror: [Errno -3] Temporary failure in name resolution - -The above exception was the direct cause of the following exception: - -Traceback (most recent call last): - File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 464, in send - urllib_response = conn.urlopen( - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 843, in urlopen - retries = retries.increment( - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py", line 449, in increment - raise reraise(type(error), error, _stacktrace) - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py", line 39, in reraise - raise value - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 789, in urlopen - response = self._make_request( - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 495, in _make_request - conn.request( - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 96, in request - rval = super().request(method, url, body, headers, *args, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 441, in request - self.endheaders() - File "/usr/lib/python3.10/http/client.py", line 1278, in endheaders - self._send_output(message_body, encode_chunked=encode_chunked) - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 123, in _send_output - self.send(msg) - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 223, in send - return super().send(str) - File "/usr/lib/python3.10/http/client.py", line 976, in send - self.connect() - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 279, in connect - self.sock = self._new_conn() - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 206, in _new_conn - raise NameResolutionError(self.host, self, e) from e -urllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution) - -During handling of the above exception, another exception occurred: - -Traceback (most recent call last): - File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 87, in update_dataset_processing_status_to_failed - get_business_logic().update_dataset_version_status( - File "/single-cell-data-portal/backend/portal/api/providers.py", line 18, in get_business_logic - DatabaseProvider(), - File "/single-cell-data-portal/backend/layers/persistence/persistence.py", line 57, in __init__ - database_uri = CorporaDbConfig().database_uri - File "/single-cell-data-portal/backend/common/utils/secret_config.py", line 54, in __getattr__ - self.load() - File "/single-cell-data-portal/backend/common/utils/secret_config.py", line 88, in load - self.load_from_aws() - File "/single-cell-data-portal/backend/common/utils/secret_config.py", line 99, in load_from_aws - secret = AwsSecret(secret_path) - File "/single-cell-data-portal/backend/common/utils/aws.py", line 31, in __init__ - self._load() - File "/single-cell-data-portal/backend/common/utils/aws.py", line 76, in _load - response = self.secrets_mgr.describe_secret(SecretId=self.name) - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 569, in _api_call - return self._make_api_call(operation_name, kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1005, in _make_api_call - http, parsed_response = self._make_request( - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1029, in _make_request - return self._endpoint.make_request(operation_model, request_dict) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 119, in make_request - return self._send_request(request_dict, operation_model) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 200, in _send_request - while self._needs_retry( - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 360, in _needs_retry - responses = self._event_emitter.emit( - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 412, in emit - return self._emitter.emit(aliased_event_name, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 256, in emit - return self._emit(event_name, kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 239, in _emit - response = handler(**kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 207, in __call__ - if self._checker(**checker_kwargs): - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 284, in __call__ - should_retry = self._should_retry( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 320, in _should_retry - return self._checker(attempt_number, response, caught_exception) - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 363, in __call__ - checker_response = checker( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 247, in __call__ - return self._check_caught_exception( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 416, in _check_caught_exception - raise caught_exception - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 279, in _do_get_response - http_response = self._send(request) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 383, in _send - return self.http_session.send(request) - File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 493, in send - raise EndpointConnectionError(endpoint_url=request.url, error=e) -botocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: "http://localstack:4566/" -ERROR processing:logger.py:41 Failed to clean up artifacts. -Traceback (most recent call last): - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 199, in _new_conn - sock = connection.create_connection( - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py", line 60, in create_connection - for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM): - File "/usr/lib/python3.10/socket.py", line 967, in getaddrinfo - for res in _socket.getaddrinfo(host, port, family, type, proto, flags): -socket.gaierror: [Errno -3] Temporary failure in name resolution - -The above exception was the direct cause of the following exception: - -Traceback (most recent call last): - File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 464, in send - urllib_response = conn.urlopen( - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 843, in urlopen - retries = retries.increment( - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py", line 449, in increment - raise reraise(type(error), error, _stacktrace) - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py", line 39, in reraise - raise value - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 789, in urlopen - response = self._make_request( - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 495, in _make_request - conn.request( - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 96, in request - rval = super().request(method, url, body, headers, *args, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 441, in request - self.endheaders() - File "/usr/lib/python3.10/http/client.py", line 1278, in endheaders - self._send_output(message_body, encode_chunked=encode_chunked) - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 123, in _send_output - self.send(msg) - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 223, in send - return super().send(str) - File "/usr/lib/python3.10/http/client.py", line 976, in send - self.connect() - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 279, in connect - self.sock = self._new_conn() - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 206, in _new_conn - raise NameResolutionError(self.host, self, e) from e -urllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution) - -During handling of the above exception, another exception occurred: - -Traceback (most recent call last): - File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 192, in cleanup_artifacts - delete_many_from_s3(artifact_bucket, object_key + "/") - File "/single-cell-data-portal/backend/common/utils/aws.py", line 107, in delete_many_from_s3 - bucket.objects.filter(Prefix=f"{prefix}").delete() - File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 555, in batch_action - return action(self, *args, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py", line 134, in __call__ - for page in parent.pages(): - File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 169, in pages - for page in pages: - File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 269, in __iter__ - response = self._make_request(current_kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 357, in _make_request - return self._method(**current_kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 569, in _api_call - return self._make_api_call(operation_name, kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1005, in _make_api_call - http, parsed_response = self._make_request( - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1029, in _make_request - return self._endpoint.make_request(operation_model, request_dict) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 119, in make_request - return self._send_request(request_dict, operation_model) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 200, in _send_request - while self._needs_retry( - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 360, in _needs_retry - responses = self._event_emitter.emit( - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 412, in emit - return self._emitter.emit(aliased_event_name, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 256, in emit - return self._emit(event_name, kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 239, in _emit - response = handler(**kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 207, in __call__ - if self._checker(**checker_kwargs): - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 284, in __call__ - should_retry = self._should_retry( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 320, in _should_retry - return self._checker(attempt_number, response, caught_exception) - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 363, in __call__ - checker_response = checker( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 247, in __call__ - return self._check_caught_exception( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 416, in _check_caught_exception - raise caught_exception - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 279, in _do_get_response - http_response = self._send(request) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 383, in _send - return self.http_session.send(request) - File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 493, in send - raise EndpointConnectionError(endpoint_url=request.url, error=e) -botocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: "http://localstack:4566/artifact-bucket?prefix=123%2F&encoding-type=url" -ERROR processing:logger.py:41 Failed to clean up datasets. -Traceback (most recent call last): - File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 194, in cleanup_artifacts - datasets_bucket = os.environ["DATASETS_BUCKET"] - File "/usr/lib/python3.10/os.py", line 680, in __getitem__ - raise KeyError(key) from None -KeyError: 'DATASETS_BUCKET' -ERROR processing:logger.py:41 Failed to clean up cxgs. -Traceback (most recent call last): - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 199, in _new_conn - sock = connection.create_connection( - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py", line 60, in create_connection - for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM): - File "/usr/lib/python3.10/socket.py", line 967, in getaddrinfo - for res in _socket.getaddrinfo(host, port, family, type, proto, flags): -socket.gaierror: [Errno -3] Temporary failure in name resolution - -The above exception was the direct cause of the following exception: - -Traceback (most recent call last): - File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 464, in send - urllib_response = conn.urlopen( - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 843, in urlopen - retries = retries.increment( - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py", line 449, in increment - raise reraise(type(error), error, _stacktrace) - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py", line 39, in reraise - raise value - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 789, in urlopen - response = self._make_request( - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 495, in _make_request - conn.request( - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 96, in request - rval = super().request(method, url, body, headers, *args, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 441, in request - self.endheaders() - File "/usr/lib/python3.10/http/client.py", line 1278, in endheaders - self._send_output(message_body, encode_chunked=encode_chunked) - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 123, in _send_output - self.send(msg) - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 223, in send - return super().send(str) - File "/usr/lib/python3.10/http/client.py", line 976, in send - self.connect() - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 279, in connect - self.sock = self._new_conn() - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 206, in _new_conn - raise NameResolutionError(self.host, self, e) from e -urllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution) - -During handling of the above exception, another exception occurred: - -Traceback (most recent call last): - File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 198, in cleanup_artifacts - delete_many_from_s3(cellxgene_bucket, object_key + ".cxg/") - File "/single-cell-data-portal/backend/common/utils/aws.py", line 107, in delete_many_from_s3 - bucket.objects.filter(Prefix=f"{prefix}").delete() - File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 555, in batch_action - return action(self, *args, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py", line 134, in __call__ - for page in parent.pages(): - File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 169, in pages - for page in pages: - File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 269, in __iter__ - response = self._make_request(current_kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 357, in _make_request - return self._method(**current_kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 569, in _api_call - return self._make_api_call(operation_name, kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1005, in _make_api_call - http, parsed_response = self._make_request( - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1029, in _make_request - return self._endpoint.make_request(operation_model, request_dict) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 119, in make_request - return self._send_request(request_dict, operation_model) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 200, in _send_request - while self._needs_retry( - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 360, in _needs_retry - responses = self._event_emitter.emit( - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 412, in emit - return self._emitter.emit(aliased_event_name, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 256, in emit - return self._emit(event_name, kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 239, in _emit - response = handler(**kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 207, in __call__ - if self._checker(**checker_kwargs): - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 284, in __call__ - should_retry = self._should_retry( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 320, in _should_retry - return self._checker(attempt_number, response, caught_exception) - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 363, in __call__ - checker_response = checker( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 247, in __call__ - return self._check_caught_exception( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 416, in _check_caught_exception - raise caught_exception - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 279, in _do_get_response - http_response = self._send(request) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 383, in _send - return self.http_session.send(request) - File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 493, in send - raise EndpointConnectionError(endpoint_url=request.url, error=e) -botocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: 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a/22178/data/attachments/9d3d18c744b182cc.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:34:04.003Z", "name": "processing", "message": "Start download_from_source_uri", "lineno": 26, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "type": "METRIC"} -{"levelname": "INFO", "asctime": "2024-10-03T15:34:04.003Z", "name": "processing", "message": "Complete download_from_source_uri", "lineno": 28, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "type": "METRIC"} diff --git a/22178/data/attachments/9d4c255a501e37e6.txt b/22178/data/attachments/9d4c255a501e37e6.txt deleted file mode 100644 index 9d14cc75af62..000000000000 --- a/22178/data/attachments/9d4c255a501e37e6.txt +++ /dev/null @@ -1,14 +0,0 @@ -INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 1760cfbc-79b0-4d38-9e32-f6a4ea2bbf5b, 'url': 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'swap_modifier': 0, 'min_vcpu': 2, 'max_vcpu': 96, 'max_swap_memory_MB': 300000, 'memory_per_vcpu': 8000, 'uncompressed_size_MB': 95.367431640625, 'max_swap': 0, 'memory': 16000, 'vcpus': 2} -INFO processing:process_download.py:200 {'JobDefinitionName': 'dp-test-fake-stack-ingest-process-be1874b2-4782-4f58-9717-87970be5b692', 'Vcpus': 2, 'Memory': 16000, 'LinuxParameters': {'Swappiness': 60, 'MaxSwap': 0}} \ No newline at end of file diff --git a/22178/data/attachments/9d6bb36b2fb09cae.txt b/22178/data/attachments/9d6bb36b2fb09cae.txt deleted file mode 100644 index b0b73f0f49b7..000000000000 --- a/22178/data/attachments/9d6bb36b2fb09cae.txt +++ /dev/null @@ -1,3 +0,0 @@ -{"levelname": "ERROR", "asctime": "2024-10-03T15:34:04.003Z", "name": "processing", "message": "Failed to clean up artifacts.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 191, in cleanup_artifacts\n artifact_bucket = os.environ[\"ARTIFACT_BUCKET\"]\n File \"/usr/lib/python3.10/os.py\", line 680, in __getitem__\n raise KeyError(key) from None\nKeyError: 'ARTIFACT_BUCKET'"} -{"levelname": "ERROR", "asctime": "2024-10-03T15:34:04.003Z", "name": "processing", "message": "Failed to clean up datasets.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 194, in cleanup_artifacts\n datasets_bucket = os.environ[\"DATASETS_BUCKET\"]\n File \"/usr/lib/python3.10/os.py\", line 680, in __getitem__\n raise KeyError(key) from None\nKeyError: 'DATASETS_BUCKET'"} -{"levelname": "ERROR", "asctime": "2024-10-03T15:34:04.003Z", "name": "processing", "message": "Failed to clean up cxgs.", "lineno": 41, "pathname": 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a/22178/data/attachments/a7237974f59bd77d.txt +++ /dev/null @@ -1,14 +0,0 @@ -INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 3a447f05-aca3-4b42-be93-7d3ac810b218, 'url': 'nothing', 'current_dataset_version_id': None} -INFO processing:process_seurat.py:80 enforce canonical format in X -INFO processing:process_seurat.py:83 enforce canonical format in raw.X -INFO processing:process_logic.py:113 Converting local.h5ad -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:119 Finished converting in 0:00:00.000520 -INFO processing:logger.py:26 Start create_artifact -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:91 Uploaded [53a4c64f-ed4d-4f20-896d-e05017e38678/local.rds] to s3://fake_bucket_name/53a4c64f-ed4d-4f20-896d-e05017e38678/local.rds -INFO processing:process_logic.py:93 Updated database with rds. -INFO processing:process_logic.py:100 Uploaded 53a4c64f-ed4d-4f20-896d-e05017e38678.rds to s3://fake_datasets_bucket/53a4c64f-ed4d-4f20-896d-e05017e38678/53a4c64f-ed4d-4f20-896d-e05017e38678.rds -INFO processing:process_logic.py:45 Updating processing status -INFO processing:logger.py:28 Complete create_artifact \ No newline at end of file diff --git a/22178/data/attachments/a73d50a7f6acc6fe.txt b/22178/data/attachments/a73d50a7f6acc6fe.txt deleted file mode 100644 index 983e951ea044..000000000000 --- a/22178/data/attachments/a73d50a7f6acc6fe.txt +++ /dev/null @@ -1 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:34:07.003Z", "name": "backend.layers.business.business", "message": "Restoring previous dataset version", "lineno": 1329, "pathname": "/single-cell-data-portal/backend/layers/business/business.py", "dataset_id": "a72afeab-e721-47c5-8d42-08060e46e584", "replace_version_id": 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@@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "168dc6a3-1ce3-4710-9728-7936d2a7d574", "type": "REQUEST", "details": {"url": "/curation/ui/", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "168dc6a3-1ce3-4710-9728-7936d2a7d574", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 1490, "response_time": 0.004412174224853516}} diff --git a/22178/data/attachments/a984c8d712522b38.txt b/22178/data/attachments/a984c8d712522b38.txt deleted file mode 100644 index a18df965e348..000000000000 --- a/22178/data/attachments/a984c8d712522b38.txt +++ /dev/null @@ -1 +0,0 @@ -INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 15fe1e2d-29c2-4090-b445-5668efeb616e, 'url': 'http://fake.url', 'current_dataset_version_id': None} \ No newline at end of file diff --git a/22178/data/attachments/abd565efda3739df.txt b/22178/data/attachments/abd565efda3739df.txt deleted file mode 100644 index fad76fcb49d8..000000000000 --- a/22178/data/attachments/abd565efda3739df.txt +++ /dev/null @@ -1,3 +0,0 @@ -{"levelname": "WARNING", "asctime": "2024-10-03T15:34:07.003Z", "name": "root", "message": "Type float64 will be converted to 32 bit float and may lose precision.", "lineno": 155, "pathname": "/single-cell-data-portal/backend/layers/processing/utils/type_conversion_utils.py"} -{"levelname": "WARNING", "asctime": "2024-10-03T15:34:07.003Z", "name": "root", "message": "Type float64 will be converted to 32 bit float and may lose precision.", "lineno": 155, "pathname": 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create_deep_zoom_assets\n image_array, _ = self._fetch_image(content)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1114, in __call__\n return self._mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1118, in _mock_call\n return self._execute_mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1173, in _execute_mock_call\n raise effect\nException: Test exception"} diff --git a/22178/data/attachments/ae24594d3490ea14.txt b/22178/data/attachments/ae24594d3490ea14.txt deleted file mode 100644 index 0c202b60e5a2..000000000000 --- a/22178/data/attachments/ae24594d3490ea14.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "16e51080-e865-4167-a406-7c8eaaaa688d", "type": "REQUEST", "details": {"url": "/curation/v1/collections", "method": 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backend.layers.business.business:business.py:1365 {'message': 'Restoring previous collection version', 'collection_id': 'c7347a2d-f550-4285-ae55-061146019aa1', 'replace_version_id': '3fea2037-0d53-4c06-9653-da687338a60d', 'restored_version_id': '39a7ec86-03da-459d-b31f-ee82d3a063ff'} \ No newline at end of file diff --git a/22178/data/attachments/c719f84eede1cdec.txt b/22178/data/attachments/c719f84eede1cdec.txt deleted file mode 100644 index e1c7705434cb..000000000000 --- a/22178/data/attachments/c719f84eede1cdec.txt +++ /dev/null @@ -1,3 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": "backend.layers.business.business", "message": "ingesting dataset", "lineno": 553, "pathname": "/single-cell-data-portal/backend/layers/business/business.py", "collection_version_id": "b576d121-3b9d-450b-80b7-d7b52e4a6d4f", "url": "http://fake.url", "current_dataset_version_id": null} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:15.003Z", "name": 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backend.layers.business.business:business.py:1365 {'message': 'Restoring previous collection version', 'collection_id': '4a73fa23-347b-4643-a7f8-cd134634579c', 'replace_version_id': '8853185d-51a3-485b-892f-cfe826944e47', 'restored_version_id': '33aeb68b-7799-4fa6-afbd-5edfaf9627d6'} -INFO backend.layers.business.business:business.py:1365 {'message': 'Restoring previous collection version', 'collection_id': 'cc6ac1a4-064a-4a01-a123-a3ceb6d33779', 'replace_version_id': '2330928c-10cf-486b-a9fc-cf31c53545b0', 'restored_version_id': 'dd88fdc8-c4e8-423d-ae59-b973ce13f124'} \ No newline at end of file diff --git a/22178/data/attachments/ca38f10c350fc451.txt b/22178/data/attachments/ca38f10c350fc451.txt deleted file mode 100644 index 33a7da762725..000000000000 --- a/22178/data/attachments/ca38f10c350fc451.txt +++ /dev/null @@ -1,4 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": 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"content_length": 17}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "c5f89f9c-0db2-4fca-8029-80987c3cc460", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 537, "response_time": 0.0019838809967041016}} diff --git a/22178/data/attachments/cab5ed609f1fb7ad.txt b/22178/data/attachments/cab5ed609f1fb7ad.txt deleted file mode 100644 index 1b86bf82bb01..000000000000 --- a/22178/data/attachments/cab5ed609f1fb7ad.txt +++ /dev/null @@ -1,17 +0,0 @@ -INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': eb8f13e4-9259-4849-8da3-5f20819f6780, 'url': 'http://fake.url', 'current_dataset_version_id': None} -INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': eb8f13e4-9259-4849-8da3-5f20819f6780, 'url': None, 'current_dataset_version_id': 96d23746-df40-4d8b-a027-b5ce50508aff} -INFO processing:dataset_metadata_update.py:333 Main: No raw h5ad update required -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:45 Updating processing status -INFO processing:logger.py:26 Start create_artifact -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:91 Uploaded [bfe7668b-ea3f-4001-8e76-02980e02cb67/raw.h5ad] to s3://artifact_bucket/bfe7668b-ea3f-4001-8e76-02980e02cb67/raw.h5ad -INFO processing:process_logic.py:93 Updated database with raw_h5ad. -INFO processing:process_logic.py:45 Updating processing status -INFO processing:logger.py:28 Complete create_artifact -INFO processing:process_logic.py:45 Updating processing status -INFO processing:dataset_metadata_update.py:337 Main: Starting thread for h5ad update -INFO processing:dataset_metadata_update.py:357 Main: Starting thread for rds update -ERROR processing:dataset_metadata_update.py:397 Cannot find cxg artifact uri for 96d23746-df40-4d8b-a027-b5ce50508aff. -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:45 Updating processing status \ No newline at end of file diff --git a/22178/data/attachments/cab9f8393d6945a1.txt b/22178/data/attachments/cab9f8393d6945a1.txt deleted file mode 100644 index 42e16e7b5e73..000000000000 --- a/22178/data/attachments/cab9f8393d6945a1.txt +++ /dev/null @@ -1,2 +0,0 @@ -INFO backend.layers.business.business:business.py:1329 {'message': 'Restoring previous dataset version', 'dataset_id': 'a5eb4bcf-64e9-47c9-90c2-b09827cac6a9', 'replace_version_id': 'ea01b897-0982-4f2f-b8fd-96406a4dc547', 'restored_version_id': 'fee0efeb-2777-43df-bff5-cd611ceedca0'} -INFO backend.layers.business.business:business.py:1329 {'message': 'Restoring previous dataset version', 'dataset_id': '025690c8-a8a4-44ea-9d74-76b7bafc03ce', 'replace_version_id': 'd7a8fcf3-5d31-4f97-ab9e-cbd55f0af43e', 'restored_version_id': '7f8d439c-0ca8-4514-871c-89671c116676'} \ No newline at end of file diff --git a/22178/data/attachments/cb121bd71ed4c4b6.txt b/22178/data/attachments/cb121bd71ed4c4b6.txt deleted file mode 100644 index 3b31944b9222..000000000000 --- a/22178/data/attachments/cb121bd71ed4c4b6.txt +++ /dev/null @@ -1,2 +0,0 @@ -INFO root:h5ad_data_file.py:185 Reading in AnnData dataset: c7478de1-f485-43fe-a4f6-a8802b09aab9.h5ad -INFO root:h5ad_data_file.py:187 Completed reading in AnnData dataset! \ No newline at end of file diff --git a/22178/data/attachments/cbc4471badd78164.txt b/22178/data/attachments/cbc4471badd78164.txt deleted file mode 100644 index 92d8298136e5..000000000000 --- a/22178/data/attachments/cbc4471badd78164.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": 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"asctime": "2024-10-03T15:33:18.003Z", "name": "root", "message": "\t...dataset obs dataframe saved", "lineno": 80, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:18.003Z", "name": "root", "message": "\t...dataset var dataframe saved", "lineno": 83, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:18.003Z", "name": "root", "message": "\t...dataset uns dataframe saved", "lineno": 86, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:18.003Z", "name": "root", "message": "\t\t.../single-cell-data-portal/tests/unit/backend/fixtures/4f6c4641-44b2-482c-89a2-fc4f8c083c31.cxg/emb/awesome_embedding embedding created", "lineno": 142, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:18.003Z", "name": "root", "message": "\t...dataset embeddings saved", "lineno": 89, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:18.003Z", "name": "root", "message": "is_sparse: False", "lineno": 101, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:18.003Z", "name": "root", "message": "create /single-cell-data-portal/tests/unit/backend/fixtures/4f6c4641-44b2-482c-89a2-fc4f8c083c31.cxg/X", "lineno": 217, "pathname": "/single-cell-data-portal/backend/layers/processing/utils/cxg_generation_utils.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:18.003Z", "name": "root", "message": "start consolidating", "lineno": 106, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:18.003Z", "name": "root", "message": "\t...dataset X matrix saved", "lineno": 92, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} -{"levelname": "INFO", "asctime": "2024-10-03T15:33:18.003Z", "name": "root", "message": "Completed writing to CXG.", "lineno": 94, "pathname": "/single-cell-data-portal/backend/layers/processing/h5ad_data_file.py"} diff --git a/22178/data/attachments/d5343ca034421961.txt b/22178/data/attachments/d5343ca034421961.txt deleted file mode 100644 index 235ebea52575..000000000000 --- a/22178/data/attachments/d5343ca034421961.txt +++ /dev/null @@ -1,8 +0,0 @@ -headers - {'host': 'localhost', 'Cookie': 'cxguser=eyJhY2Nlc3NfdG9rZW4iOiAib3duZXIiLCAicmVmcmVzaF90b2tlbiI6ICJyYW5kb20tMTcyNzk2OTQzOS44Nzc1OTk1IiwgInNjb3BlIjogIm9wZW5pZCBwcm9maWxlIGVtYWlsIG9mZmxpbmUiLCAiZXhwaXJlc19pbiI6IDMsICJ0b2tlbl90eXBlIjogIkJlYXJlciIsICJleHBpcmVzX2F0IjogM30='} -headers - {'host': 'localhost', 'Cookie': 'cxguser=eyJhY2Nlc3NfdG9rZW4iOiAib3duZXIiLCAicmVmcmVzaF90b2tlbiI6ICJyYW5kb20tMTcyNzk2OTQzOS44ODM0ODciLCAic2NvcGUiOiAib3BlbmlkIHByb2ZpbGUgZW1haWwgb2ZmbGluZSIsICJleHBpcmVzX2luIjogMywgInRva2VuX3R5cGUiOiAiQmVhcmVyIiwgImV4cGlyZXNfYXQiOiAzfQ=='} -headers - {'host': 'localhost', 'Cookie': 'cxguser=eyJhY2Nlc3NfdG9rZW4iOiAib3duZXIiLCAicmVmcmVzaF90b2tlbiI6ICJyYW5kb20tMTcyNzk2OTQzOS44ODU4Mjc4IiwgInNjb3BlIjogIm9wZW5pZCBwcm9maWxlIGVtYWlsIG9mZmxpbmUiLCAiZXhwaXJlc19pbiI6IDMsICJ0b2tlbl90eXBlIjogIkJlYXJlciIsICJleHBpcmVzX2F0IjogM30='} -headers - {'host': 'localhost', 'Cookie': 'cxguser=eyJhY2Nlc3NfdG9rZW4iOiAib3duZXIiLCAicmVmcmVzaF90b2tlbiI6ICJyYW5kb20tMTcyNzk2OTQzOS44OTA3NzE0IiwgInNjb3BlIjogIm9wZW5pZCBwcm9maWxlIGVtYWlsIG9mZmxpbmUiLCAiZXhwaXJlc19pbiI6IDMsICJ0b2tlbl90eXBlIjogIkJlYXJlciIsICJleHBpcmVzX2F0IjogM30='} -headers - {'host': 'localhost'} -headers - {'host': 'localhost'} -headers - {'host': 'localhost'} -headers - {'host': 'localhost'} diff --git a/22178/data/attachments/d584a1d5e948a1da.txt b/22178/data/attachments/d584a1d5e948a1da.txt deleted file mode 100644 index e9da0e0ccae2..000000000000 --- a/22178/data/attachments/d584a1d5e948a1da.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "7a2ee20e-429e-4826-b89e-5c31d869bdf2", "type": "REQUEST", "details": {"url": "/dp/v1/collections", "method": "OPTIONS", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "7a2ee20e-429e-4826-b89e-5c31d869bdf2", "type": "RESPONSE", "details": {"status_code": 200, "content_length": null, "response_time": 0.00028443336486816406}} diff --git a/22178/data/attachments/d5d37294492b96b7.txt b/22178/data/attachments/d5d37294492b96b7.txt deleted file mode 100644 index 4ef19e6f9f9c..000000000000 --- a/22178/data/attachments/d5d37294492b96b7.txt +++ /dev/null @@ -1,302 +0,0 @@ -INFO root:app.py:22 {'dataset_version_id': '123', 'collection_version_id': '456', 'error': {}, 'execution_id': 'arn:aws:states:us-west-2:migrate_123456789012:execution:MyStateMachine'} -INFO root:app.py:33 Skipping slack notification for arn:aws:states:us-west-2:migrate_123456789012:execution:MyStateMachine because failure is related to a schema migration -ERROR processing:logger.py:41 Failed to update dataset processing status -Traceback (most recent call last): - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 199, in _new_conn - sock = connection.create_connection( - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py", line 60, in create_connection - for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM): - File "/usr/lib/python3.10/socket.py", line 967, in getaddrinfo - for res in _socket.getaddrinfo(host, port, family, type, proto, flags): -socket.gaierror: [Errno -3] Temporary failure in name resolution - -The above exception was the direct cause of the following exception: - -Traceback (most recent call last): - File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 464, in send - urllib_response = conn.urlopen( - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 843, in urlopen - retries = retries.increment( - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py", line 449, in increment - raise reraise(type(error), error, _stacktrace) - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py", line 39, in reraise - raise value - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 789, in urlopen - response = self._make_request( - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 495, in _make_request - conn.request( - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 96, in request - rval = super().request(method, url, body, headers, *args, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 441, in request - self.endheaders() - File "/usr/lib/python3.10/http/client.py", line 1278, in endheaders - self._send_output(message_body, encode_chunked=encode_chunked) - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 123, in _send_output - self.send(msg) - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 223, in send - return super().send(str) - File "/usr/lib/python3.10/http/client.py", line 976, in send - self.connect() - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 279, in connect - self.sock = self._new_conn() - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 206, in _new_conn - raise NameResolutionError(self.host, self, e) from e -urllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution) - -During handling of the above exception, another exception occurred: - -Traceback (most recent call last): - File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 87, in update_dataset_processing_status_to_failed - get_business_logic().update_dataset_version_status( - File "/single-cell-data-portal/backend/portal/api/providers.py", line 18, in get_business_logic - DatabaseProvider(), - File "/single-cell-data-portal/backend/layers/persistence/persistence.py", line 57, in __init__ - database_uri = CorporaDbConfig().database_uri - File "/single-cell-data-portal/backend/common/utils/secret_config.py", line 54, in __getattr__ - self.load() - File "/single-cell-data-portal/backend/common/utils/secret_config.py", line 88, in load - self.load_from_aws() - File "/single-cell-data-portal/backend/common/utils/secret_config.py", line 99, in load_from_aws - secret = AwsSecret(secret_path) - File "/single-cell-data-portal/backend/common/utils/aws.py", line 31, in __init__ - self._load() - File "/single-cell-data-portal/backend/common/utils/aws.py", line 76, in _load - response = self.secrets_mgr.describe_secret(SecretId=self.name) - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 569, in _api_call - return self._make_api_call(operation_name, kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1005, in _make_api_call - http, parsed_response = self._make_request( - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1029, in _make_request - return self._endpoint.make_request(operation_model, request_dict) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 119, in make_request - return self._send_request(request_dict, operation_model) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 200, in _send_request - while self._needs_retry( - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 360, in _needs_retry - responses = self._event_emitter.emit( - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 412, in emit - return self._emitter.emit(aliased_event_name, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 256, in emit - return self._emit(event_name, kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 239, in _emit - response = handler(**kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 207, in __call__ - if self._checker(**checker_kwargs): - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 284, in __call__ - should_retry = self._should_retry( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 320, in _should_retry - return self._checker(attempt_number, response, caught_exception) - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 363, in __call__ - checker_response = checker( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 247, in __call__ - return self._check_caught_exception( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 416, in _check_caught_exception - raise caught_exception - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 279, in _do_get_response - http_response = self._send(request) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 383, in _send - return self.http_session.send(request) - File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 493, in send - raise EndpointConnectionError(endpoint_url=request.url, error=e) -botocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: "http://localstack:4566/" -ERROR processing:logger.py:41 Failed to clean up artifacts. -Traceback (most recent call last): - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 199, in _new_conn - sock = connection.create_connection( - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py", line 60, in create_connection - for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM): - File "/usr/lib/python3.10/socket.py", line 967, in getaddrinfo - for res in _socket.getaddrinfo(host, port, family, type, proto, flags): -socket.gaierror: [Errno -3] Temporary failure in name resolution - -The above exception was the direct cause of the following exception: - -Traceback (most recent call last): - File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 464, in send - urllib_response = conn.urlopen( - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 843, in urlopen - retries = retries.increment( - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py", line 449, in increment - raise reraise(type(error), error, _stacktrace) - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py", line 39, in reraise - raise value - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 789, in urlopen - response = self._make_request( - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 495, in _make_request - conn.request( - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 96, in request - rval = super().request(method, url, body, headers, *args, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 441, in request - self.endheaders() - File "/usr/lib/python3.10/http/client.py", line 1278, in endheaders - self._send_output(message_body, encode_chunked=encode_chunked) - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 123, in _send_output - self.send(msg) - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 223, in send - return super().send(str) - File "/usr/lib/python3.10/http/client.py", line 976, in send - self.connect() - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 279, in connect - self.sock = self._new_conn() - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 206, in _new_conn - raise NameResolutionError(self.host, self, e) from e -urllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution) - -During handling of the above exception, another exception occurred: - -Traceback (most recent call last): - File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 192, in cleanup_artifacts - delete_many_from_s3(artifact_bucket, object_key + "/") - File "/single-cell-data-portal/backend/common/utils/aws.py", line 107, in delete_many_from_s3 - bucket.objects.filter(Prefix=f"{prefix}").delete() - File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 555, in batch_action - return action(self, *args, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py", line 134, in __call__ - for page in parent.pages(): - File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 169, in pages - for page in pages: - File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 269, in __iter__ - response = self._make_request(current_kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 357, in _make_request - return self._method(**current_kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 569, in _api_call - return self._make_api_call(operation_name, kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1005, in _make_api_call - http, parsed_response = self._make_request( - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1029, in _make_request - return self._endpoint.make_request(operation_model, request_dict) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 119, in make_request - return self._send_request(request_dict, operation_model) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 200, in _send_request - while self._needs_retry( - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 360, in _needs_retry - responses = self._event_emitter.emit( - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 412, in emit - return self._emitter.emit(aliased_event_name, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 256, in emit - return self._emit(event_name, kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 239, in _emit - response = handler(**kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 207, in __call__ - if self._checker(**checker_kwargs): - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 284, in __call__ - should_retry = self._should_retry( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 320, in _should_retry - return self._checker(attempt_number, response, caught_exception) - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 363, in __call__ - checker_response = checker( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 247, in __call__ - return self._check_caught_exception( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 416, in _check_caught_exception - raise caught_exception - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 279, in _do_get_response - http_response = self._send(request) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 383, in _send - return self.http_session.send(request) - File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 493, in send - raise EndpointConnectionError(endpoint_url=request.url, error=e) -botocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: "http://localstack:4566/artifact-bucket?prefix=123%2F&encoding-type=url" -ERROR processing:logger.py:41 Failed to clean up datasets. -Traceback (most recent call last): - File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 194, in cleanup_artifacts - datasets_bucket = os.environ["DATASETS_BUCKET"] - File "/usr/lib/python3.10/os.py", line 680, in __getitem__ - raise KeyError(key) from None -KeyError: 'DATASETS_BUCKET' -ERROR processing:logger.py:41 Failed to clean up cxgs. -Traceback (most recent call last): - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 199, in _new_conn - sock = connection.create_connection( - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py", line 60, in create_connection - for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM): - File "/usr/lib/python3.10/socket.py", line 967, in getaddrinfo - for res in _socket.getaddrinfo(host, port, family, type, proto, flags): -socket.gaierror: [Errno -3] Temporary failure in name resolution - -The above exception was the direct cause of the following exception: - -Traceback (most recent call last): - File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 464, in send - urllib_response = conn.urlopen( - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 843, in urlopen - retries = retries.increment( - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py", line 449, in increment - raise reraise(type(error), error, _stacktrace) - File "/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py", line 39, in reraise - raise value - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 789, in urlopen - response = self._make_request( - File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 495, in _make_request - conn.request( - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 96, in request - rval = super().request(method, url, body, headers, *args, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 441, in request - self.endheaders() - File "/usr/lib/python3.10/http/client.py", line 1278, in endheaders - self._send_output(message_body, encode_chunked=encode_chunked) - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 123, in _send_output - self.send(msg) - File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 223, in send - return super().send(str) - File "/usr/lib/python3.10/http/client.py", line 976, in send - self.connect() - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 279, in connect - self.sock = self._new_conn() - File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 206, in _new_conn - raise NameResolutionError(self.host, self, e) from e -urllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution) - -During handling of the above exception, another exception occurred: - -Traceback (most recent call last): - File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 198, in cleanup_artifacts - delete_many_from_s3(cellxgene_bucket, object_key + ".cxg/") - File "/single-cell-data-portal/backend/common/utils/aws.py", line 107, in delete_many_from_s3 - bucket.objects.filter(Prefix=f"{prefix}").delete() - File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 555, in batch_action - return action(self, *args, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py", line 134, in __call__ - for page in parent.pages(): - File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 169, in pages - for page in pages: - File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 269, in __iter__ - response = self._make_request(current_kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 357, in _make_request - return self._method(**current_kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 569, in _api_call - return self._make_api_call(operation_name, kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1005, in _make_api_call - http, parsed_response = self._make_request( - File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1029, in _make_request - return self._endpoint.make_request(operation_model, request_dict) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 119, in make_request - return self._send_request(request_dict, operation_model) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 200, in _send_request - while self._needs_retry( - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 360, in _needs_retry - responses = self._event_emitter.emit( - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 412, in emit - return self._emitter.emit(aliased_event_name, **kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 256, in emit - return self._emit(event_name, kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 239, in _emit - response = handler(**kwargs) - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 207, in __call__ - if self._checker(**checker_kwargs): - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 284, in __call__ - should_retry = self._should_retry( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 320, in _should_retry - return self._checker(attempt_number, response, caught_exception) - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 363, in __call__ - checker_response = checker( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 247, in __call__ - return self._check_caught_exception( - File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 416, in _check_caught_exception - raise caught_exception - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 279, in _do_get_response - http_response = self._send(request) - File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 383, in _send - return self.http_session.send(request) - File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 493, in send - raise EndpointConnectionError(endpoint_url=request.url, error=e) -botocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: "http://localstack:4566/cellxgene-bucket?prefix=123.cxg%2F&encoding-type=url" \ No newline at end of file diff --git a/22178/data/attachments/d6c50b8ebb9cff53.txt b/22178/data/attachments/d6c50b8ebb9cff53.txt deleted file mode 100644 index bdd5f454b4a4..000000000000 --- a/22178/data/attachments/d6c50b8ebb9cff53.txt +++ /dev/null @@ -1,7 +0,0 @@ -DEBUG ddtrace.internal.remoteconfig.worker:worker.py:53 Agent is down or Remote Config is not enabled in the Agent -Check your Agent version, you need an Agent running on 7.39.1 version or above. -Check Your Remote Config environment variables on your Agent: -DD_REMOTE_CONFIGURATION_ENABLED=true -See: https://docs.datadoghq.com/agent/guide/how_remote_config_works/ -DEBUG ddtrace.internal.remoteconfig._subscribers:_subscribers.py:45 [PID 1 | PPID 0] Subscriber ASM is getting data -DEBUG ddtrace.internal.remoteconfig._subscribers:_subscribers.py:47 [PID 1 | PPID 0] Subscriber ASM got data \ No newline at end of file diff --git a/22178/data/attachments/d6fe5ce0a817b2b6.txt b/22178/data/attachments/d6fe5ce0a817b2b6.txt deleted file mode 100644 index a0cb2fa39def..000000000000 --- a/22178/data/attachments/d6fe5ce0a817b2b6.txt +++ /dev/null @@ -1,3 +0,0 @@ -INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 9cc0ce2f-15c1-45aa-9a75-0a8fc9a4f188, 'url': 'http://fake.url', 'current_dataset_version_id': None} -INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 9cc0ce2f-15c1-45aa-9a75-0a8fc9a4f188, 'url': None, 'current_dataset_version_id': aa82af02-a8e1-4396-8e75-fbf725ca5d03} -ERROR processing:dataset_metadata_update.py:317 Cannot find raw H5AD artifact uri for aa82af02-a8e1-4396-8e75-fbf725ca5d03. \ No newline at end of file diff --git a/22178/data/attachments/d70fc0c781e312d6.txt b/22178/data/attachments/d70fc0c781e312d6.txt deleted file mode 100644 index b5c2061f25da..000000000000 --- a/22178/data/attachments/d70fc0c781e312d6.txt +++ /dev/null @@ -1,3 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "5f929f94-6af5-46e4-9bc9-443c0dca4226", "type": "REQUEST", "details": {"url": "/curation/v1/collections", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "root", "message": "", "lineno": 42, "pathname": "/single-cell-data-portal/backend/curation/api/v1/curation/collections/actions.py", "request_id": "5f929f94-6af5-46e4-9bc9-443c0dca4226", "is_published": true} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:36.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "5f929f94-6af5-46e4-9bc9-443c0dca4226", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 1627, "response_time": 0.003528118133544922}} diff --git a/22178/data/attachments/d7856d24d9593add.txt b/22178/data/attachments/d7856d24d9593add.txt deleted file mode 100644 index 051749b2cd47..000000000000 --- a/22178/data/attachments/d7856d24d9593add.txt +++ /dev/null @@ -1 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:34:04.003Z", "name": "processing", "message": "Estimated resource requirements", "lineno": 120, "pathname": "/single-cell-data-portal/backend/layers/processing/process_download.py", "memory_modifier": 1, "swap_modifier": 5, "min_vcpu": 1, "max_vcpu": 16, "max_swap_memory_MB": 300000, "memory_per_vcpu": 4000, "uncompressed_size_MB": 65536.0, "max_swap": 300000, "memory": 64000, "vcpus": 16} diff --git a/22178/data/attachments/d7e1c7d78fbc314.txt b/22178/data/attachments/d7e1c7d78fbc314.txt deleted file mode 100644 index 9f5aafe5a01b..000000000000 --- a/22178/data/attachments/d7e1c7d78fbc314.txt +++ /dev/null @@ -1 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:34:04.003Z", "name": "processing", "message": "Estimated resource requirements", "lineno": 120, "pathname": "/single-cell-data-portal/backend/layers/processing/process_download.py", "memory_modifier": 1, "swap_modifier": 5, "min_vcpu": 1, "max_vcpu": 16, "max_swap_memory_MB": 300000, "memory_per_vcpu": 4000, "uncompressed_size_MB": 2048.0, "max_swap": 20000, "memory": 4000, "vcpus": 1} diff --git a/22178/data/attachments/d80f84b28fa3d79f.txt b/22178/data/attachments/d80f84b28fa3d79f.txt deleted file mode 100644 index bb2dbe42a5c3..000000000000 --- a/22178/data/attachments/d80f84b28fa3d79f.txt +++ /dev/null @@ -1,4 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "af9ca10a-5103-431d-b6d8-cef075975a44", "type": "REQUEST", "details": {"url": "/curation/v1/collection_versions/9f0acb81-4eea-46bf-8ca6-be456f1f55e8", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "af9ca10a-5103-431d-b6d8-cef075975a44", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 3556, "response_time": 0.006070137023925781}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "d7007903-797e-4c3c-962b-22a9beb93800", "type": "REQUEST", "details": {"url": "/curation/v1/collection_versions/077ef8e4-d1d4-4b09-98c3-71cf141441de", "method": "GET", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:37.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "d7007903-797e-4c3c-962b-22a9beb93800", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 3556, "response_time": 0.005619049072265625}} diff --git a/22178/data/attachments/d850c75a95a36a83.txt b/22178/data/attachments/d850c75a95a36a83.txt deleted file mode 100644 index 680249affe06..000000000000 --- a/22178/data/attachments/d850c75a95a36a83.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "40973020-332b-4d32-bc77-3be76e834651", "type": "REQUEST", "details": {"url": "/dp/v1/collections/3c89aa05-66d0-41ae-96fd-fa2f5610cde3/datasets/cbbd480d-5148-4d1b-87c2-3925d72ffea9", "method": "PATCH", "content_length": 22}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "40973020-332b-4d32-bc77-3be76e834651", "type": "RESPONSE", "details": {"status_code": 405, "content_length": 149, "response_time": 0.004591703414916992}} diff --git a/22178/data/attachments/d857fcc2809070a8.txt b/22178/data/attachments/d857fcc2809070a8.txt deleted file mode 100644 index 77ac93bc6b94..000000000000 --- a/22178/data/attachments/d857fcc2809070a8.txt +++ /dev/null @@ -1 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:33:16.003Z", "name": "backend.layers.business.business", "message": "ingesting dataset", "lineno": 553, "pathname": "/single-cell-data-portal/backend/layers/business/business.py", "collection_version_id": "de820b4a-4cb7-4284-8ee5-f858a5210dba", "url": "http://fake.url", "current_dataset_version_id": null} diff --git a/22178/data/attachments/d87ce013a5390715.txt b/22178/data/attachments/d87ce013a5390715.txt deleted file mode 100644 index b59ac84d7415..000000000000 --- a/22178/data/attachments/d87ce013a5390715.txt +++ /dev/null @@ -1 +0,0 @@ -{"levelname": "ERROR", "asctime": "2024-10-03T15:34:03.003Z", "name": "root", "message": "Dataset version ID dataset123 not found", "lineno": 107, "pathname": "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py"} diff --git a/22178/data/attachments/d8de9314a8565aea.txt b/22178/data/attachments/d8de9314a8565aea.txt deleted file mode 100644 index 33702a8c5f65..000000000000 --- a/22178/data/attachments/d8de9314a8565aea.txt +++ /dev/null @@ -1,11 +0,0 @@ -INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 68ec32ad-82bc-4404-aea9-8ae4f4e0fee2, 'url': 'http://fake.url', 'current_dataset_version_id': None} -INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 68ec32ad-82bc-4404-aea9-8ae4f4e0fee2, 'url': None, 'current_dataset_version_id': 794fd081-8b36-4d04-8322-33e14dcc4cd4} -INFO processing:logger.py:26 Start create_artifact -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:91 Uploaded [ff4397f7-ca9a-4d20-b105-6b613a2f9330/local.h5ad] to s3://artifact_bucket/ff4397f7-ca9a-4d20-b105-6b613a2f9330/local.h5ad -INFO processing:process_logic.py:93 Updated database with h5ad. -INFO processing:process_logic.py:100 Uploaded ff4397f7-ca9a-4d20-b105-6b613a2f9330.h5ad to s3://datasets_bucket/ff4397f7-ca9a-4d20-b105-6b613a2f9330/ff4397f7-ca9a-4d20-b105-6b613a2f9330.h5ad -INFO processing:process_logic.py:45 Updating processing status -INFO processing:logger.py:28 Complete create_artifact -INFO processing:process_logic.py:45 Updating processing status -INFO processing:process_logic.py:45 Updating processing status \ No newline at end of file diff --git a/22178/data/attachments/d920462acd362e13.txt b/22178/data/attachments/d920462acd362e13.txt deleted file mode 100644 index 36c35bc364f0..000000000000 --- a/22178/data/attachments/d920462acd362e13.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:39.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "0585579b-f594-4acf-b57c-22de2865e432", "type": "REQUEST", "details": {"url": "/curation/v1/collections/7c97737b-7704-486a-8b8f-030cbd79f061/datasets", "method": "POST", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:39.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "0585579b-f594-4acf-b57c-22de2865e432", "type": "RESPONSE", "details": {"status_code": 201, "content_length": 59, "response_time": 0.0013842582702636719}} diff --git a/22178/data/attachments/d9850862b1c4345a.txt b/22178/data/attachments/d9850862b1c4345a.txt deleted file mode 100644 index de90f82412e2..000000000000 --- a/22178/data/attachments/d9850862b1c4345a.txt +++ /dev/null @@ -1,4 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "c11b9377-b378-4d9b-88c4-dab49b53a2ae", "type": "REQUEST", "details": {"url": "/dp/v1/datasets/fa9c96d4-412d-4025-8d4d-3b7529d040cc", "method": "DELETE", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "c11b9377-b378-4d9b-88c4-dab49b53a2ae", "type": "RESPONSE", "details": 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a/22178/data/attachments/fe09a927e13d23c.txt +++ /dev/null @@ -1 +0,0 @@ -INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 80efdd5c-d6ff-4df6-8a92-c3aa01d95324, 'url': 'http://fake.url', 'current_dataset_version_id': None} \ No newline at end of file diff --git a/22178/data/attachments/fe5f9097a2d554e0.txt b/22178/data/attachments/fe5f9097a2d554e0.txt deleted file mode 100644 index 6f7d0f72c17d..000000000000 --- a/22178/data/attachments/fe5f9097a2d554e0.txt +++ /dev/null @@ -1,2 +0,0 @@ -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "a0ee69df-2099-4083-9f30-eda3574655fa", "type": "REQUEST", "details": {"url": "/dp/v1/collections", "method": "OPTIONS", "content_length": null}} -{"levelname": "INFO", "asctime": "2024-10-03T15:30:40.003Z", "name": "corpora-api-test", 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18, 19, 20, 21,\n 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32,\n 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43,\n 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54,\n 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,\n 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76,\n 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87,\n 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,\n 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109,\n 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120,\n 121, 122, 123, 124, 125, 126, 127, -128, -127, -126, -125,\n -124, -123, -122, -121, -120, -119, -118, -117, -116, -115, -114,\n -113, -112, -111, -110, -109, -108, -107, -106, -105, -104, -103,\n -102, -101, -100, -99, -98, -97, -96, -95, -94, -93, -92,\n -91, -90, -89, -88, -87, -86, -85, -84, -83, -82, -81,\n -80, -79, -78, -77, -76, -75, -74, -73, -72, -71, -70,\n -69, -68, -67, -66, -65, -64, -63, -62, -61, -60, -59,\n -58, -57, -56, -55, -54, -53, -52, -51, -50, -49, -48,\n -47, -46, -45, -44, -43, -42, -41, -40, -39, -38, -37,\n -36, 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-81, -80, -79, -78, -77, -76, -75, -74, -73,\n -72, -71, -70, -69, -68, -67, -66, -65, -64, -63, -62,\n -61, -60, -59, -58, -57, -56, -55, -54, -53, -52, -51,\n -50, -49, -48, -47, -46, -45, -44, -43, -42, -41, -40,\n -39, -38, -37, -36, -35, -34, -33, -32, -31, -30, -29,\n -28, -27, -26, -25, -24, -23, -22, -21, -20, -19, -18,\n -17, -16, -15, -14, -13, -12, -11, -10, -9, -8, -7,\n -6, -5, -4, -3, -2, -1, 0, 1, 2, 3, 4,\n 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,\n 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26,\n 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37,\n 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48,\n 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59,\n 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70,\n 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,\n 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92,\n 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,\n 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125,\n 126, 127, -128, -127, -126, -125, -124, -123, -122, -121, -120,\n -119, -118, -117, -116, -115, -114, -113, -112, -111, -110, -109,\n -108, -107, -106, -105, -104, -103, -102, -101, -100, -99, -98,\n -97, -96, -95, -94, -93, -92, -91, -90, -89, -88, -87,\n -86, -85, -84, -83, -82, -81, -80, -79, -78, -77, -76,\n -75, -74, -73, -72, -71, -70, -69, -68, -67, -66, -65,\n -64, -63, -62, -61, -60, -59, -58, -57, -56, -55, -54,\n -53, -52, -51, -50, -49, -48, -47, -46, -45, -44, -43,\n -42, -41, -40, -39, -38, -37, -36, -35, -34, -33, -32,\n -31, -30, -29, -28, -27, -26, -25, -24, -23, -22, -21,\n -20, -19, -18, -17, -16, -15, -14, -13, -12, -11, -10,\n -9, -8, -7, -6, -5, -4, -3, -2, -1, 0, 1,\n 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23,\n 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34,\n 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45,\n 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56,\n 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67,\n 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,\n 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89,\n 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100,\n 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111,\n 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122,\n 123, 124, 125, 126, 127, -128, -127, -126, -125, -124, -123,\n -122, -121, -120, -119, -118, -117, -116, -115, -114, -113, -112,\n -111, -110, -109, -108, -107, -106, -105, -104, -103, -102, -101,\n -100, -99, -98, -97, -96, -95, -94, -93, -92, -91, -90,\n -89, -88, -87, -86, -85, -84, -83, -82, -81, -80, -79,\n -78, -77, -76, -75, -74, -73, -72, -71, -70, -69, -68,\n -67, -66, -65, -64, -63, -62, -61, -60, -59, -58, -57,\n -56, -55, -54, -53, -52, -51, -50, -49, -48, -47, -46,\n -45, -44, -43, -42, -41, -40, -39, -38, -37, -36, -35,\n -34, -33, -32, -31, -30, -29, -28, -27, -26, -25],\n dtype=int8), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters3]","uid":"7fdcbba169603962","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647777,"stop":1727969647777,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ..\n995 -29\n996 -28\n997 -27\n998 -26\n999 -25\nLength: 1000, dtype: int8, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters4]","uid":"75952b49e1f0eaa8","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647781,"stop":1727969647781,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n -34, -33, -32, -31, -30, -29, -28, -27, -26, -25],\n dtype='int8', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters5]","uid":"57b3fb83c2b62e91","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647784,"stop":1727969647785,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters6]","uid":"df49325e4d58fbca","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647790,"stop":1727969647790,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 0, 1, 2, 3,\n 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16,\n 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29,\n 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42,\n 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55,\n 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68,\n 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,\n 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94,\n 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107,\n 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120,\n 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133,\n 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146,\n 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159,\n 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172,\n 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185,\n 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198,\n 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211,\n 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224,\n 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237,\n 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250,\n 251, 252, 253, 254, 255, 0, 1, 2, 3, 4, 5, 6, 7,\n 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20,\n 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,\n 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,\n 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59,\n 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72,\n 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85,\n 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,\n 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111,\n 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124,\n 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137,\n 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150,\n 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163,\n 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176,\n 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189,\n 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202,\n 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215,\n 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228,\n 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241,\n 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254,\n 255, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11,\n 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,\n 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37,\n 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,\n 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,\n 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76,\n 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89,\n 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102,\n 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115,\n 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128,\n 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141,\n 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154,\n 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167,\n 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180,\n 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193,\n 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206,\n 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219,\n 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231],\n dtype=uint8), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters7]","uid":"c19ddb2cdcf5d7f2","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647796,"stop":1727969647796,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 227\n996 228\n997 229\n998 230\n999 231\nLength: 1000, dtype: uint8, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters8]","uid":"aa58e98b9049f52a","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647800,"stop":1727969647800,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 222, 223, 224, 225, 226, 227, 228, 229, 230, 231],\n dtype='uint8', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters9]","uid":"58a5e150025a8803","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647803,"stop":1727969647804,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters10]","uid":"2a1d1ab1039f4539","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647809,"stop":1727969647809,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=int16), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters11]","uid":"32e61aac4752f915","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647815,"stop":1727969647815,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int16, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters12]","uid":"745f52a5d5795b19","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647820,"stop":1727969647820,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int16', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters13]","uid":"a7ee68dca9ce6e70","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647823,"stop":1727969647824,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters14]","uid":"c9756ebccb0fc9c7","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647829,"stop":1727969647829,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint16), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters15]","uid":"8977eb4b9032d1d9","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647835,"stop":1727969647835,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: uint16, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters16]","uid":"2b28b15cb9caca8d","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647839,"stop":1727969647839,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='uint16', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters17]","uid":"89753cce7440f0f5","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647842,"stop":1727969647842,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters18]","uid":"478864767f4da2c","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647848,"stop":1727969647848,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=int32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters19]","uid":"232110170408f2fa","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647854,"stop":1727969647854,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int32, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters20]","uid":"4b23dd4d3e0980ab","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647858,"stop":1727969647858,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int32', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters21]","uid":"833f070d9c7ed1f1","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647861,"stop":1727969647861,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters22]","uid":"b2b8705e8c0d5ca8","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647867,"stop":1727969647867,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters23]","uid":"7e16912b5185f68e","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647873,"stop":1727969647873,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: uint32, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters24]","uid":"569c75c6467c62ff","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647877,"stop":1727969647878,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='uint32', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters25]","uid":"fdf8ba80b396329c","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647881,"stop":1727969647881,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters26]","uid":"a606cb1992dc0d8c","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647886,"stop":1727969647887,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999]), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters27]","uid":"4fc71cc8fec57ac0","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647892,"stop":1727969647893,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int64, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters28]","uid":"18d8b796d4971c36","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647896,"stop":1727969647897,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int64', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters29]","uid":"d7d84936b8695b59","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647900,"stop":1727969647900,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters30]","uid":"3668587761f134b7","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647906,"stop":1727969647906,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint64), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 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-124.0, -123.0, -122.0, -121.0,\n -120.0,\n ...\n 990.0, 991.0, 992.0, 993.0, 994.0, 995.0, 996.0, 997.0, 998.0,\n 999.0],\n dtype='float32', length=1129), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': None}"],"tags":[]},{"name":"test_type_inference[parameters37]","uid":"b0835345249c3f0c","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1727969647936,"stop":1727969647936,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ nan, -inf, -1., -0., 0., 0., 1., inf, nan],\n dtype=float32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': 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18, 19, 20, 21,\n 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32,\n 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43,\n 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54,\n 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,\n 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76,\n 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87,\n 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,\n 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109,\n 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120,\n 121, 122, 123, 124, 125, 126, 127, -128, -127, -126, -125,\n -124, -123, -122, -121, -120, -119, -118, -117, -116, -115, -114,\n -113, -112, -111, -110, -109, -108, -107, -106, -105, -104, -103,\n -102, -101, -100, -99, -98, -97, -96, -95, -94, -93, -92,\n -91, -90, -89, -88, -87, -86, -85, -84, -83, -82, -81,\n -80, -79, -78, -77, -76, -75, -74, -73, -72, -71, -70,\n -69, -68, -67, -66, -65, -64, -63, -62, -61, -60, -59,\n -58, -57, -56, -55, -54, -53, -52, -51, -50, -49, -48,\n -47, -46, -45, -44, -43, -42, -41, -40, -39, -38, -37,\n -36, 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-81, -80, -79, -78, -77, -76, -75, -74, -73,\n -72, -71, -70, -69, -68, -67, -66, -65, -64, -63, -62,\n -61, -60, -59, -58, -57, -56, -55, -54, -53, -52, -51,\n -50, -49, -48, -47, -46, -45, -44, -43, -42, -41, -40,\n -39, -38, -37, -36, -35, -34, -33, -32, -31, -30, -29,\n -28, -27, -26, -25, -24, -23, -22, -21, -20, -19, -18,\n -17, -16, -15, -14, -13, -12, -11, -10, -9, -8, -7,\n -6, -5, -4, -3, -2, -1, 0, 1, 2, 3, 4,\n 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,\n 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26,\n 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37,\n 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48,\n 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59,\n 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70,\n 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,\n 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92,\n 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,\n 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125,\n 126, 127, -128, -127, -126, -125, -124, -123, -122, -121, -120,\n -119, -118, -117, -116, -115, -114, -113, -112, -111, -110, -109,\n -108, -107, -106, -105, -104, -103, -102, -101, -100, -99, -98,\n -97, -96, -95, -94, -93, -92, -91, -90, -89, -88, -87,\n -86, -85, -84, -83, -82, -81, -80, -79, -78, -77, -76,\n -75, -74, -73, -72, -71, -70, -69, -68, -67, -66, -65,\n -64, -63, -62, -61, -60, -59, -58, -57, -56, -55, -54,\n -53, -52, -51, -50, -49, -48, -47, -46, -45, -44, -43,\n -42, -41, -40, -39, -38, -37, -36, -35, -34, -33, -32,\n -31, -30, -29, -28, -27, -26, -25, -24, -23, -22, -21,\n -20, -19, -18, -17, -16, -15, -14, -13, -12, -11, -10,\n -9, -8, -7, -6, -5, -4, -3, -2, -1, 0, 1,\n 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23,\n 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34,\n 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45,\n 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56,\n 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67,\n 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,\n 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89,\n 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100,\n 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111,\n 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122,\n 123, 124, 125, 126, 127, -128, -127, -126, -125, -124, -123,\n -122, -121, -120, -119, -118, -117, -116, -115, -114, -113, -112,\n -111, -110, -109, -108, -107, -106, -105, -104, -103, -102, -101,\n -100, -99, -98, -97, -96, -95, -94, -93, -92, -91, -90,\n -89, -88, -87, -86, -85, -84, -83, -82, -81, -80, -79,\n -78, -77, -76, -75, -74, -73, -72, -71, -70, -69, -68,\n -67, -66, -65, -64, -63, -62, -61, -60, -59, -58, -57,\n -56, -55, -54, -53, -52, -51, -50, -49, -48, -47, -46,\n -45, -44, -43, -42, -41, -40, -39, -38, -37, -36, -35,\n -34, -33, -32, -31, -30, -29, -28, -27, -26, -25],\n dtype=int8), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters3]","uid":"7fdcbba169603962","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647777,"stop":1727969647777,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ..\n995 -29\n996 -28\n997 -27\n998 -26\n999 -25\nLength: 1000, dtype: int8, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters4]","uid":"75952b49e1f0eaa8","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647781,"stop":1727969647781,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n -34, -33, -32, -31, -30, -29, -28, -27, -26, -25],\n dtype='int8', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters5]","uid":"57b3fb83c2b62e91","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647784,"stop":1727969647785,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters6]","uid":"df49325e4d58fbca","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647790,"stop":1727969647790,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 0, 1, 2, 3,\n 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16,\n 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29,\n 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42,\n 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55,\n 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68,\n 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,\n 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94,\n 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107,\n 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120,\n 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133,\n 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146,\n 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159,\n 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172,\n 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185,\n 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198,\n 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211,\n 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224,\n 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237,\n 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250,\n 251, 252, 253, 254, 255, 0, 1, 2, 3, 4, 5, 6, 7,\n 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20,\n 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,\n 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,\n 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59,\n 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72,\n 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85,\n 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,\n 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111,\n 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124,\n 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137,\n 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150,\n 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163,\n 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176,\n 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189,\n 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202,\n 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215,\n 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228,\n 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241,\n 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254,\n 255, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11,\n 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,\n 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37,\n 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,\n 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,\n 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76,\n 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89,\n 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102,\n 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115,\n 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128,\n 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141,\n 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154,\n 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167,\n 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180,\n 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193,\n 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206,\n 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219,\n 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231],\n dtype=uint8), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters7]","uid":"c19ddb2cdcf5d7f2","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647796,"stop":1727969647796,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 227\n996 228\n997 229\n998 230\n999 231\nLength: 1000, dtype: uint8, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters8]","uid":"aa58e98b9049f52a","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647800,"stop":1727969647800,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 222, 223, 224, 225, 226, 227, 228, 229, 230, 231],\n dtype='uint8', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters9]","uid":"58a5e150025a8803","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647803,"stop":1727969647804,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters10]","uid":"2a1d1ab1039f4539","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647809,"stop":1727969647809,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=int16), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters11]","uid":"32e61aac4752f915","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647815,"stop":1727969647815,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int16, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters12]","uid":"745f52a5d5795b19","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647820,"stop":1727969647820,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int16', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters13]","uid":"a7ee68dca9ce6e70","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647823,"stop":1727969647824,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters14]","uid":"c9756ebccb0fc9c7","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647829,"stop":1727969647829,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint16), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters15]","uid":"8977eb4b9032d1d9","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647835,"stop":1727969647835,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: uint16, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters16]","uid":"2b28b15cb9caca8d","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647839,"stop":1727969647839,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='uint16', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters17]","uid":"89753cce7440f0f5","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647842,"stop":1727969647842,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters18]","uid":"478864767f4da2c","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647848,"stop":1727969647848,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=int32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters19]","uid":"232110170408f2fa","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647854,"stop":1727969647854,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int32, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters20]","uid":"4b23dd4d3e0980ab","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647858,"stop":1727969647858,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int32', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters21]","uid":"833f070d9c7ed1f1","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647861,"stop":1727969647861,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters22]","uid":"b2b8705e8c0d5ca8","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647867,"stop":1727969647867,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters23]","uid":"7e16912b5185f68e","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647873,"stop":1727969647873,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: uint32, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters24]","uid":"569c75c6467c62ff","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647877,"stop":1727969647878,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='uint32', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters25]","uid":"fdf8ba80b396329c","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647881,"stop":1727969647881,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters26]","uid":"a606cb1992dc0d8c","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647886,"stop":1727969647887,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999]), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters27]","uid":"4fc71cc8fec57ac0","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647892,"stop":1727969647893,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int64, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters28]","uid":"18d8b796d4971c36","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647896,"stop":1727969647897,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int64', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters29]","uid":"d7d84936b8695b59","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647900,"stop":1727969647900,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters30]","uid":"3668587761f134b7","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1727969647906,"stop":1727969647906,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint64), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 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2024","1","tests.unit.processing","test_process_download","","","","test_estimate_resource_requirements_positive[adata3-memory_settings3-expected3]","" -"passed","Thu Oct 03 15:30:45 GMT 2024","Thu Oct 03 15:30:45 GMT 2024","12","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_init_of_unknown_secret_does_not_set_secret_metadata","" -"passed","Thu Oct 03 15:33:24 GMT 2024","Thu Oct 03 15:34:46 GMT 2024","82512","tests.unit.backend.cellguide.pipeline","test_gpt_descriptions","TestGptDescriptionGenerator","","","test__gpt_description_generator","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_replace_dataset_in_unpublished_collection_ok"," - A dataset can be replaced from a collection version by calling `ingest_dataset` - and specifying an existing dataset_version_id - " -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","0","tests.unit.backend.layers.utils","test_semvar_utils","TestSemvarUtils","","","test__release_only_misformatted_version__returns_false","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","1","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_unexpected_ncbi_responses","Correctly identifies a valid search result from NCBI" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","11","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_tombstoned_collection__410","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters36]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters7]","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_private_collection_same_doi_publisher_metadata_not_updated_ok"," - When publishing a private collection - and there is no change in DOI - publisher metadata should not - be updated if the deposited date is before the created at date of the corresponding collection. - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","2","tests.unit.processing","test_type_conversion_utils","TestTypeConversionUtils","","","test__get_dtypes_and_schemas_of_dataframe__dtype_and_schema_returns_as_expected","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[doi-http://somewhere.org/path/?abcd=123]","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_invalid_characters_in_field[text\x1f]","" -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","1","tests.unit.processing","test_extract_metadata","TestProcessingValidate","","","test_get_spatial_metadata__is_single_true_and_fullres_false","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestCollectionPutUploadLink","","","test__reupload_while_processing_dataset__405","cannot reupload a dataset that is pending" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestAuthToken","","","test__post_token__201","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","12","tests.unit.processing","test_rollback","","","","test_rollback_published_collections","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","5","tests.unit.backend.layers.api","test_curation_api","TestPostCollection","","","test__create_collection__InvalidParameters","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","37","tests.unit.backend.layers.business","test_business","TestGetAllCollections","","","test_get_all_collections_unfiltered_ok"," - All the collection versions for all collections should be returned by `get_collections`, including published, - unpublished, and all owners. - " -"passed","Thu Oct 03 15:30:56 GMT 2024","Thu Oct 03 15:30:56 GMT 2024","368","tests.unit.backend.wmg.api.common","test_expression_dotplot","ExpressionDotPlotTest","","","test__query_non_indexed_dim_multi_valued__returns_correct_result","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","7","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__update_private_collection_dataset_invalid_processing_status__405","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","44","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_when_item_is_in_config_but_not_in_env_and_use_env_is_not_set_we_use_config","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollectionsCurators","","","test_update_non_owned_private_collection_as_super_curator__ok","" -"passed","Thu Oct 03 15:30:51 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","2","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_calls_crossref_if_api_key_defined","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","0","tests.unit.backend.layers.utils","test_uri","TestRegisteredSources","","","test_register_pos","" -"passed","Thu Oct 03 15:30:47 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","2058","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_value_of_existing_deleted_secret_raises_exception","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","34","tests.unit.backend.layers.business","test_business","TestGetAllCollections","","","test_get_all_collections_unpublished_ok"," - If published filter flag is False, only unpublished collections should be returned - " -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters78]","" -"passed","Thu Oct 03 15:33:22 GMT 2024","Thu Oct 03 15:33:25 GMT 2024","3452","tests.unit.wmg_processing","test_ontology_labels","OntologyLabelTests","","","test__ontology_term_label","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","3","tests.unit.processing.schema_migration","test_log_errors_and_cleanup","TestLogErrorsAndCleanup","","","test_skip_unprocessed_datasets"," - Test that datasets that do not appear in the processed_datasets variable in log_errors_and_cleanup are skipped - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__Super_Curator","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","4","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_add_dataset_artifact_ok"," - A dataset artifact can be added using `add_dataset_artifact` - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters8]","" -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","61","tests.unit.processing","test_dataset_metadata_update","TestDatasetMetadataUpdaterWorker","","","test_update_rds","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","13","tests.unit.backend.layers.business","test_business","TestSetCollectionVersionDatasetsOrder","","","test_set_collection_version_datasets_order_replace_dataset_ok"," - Replacing a dataset in a collection version does not alter the custom order of the datasets. - " -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","1","tests.unit.processing.schema_migration","test_collection_migrate","TestCollectionMigrate","","","test_no_datasets","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","6","tests.unit.backend.layers.api","test_app","TestAPI","","","test__dp_api_swagger_ui__returns_200","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection_by_version_id__403","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_status_validation_message_ok"," - The dataset validation message can be updated using `update_dataset_status` - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","35","tests.unit.backend.layers.api","test_curation_api","TestDeleteDataset","","","test__delete_published_dataset_cxg_admin"," - cxg_admin role can delete published Datasets during revisions using query_param flag 'delete_published=true' - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","15","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_published_dataset__fail","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[protocol-https://www.google.com]","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters90]","" -"passed","Thu Oct 03 15:30:51 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","3","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__published_doi_used_if_exists_for_preprint","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[raw_data-.com]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_dataset_artifacts_ok"," - Artifacts belonging to a dataset can be obtained with `get_dataset_artifacts` - " -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","15","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_revision_changed_doi_collection_updated_ok"," - When publishing a revision - and there is a change in DOI - collection and artifacts should be updated. - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","8","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_collection_triggers_cloudfront_invalidation","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","18","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_collection_id_retrieves_published_version_by_collection_id_if_revision"," - When there is a revision of a published collection, GET /collections/:collection_id retrieves: - 1. the published version given the canonical collection_id - 2. the revision if given the version_id - " -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","11","tests.unit.processing","test_cxg_generation_utils","TestCxgGenerationUtils","","","test__convert_matrices_to_cxg_arrays__dense_array_writes_successfully","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters42]","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","65","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_all_datasets_200","" -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","2","tests.unit.processing","test_dataset_submissions","TestDatasetSubmissions","","","test__upload_update_by_dataset_id_owner__OK"," - Processing starts when an update of a dataset is uploaded by its ID by the collection owner. - " -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","0","tests.unit.backend.layers.utils","test_semvar_utils","TestSemvarUtils","","","test__release_only_prerelease_properly_formatted_semvar__returns_false","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","11","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_all_datasets_for_index","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","8","tests.unit.backend.layers.api","test_curation_api","TestPostRevision","","","test__post_revision__Not_Owner","" -"passed","Thu Oct 03 15:30:47 GMT 2024","Thu Oct 03 15:30:47 GMT 2024","8","tests.unit.scripts","test_tombstone","TestTombstone","","","test__tombstone_collection","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","1","tests.unit.processing.schema_migration","test_publish_revisions","TestPublishRevisions","","","test_run_pos__do_not_publish_list","Run method when revision is skipped via do_not_publish_list." -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[protocol-google]","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","8","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__list_collection__ok","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","2","tests.unit.processing","test_spatial_assets_utils","","","","test__generate_deep_zoom_assets"," - Test the method to generate deep zoom assets - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:38 GMT 2024","54","tests.unit.backend.layers.api","test_curation_api","TestGetDatasetIdVersions","","","test_get_dataset_id_version_4xx","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_set_dataset_metadata_ok"," - The dataset metadata can be set using `set_dataset_metadata` - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","7","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__can_publish_owned_collection","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","140","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test_get_collection_dynamic_fields","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","7","tests.unit.processing","test_processing","ProcessingTest","","","test_process_seurat_success","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","1","tests.unit.processing.schema_migration","test_publish_revisions","TestPublishRevisions","","","test_check_datasets_no_errors","positive test case for check_datasets method." -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","24","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__create_h5ad_data_file__var_index_name_specified_not_unique_raises_exception","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[lab_website-://]","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters60]","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestDatasetArtifactMetadataUpdates","","","test_generate_dataset_citation","" -"passed","Thu Oct 03 15:30:58 GMT 2024","Thu Oct 03 15:31:04 GMT 2024","5911","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__markers_returns_200_and_correct_response","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","2","tests.unit.processing.schema_migration","test_collection_migrate","TestCollectionMigrate","","","test_migrate_private_collection","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","3","tests.unit.processing.schema_migration","test_collection_migrate","TestCollectionMigrate","","","test_create_migration_revision__published_with_revision","" -"passed","Thu Oct 03 15:30:58 GMT 2024","Thu Oct 03 15:30:58 GMT 2024","19","tests.unit.backend.wmg.api.common","test_rollup","","","","test__rollup[no_compare_dim_all_tissues_have_all_cell_types_except_root_cell_type-input_cell_counts_df5-expected_cell_counts_df5-input_gene_expr_df5-expected_gene_expr_df5]"," - Test that the `rollup` function correctly accumulates (or rolls up) gene-expression - values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths - grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ). - - The input: - - 1. A cell type ontology subgraph consisting of 4 cell types. - - CL:0000127 - ├── CL:0000644 - ├── CL:0002605 - └── CL:0002627 - - 2. A gene expression dataframe consisting of expression numeric values for each - (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. - 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id. - This value is held in a column called `n_cells_tissue`. - 6. A cell counts dataframe that consists of cell counts for each - (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. - 7. We set the `n_cells_tissue` column values to 1000 for all rows - in the gene expression dataframe. - 8. We set all other numeric column values to `1` in the gene expression dataframe. - - The expected output: - - 1. A rolled up gene expression dataframe. - 2. A rolled up cell counts dataframe. - 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe - does not change for all rows because it should not be rolled up the cell type ontology - ancestor paths. - 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`) - in the rolled up gene expression dataframe hold the correct rolled up values. - 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct - rolled up values. - " -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","2","tests.unit.processing.schema_migration","test_collection_migrate","TestCollectionMigrate","","","test_create_migration_revision__private","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","14","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_does_not_change_original_published_at_ok"," - When publishing a collection version, the published_at for the canonical collection - should not change - " -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","42","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_when_item_is_not_in_config_but_is_in_env_and_use_env_is_not_set_we_raise","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","8","tests.unit.backend.layers.api","test_portal_api","TestCollectionUploadLinkCurators","","","test__can_reupload_dataset_as_super_curator"," - A super curator can reupload a dataset to a non-owned collection - " -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","1","tests.unit.backend.layers.utils","test_json","TestCuratorJSONEncoder","","","test_datetime_with_millis","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_artifact_ok"," - A dataset artifact can be updated using `update_dataset_artifact` - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection_new_doi_updates_metadata","" -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","12","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__rds_skipped","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","5","tests.unit.processing","test_spatial_assets_utils","","","","test__process_and_flip_image"," - Test the image processing method - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","3","tests.unit.processing","test_processing","ProcessingTest","","","test_process_cxg_success","" -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","24","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__create_h5ad_data_file__obs_and_var_index_names_specified_doesnt_exist_raises_exception","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","6","tests.unit.backend.layers.api","test_curation_api","TestPutLink","","","test__from_link__no_auth"," - Calling PUT /datasets/:dataset_id should fail with 401 Unauthorized if the user is not authenticated - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_status__403","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","2","tests.unit.processing","test_handle_error","TestCleanupArtifacts","","","test_cleanup_artifacts__elete_many_from_s3_error","Check that delete_many_from_s3 errors are logged but do not raise exceptions." -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test_update_collection_with_empty_required_fields","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","11","tests.unit.backend.layers.api","test_portal_api","TestCollectionPutUploadLink","","","test__reupload_published_dataset_during_revision__202"," - Reupload a published dataset during a revision - " -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","34","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_value_of_unknown_secret_raises_exception","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","12","tests.unit.processing","test_rollback","","","","test__clean_up","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","11","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_create_collection_version_is_auto_version_succeeds"," - Given a canonical collection with a published version and no unpublished versions, - creating an unpublished collection version where is_auto_verison is True will succeed. - " -"passed","Thu Oct 03 15:33:31 GMT 2024","Thu Oct 03 15:33:32 GMT 2024","602","tests.unit.wmg_processing","test_primary_filter_dimensions","PrimaryFilterDimensionsTests","","","test_primary_filter_dimensions","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestS3Credentials","","","test__generate_s3_credentials__Not_Private","" -"passed","Thu Oct 03 15:31:31 GMT 2024","Thu Oct 03 15:31:37 GMT 2024","5865","tests.unit.backend.wmg","test_query","QueryTest","","","test__query_marker_genes_cube__returns_correct_top_10_markers","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","13","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_create_collection_version_multiple_auto_versions_fails"," - Given a canonical collection with a published version and an unpublished version with is_auto_version == True, - creating another unpublished collection version where is_auto_verison is False will fail. - " -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","13","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_get_all_collections_published_does_not_retrieve_old_versions"," - `get_collections` with is_published=True should not return versions that were previously - published but have a new version - " -"passed","Thu Oct 03 15:30:47 GMT 2024","Thu Oct 03 15:30:47 GMT 2024","10","tests.unit.scripts","test_tombstone","TestTombstone","","","test__resurrect_collection","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","40","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_collection__ok","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","39","tests.unit.backend.layers.api","test_curation_api","TestDeleteCollection","","","test__delete_revision_collection_by_collection_version_id","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[protocol-https://]","" -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","125","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__to_cxg__simple_anndata_with_corpora_and_dense","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_delete_collection__not_owner","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","0","tests.unit.processing","test_process_download","","","","test_estimate_resource_requirements_positive[adata0-memory_settings0-expected0]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_remove_dataset_from_published_collection_fail"," - Removing a dataset from a published collection should fail - " -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","44","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_when_item_is_not_in_config_but_is_in_env_and_use_env_is_set_we_use_env","" -"passed","Thu Oct 03 15:32:24 GMT 2024","Thu Oct 03 15:32:24 GMT 2024","38","tests.unit.wmg_processing","test_filter_relationships","FilterRelationshipsTests","","","test_filter_relationships","" -"passed","Thu Oct 03 15:31:37 GMT 2024","Thu Oct 03 15:31:37 GMT 2024","237","tests.unit.backend.wmg","test_query","QueryPrimaryFilterDimensionsTest","","","test__multiple_dimensions__returns_all_dimensions_and_terms_as_tuples","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","26","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_collection_id_returns_revision_of_published_collection","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","3","tests.unit.backend.layers.api","test_version","TestVersion","","","test_get","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","11","tests.unit.processing","test_spatial_assets_utils","","","","test__convert_uns_to_cxg_group","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","13","tests.unit.processing","test_rollback","","","","test_rollback_published_collection_list","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_spatial_assets_utils","","","","test__upload_assets"," - Test upload assets to S3 - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","22","tests.unit.backend.layers.api","test_portal_api","TestRevision","","","test__start_revision_of_a_collection_w_links__201"," - Start a revision of a collection with links. - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_artifacts_with_rdev_prefix","" -"passed","Thu Oct 03 15:30:45 GMT 2024","Thu Oct 03 15:30:45 GMT 2024","12","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_delete_of_unknown_secret_raises_exception","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[lab_website-https://www.google.com]","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","7","tests.unit.processing","test_process_validate","ProcessingTest","","","test_process_download_validate_success"," - ProcessDownloadValidate should: - 1. Download the h5ad artifact - 2. set validation status to VALID - 3. Set upload status to UPLOADED - 4. set h5ad status to UPLOADED - 5. upload the original file to S3 - 6. upload the labeled file to S3 - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","230","tests.unit.backend.layers.utils","test_aws","TestDeleteManyFromS3","","","test_delete_from_s3_handles_no_files","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters19]","" -"passed","Thu Oct 03 15:30:47 GMT 2024","Thu Oct 03 15:30:47 GMT 2024","1","tests.unit.scripts","test_zenhub_close","TestFilterIssues","","","test_positive","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_ignores_metadata_if_no_doi","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","0","tests.unit.processing","test_matrix_utils","TestMatrixUtils","","","test__is_matrix_sparse__partially_populated_dense_matrix_returns_false","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","2","tests.unit.backend.layers.api","test_curation_api","TestPutLink","","","test__existing_from_link__OK"," - Calling PUT /datasets/:dataset_id on an existing dataset_id should succeed if a valid link is uploaded by the - owner of the collection or a super curator - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollectionPostUploadLink","","","test__link_no_auth__401","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","3","tests.unit.processing","test_matrix_utils","TestEnforceCanonical","","","test_adata_with_noncanonical_raw_X","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","95","tests.unit.backend.layers.business","test_business","TestGetAllDatasets","","","test_get_all_private_datasets_ok"," - Private datasets the user is authorized to view can be retrieved with `get_all_private_collection_versions_with_datasets`. - " -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters65]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_rollback","","","","test_rollback[rollback_args0]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","14","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_dataset_version","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","1","tests.unit.processing.schema_migration","test_dataset_migrate","TestDatasetMigrate","","","test_dataset_migrate_revision","" -"passed","Thu Oct 03 15:32:16 GMT 2024","Thu Oct 03 15:32:17 GMT 2024","1207","tests.unit.wmg_processing","test_expression_summary_default","ExpressionSummaryDefaultTests","","","test_expression_summary_default","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","2","tests.unit.processing.schema_migration","test_collection_migrate","TestCollectionMigrate","","","test_filter_schema_version","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","82","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_datasets_by_schema_200","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_OK","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters96]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","16","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_with_removed_datasets__OK"," - Publish a revision with delete datasets. - " -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_private_collection_crossref_checked_ok"," - When publishing a new collection with a DOI, a Crossref check should be made. - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollectionUploadLinkCurators","","","test__can_upload_dataset_to_non_owned_collection_as_super_curator"," - A super curator can upload a dataset to a non-owned collection - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestSetPreviousDatasetVersion","","","test_revision_with_no_previous_version","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","3","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__get_key__200","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test_get_collection_with_dataset_no_metadata"," - GET collection should work when the collection has datasets with no metadata. - This happens when the dataset did not complete ingestion yet. - " -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","121","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__to_cxg__simple_anndata_no_corpora_and_dense","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","12","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_create_collection_version_multiple_auto_versions_true_fails"," - Given a canonical collection with a published version and an unpublished version where is_auto_version is True, - creating another unpublished collection version where is_auto_version is True will fail. - " -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","22","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_get_collection_versions_for_canonical_ok"," - `get_collection_versions_from_canonical` can be used to retrieve all the versions - for a canonical collection, whether those are published, active or neither - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","1","tests.unit.backend.layers.common","test_validation","","","","test_invalid_characters_in_field[\x7ftext]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters53]","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","4","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_api_double_calls","Checks that, if a gene fails on the first ID search, ncbi_provider will search again (with gene name)" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[doi-https://www.google.com]","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","17","tests.unit.backend.layers.business","test_business","TestCollectionUtilities","","","test__restore_previous_collection_version"," - Test restoring a previous version of a collection - " -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","3","tests.unit.processing.schema_migration","test_log_errors_and_cleanup","TestLogErrorsAndCleanup","","","test_OK","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","9","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_resurrect_collection_ok"," - A tombstoned Collection can be resurrected - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_public_collection_verify_consortia_sorted__OK_2","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","3","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_gene_info_with_id_and_name"," - Successfully calls NCBIProvider fetch and search functions with both ID and name params - " -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","2","tests.unit.processing","test_process_download","TestProcessDownload","","","test_download_unknown_uri"," - Call process download using unknown - " -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","2","tests.unit.processing.schema_migration","test_collection_migrate","TestCollectionMigrate","","","test_migrate_published_collection","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_dataset_asset__dataset_NOT_FOUND","" -"passed","Thu Oct 03 15:38:43 GMT 2024","Thu Oct 03 15:38:43 GMT 2024","9","tests.unit.backend.cellguide.pipeline","test_valid_explorer_cxgs","TestValidExplorerCxgs","","","test__valid_explorer_cxgs","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters20]","" -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","35","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__create_h5ad_data_file__copy_if_var_index_name_not_in_columns","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","14","tests.unit.backend.layers.api","test_portal_api","TestRevision","","","test__revision_not_owner__403"," - Start a revision on a collection as a non-owner. - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollectionPostUploadLink","","","test__oversized__413","" -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","1","tests.unit.processing","test_dataset_submissions","TestDatasetSubmissions","","","test__non_owner__raises_error","" -"passed","Thu Oct 03 15:34:03 GMT 2024","Thu Oct 03 15:34:03 GMT 2024","2","tests.unit.processing","test_handle_error","","","","test_get_failure_slack_notification_message_with_dataset_not_found","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","1","tests.unit.processing.schema_migration","test_gather_collections","TestGatherCollections","","","test_with_private","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_order_unauthorized__403","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:52 GMT 2024","2585","tests.unit.wmg_processing","test_cell_type_ordering","CellTypeOrderingTests","","","test_cell_type_orderings","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters6]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_artifacts_delete_h5ad","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters46]","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","6","tests.unit.backend.layers.api","test_app","TestAPI","","","test__api_index__returns_200","If this fails then the server does not work" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters17]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters9]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters41]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters38]","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters59]","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","11","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_collection_with_x_approximate_distribution_none__OK","" -"passed","Thu Oct 03 15:31:09 GMT 2024","Thu Oct 03 15:32:00 GMT 2024","50057","tests.unit.wmg_processing","test_expression_summary_and_cell_counts","ExpressionSummaryAndCellCountsTests","","","test_expression_summary_and_cell_counts","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters79]","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","29","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_dataset_in_a_collection","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","0","tests.unit.processing","test_process_download","","","","test_estimate_resource_requirements_positive[adata2-memory_settings2-expected2]","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","8","tests.unit.backend.layers.api","test_curation_api","TestPostRevision","","","test__post_revision_by_collection_version_id_403","" -"passed","Thu Oct 03 15:30:58 GMT 2024","Thu Oct 03 15:30:58 GMT 2024","0","tests.unit.backend.wmg.api.common","test_wmg_api_helpers","","","","test_sanitize_api_query_dict[input_query1-expected_sanitized_query1]","" -"skipped","Thu Oct 03 15:30:53 GMT 2024","Thu Oct 03 15:30:53 GMT 2024","1","tests.unit.wmg_processing","test_cube_pipeline","TestCubePipe","","","test_pipeline_creates_files"," - Test the pipeline successfully copies from mock s3, loads corpus and correctly builds cube/cell_ordering files - and correctly uploads files to mock s3 - " -"passed","Thu Oct 03 15:31:10 GMT 2024","Thu Oct 03 15:31:10 GMT 2024","2","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_missing_gene__request_returns_400","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__dataset_meta__404","" -"passed","Thu Oct 03 15:30:51 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","1","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_throws_exception_if_request_fails_with_non_2xx_code"," - Asserts a CrossrefFetchException if the GET request return a 500 error (any non 2xx will work) - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_private_collection_dataset_no_auth_401","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","7","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__create_collection_strip_string_fields","" -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","1","tests.unit.processing","test_dataset_submissions","TestDatasetSubmissions","","","test__missing_curator_file_name__raises_error","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","0","tests.unit.backend.layers.utils","test_semvar_utils","TestSemvarUtils","","","test__prerelease_properly_formatted_semvar__returns_true","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","5","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_get_collection_version_from_canonical_unpublished_ok"," - `get_collection_version_from_canonical` retrieves the unpublished version connected - to the canonical collection, if no published version is available - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters51]","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[data_source-http://somewhere.org/path/?abcd=123]","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","16","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_revision_crossref_checked_ok"," - Crossref should be called to check for updates to the publisher metadata when publishing - a revision that has a DOI. - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_spatial_assets_utils","","","","test__upload_assets_failure"," - Test upload assets to S3 when the upload fails - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_add_empty_dataset_ok"," - An empty dataset can be added to a collection when `create_empty_dataset` is called. - The resulting dataset should be empty and in a state ready for processing. - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","7","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_delete_private_collection_version__ok","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection_consortia","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters77]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","4","tests.unit.processing","test_spatial_assets_utils","","","","test__create_deep_zoom_assets_exception","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters88]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters15]","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[other-.com]","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestS3Credentials","","","test__generate_s3_credentials__Not_Owner","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","6","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__collection_level_processing_status__SUCCESS","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","5","tests.unit.processing","test_processing","ProcessingTest","","","test_reprocess_cxg_success","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollectionsCurators","","","test_delete_non_owned_private_collection_as_super_curator__ok","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters63]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters21]","" -"passed","Thu Oct 03 15:31:10 GMT 2024","Thu Oct 03 15:31:10 GMT 2024","154","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_explicit_cell_ordering__returns_correct_cell_ordering","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_rejects_doi_not_in_crossref","" -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","0","tests.unit.processing","test_color_conversion_utils","TestColorConversionUtils","","","test_convert_color_to_hex_format","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters76]","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","50","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_dataset_shape","" -"passed","Thu Oct 03 15:30:45 GMT 2024","Thu Oct 03 15:30:47 GMT 2024","2062","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_update_of_existing_secret_updates_secret","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","37","tests.unit.backend.layers.api","test_portal_api","TestRevision","","","test__start_revision_of_a_collection__201"," - Start a revision of a collection. - " -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","16","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_dataset_artifact_download_data_ok"," - Calling `get_dataset_artifact_download_data` should yield downloadable data - " -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","2","tests.unit.processing","test_matrix_utils","TestMatrixUtils","","","test__is_matrix_sparse__giant_matrix_returns_false_early","" -"passed","Thu Oct 03 15:33:18 GMT 2024","Thu Oct 03 15:33:18 GMT 2024","96","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__to_cxg__simple_anndata_with_different_var_index_than_h5ad","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","28","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionVersionID","","","test_get_collection_version_ok","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_add_dataset_artifact_wrong_type_fail"," - Adding a dataset artifact with an unsupported type should fail - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","15","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionVersions","","","test__get_collection_versions_not_published_canonical__404","" -"passed","Thu Oct 03 15:30:57 GMT 2024","Thu Oct 03 15:30:57 GMT 2024","19","tests.unit.backend.wmg.api.common","test_rollup","","","","test__rollup[no_compare_dim_one_of_the_tissues_has_no_gene_expressions_at_all-input_cell_counts_df3-expected_cell_counts_df3-input_gene_expr_df3-expected_gene_expr_df3]"," - Test that the `rollup` function correctly accumulates (or rolls up) gene-expression - values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths - grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ). - - The input: - - 1. A cell type ontology subgraph consisting of 4 cell types. - - CL:0000127 - ├── CL:0000644 - ├── CL:0002605 - └── CL:0002627 - - 2. A gene expression dataframe consisting of expression numeric values for each - (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. - 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id. - This value is held in a column called `n_cells_tissue`. - 6. A cell counts dataframe that consists of cell counts for each - (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. - 7. We set the `n_cells_tissue` column values to 1000 for all rows - in the gene expression dataframe. - 8. We set all other numeric column values to `1` in the gene expression dataframe. - - The expected output: - - 1. A rolled up gene expression dataframe. - 2. A rolled up cell counts dataframe. - 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe - does not change for all rows because it should not be rolled up the cell type ontology - ancestor paths. - 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`) - in the rolled up gene expression dataframe hold the correct rolled up values. - 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct - rolled up values. - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters30]","" -"passed","Thu Oct 03 15:30:51 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","19","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__get_title_and_citation_from_doi","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","11","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_get_collection_version_from_canonical_published_ok"," - `get_collection_version_from_canonical` retrieves the active published version connected - to the canonical collection, when available - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","8","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__call_delete_dataset__twice","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","75","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_private_datasets_200"," - Tests /curation/v1/datasets endpoint with different credentials and visibility filters. - - Test data setup: - - published_collection_1: 2 datasets - - published_collection_2: 1 dataset, other owner - - published_collection_3: 1 dataset, previously revised and published - - unpublished_collection_1: 3 datasets - - unpublished_collection_2: 2 datasets, other owner - - published_collection_1_revision: 3 datasets (one new, one modified) - - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","10","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_with_auth__OK_5","revision_of contains None if the collection is public" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters86]","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","8","tests.unit.backend.layers.api","test_curation_api","TestPutLink","","","test__from_link__Not_Owner"," - Calling PUT /datasets/:dataset_id should fail with 403 Unauthorized - if the authenticated user is not the owner of a collection - " -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","1","tests.unit.processing.schema_migration","test_gather_collections","TestGatherCollections","","","test_with_revision","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters74]","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","3","tests.unit.processing","test_process_download","TestProcessDownload","","","test_download_from_dropbox_uri"," - Call process download using a dropbox uri - " -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","3","tests.unit.processing","test_process_validate","ProcessingTest","","","test_process_validate_fail"," - If the validation is not successful, the processing pipeline should: - 1. Set the processing status to INVALID - 2. Set a validation message accordingly - " -"passed","Thu Oct 03 15:30:53 GMT 2024","Thu Oct 03 15:30:53 GMT 2024","0","tests.unit.wmg_processing","test_cube_pipeline","TestCubePipe","","","test_versioned_s3_paths"," - Tests that the path we use for writing the snapshot is the versioned path. - - NOTE: Ideally, we would want this to be a true test of the cube pipeline that actually runs the pipeline, - mocks the S3 upload, and then verifies that the API reads are pulling from the correct mocked S3 files. - This way, we're testing the high-level functionality of the cube pipeline and the API calls directly. - Since our testing infra doesn't currently support S3 mocks well, the past of least resistance is to test - the lower level functions that WMG uses to figure out where to write and read snapshots from. - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[lab_website-http://somewhere.org/path/?abcd=123]","" -"passed","Thu Oct 03 15:30:51 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","3","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_throws_exception_if_request_cannot_be_parsed"," - Asserts an CrossrefParseException if the GET request succeeds but cannot be parsed - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","7","tests.unit.processing","test_rollback","","","","test_rollback_private_collection","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","3","tests.unit.processing","test_process_download","TestProcessDownload","","","test_download_from_s3_uri"," - Call process download using an s3 uri - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","12","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__cancel_dataset_download__ok","" -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","9","tests.unit.processing","test_cxg_generation_utils","TestCxgGenerationUtils","","","test__convert_dictionary_to_cxg_group__writes_successfully","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters26]","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","1","tests.unit.processing","test_handle_error","TestCleanupArtifacts","","","test_cleanup_artifacts__OK[]","Check that all artifacts are deleted for the given cases." -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_normalizes_doi","" -"passed","Thu Oct 03 15:31:10 GMT 2024","Thu Oct 03 15:31:11 GMT 2024","479","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_no_genes__returns_200_and_correct_response","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_fails_on_published_collection"," - `publish_collection_version` should fail if called on a collection version that is already published. - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","27","tests.unit.backend.layers.api","test_portal_api","TestRevision","","","test__revision__403"," - Starting a revision on a revision. - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","10","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_collection_with_dataset_failing_pipeline","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters83]","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters61]","" -"passed","Thu Oct 03 15:31:13 GMT 2024","Thu Oct 03 15:31:13 GMT 2024","14","tests.unit.backend.wmg.data","test_snapshot","","","","test_get_wmg_snapshot_fullpath[None]","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[doi-https://]","" -"passed","Thu Oct 03 15:31:04 GMT 2024","Thu Oct 03 15:31:10 GMT 2024","5748","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__markers_returns_200_and_empty_dictionary_for_bad_celltypes","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","9","tests.unit.backend.layers.api","test_portal_api","TestCollectionPutUploadLink","","","test__reupload_public_dataset__403","cannot reupload a public published dataset" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","1","tests.unit.processing","test_process_download","","","","test_get_job_definion_name[environ2-dp-test-ingest-process-fake_dataset_id]","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_all_user_datasets_for_index_requires_auth","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__collection_level_processing_status__FAILURE","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestGetCollectionVersion","","","test_get_published_collection_version_for_published_collection_is_none"," - An unpublished collection should not be obtained using get_collection - Instead, `get_collection_version` should be used - " -"passed","Thu Oct 03 15:30:51 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","1","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_parses_authors_and_dates_correctly","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","5","tests.unit.backend.layers.business","test_business","TestSetCollectionVersionDatasetsOrder","","","test_set_collection_version_datasets_order_invalid_dataset_fail"," - Attempting to set the order of the datasets in a collection version with a list that contains an invalid - dataset should fail. - " -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters68]","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_rejects_invalid_doi","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters23]","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","7","tests.unit.processing.schema_migration","test_log_errors_and_cleanup","TestLogErrorsAndCleanup","","","test_with_errors","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","6","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection_strip_string_fields","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters35]","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","8","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__can_publish_non_owned_collection_as_super_curator","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__update_private_collection_dataset_not_authorized_403","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","1","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_from_file","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","0","tests.unit.backend.layers.utils","test_math_utils","TestMathUtils","","","test__sizeof_formatted__converts_to_gb","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","14","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_delete_published_collection__ok","Published collections are tombstoned." -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_adds_publisher_metadata","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestUpdateCollection","","","test_update_published_collection_fail"," - Updating a collection version that is published should fail - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","20","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_unbpublished_revision__OK","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_rollback","","","","test_rollback__unsupported_rollback_type","" -"passed","Thu Oct 03 15:30:51 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","2","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_unescapes_journal_correctly","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","12","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_order__OK","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","1","tests.unit.backend.layers.common","test_validation","","","","test_invalid_email[email@.]","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters57]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters3]","" -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","6","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__error_if_missing_raw_h5ad","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","3","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__create_key__401","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[data_source-google.com]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters18]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_spatial_assets_utils","","","","test__invalid_input_metadata_copy"," - Test case to verify that a KeyError is raised when passing invalid input metadata - " -"passed","Thu Oct 03 15:30:47 GMT 2024","Thu Oct 03 15:30:47 GMT 2024","0","tests.unit.scripts","test_zenhub_close","TestFilterIssues","","","test_with_blocking_issues_in_issue_list","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","1","tests.unit.backend.layers.common","test_validation","","","","test_invalid_email[@place.com]","" -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","55","tests.unit.processing","test_cxg_generation_utils","TestCxgGenerationUtils","","","test__convert_matrices_to_cxg_arrays__sparse_array_only_store_nonzeros","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","149","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_with_updated_metadata_ok"," - Publishing a collection with updated metadata should succeed, but not update revised_at - " -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","121","tests.unit.backend.layers.api","test_curation_api","TestPostRevision","","","test__post_revision__OK","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_public_collection_owner__405","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestRevision","","","test__revision_nonexistent__403"," - Start a revision on a non-existing collection. - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters2]","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection__OK","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","1","tests.unit.processing","test_process_download","","","","test_estimate_resource_requirements_positive[adata1-memory_settings1-expected1]","" -"passed","Thu Oct 03 15:33:45 GMT 2024","Thu Oct 03 15:34:03 GMT 2024","18458","tests.unit.processing","test_handle_error","","","","test_non_migration_event_triggers_slack","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","12","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_revision_same_doi_publisher_metadata_updated_ok"," - When publishing a revision - and there is no change in DOI - publisher metadata should be updated - if the deposited date is after the revised at or published at date of the corresponding collection. - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","74","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__explorer_portal_integration"," - Tests the explorer <-> portal integration. - The steps carried out by this test are: - 1. Generate the explorer_url - 2. Call the `get_dataset_identifiers` endpoint, retrieve `collection_id` and `dataset_id` from there - 3. Call the GET /collections/:collection_id endpoint, locate the dataset - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","5","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_private_collection__OK","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[protocol-google.com]","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__cancel_dataset_download__user_not_collection_owner","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[lab_website-.com]","" -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","3","tests.unit.processing","test_dataset_submissions","TestDatasetSubmissions","","","test__upload_update_by_dataset_canonical_id__OK"," - Processing starts when an update of a dataset is uploaded using canonical ids - - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestCreateCollection","","","test_create_collection_with_consortia_ok"," - A collection with consortia can be created using `create_collection` - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_invalid_email[@.]","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","0","tests.unit.processing","test_matrix_utils","TestMatrixUtils","","","test__is_matrix_sparse__partially_populated_sparse_matrix_returns_true","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","19","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_update_crossref_metadata_changed_doi_returns_doi_update_ok"," - The check for changes in Crossref returns the existing DOI and the returned Crossref DOI if there is a - change between the two. - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","12","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_no_auth_visibility_public__OK","" -"passed","Thu Oct 03 15:30:52 GMT 2024","Thu Oct 03 15:32:00 GMT 2024","67972","tests.unit.backend.de.api","test_v1","DeAPIV1Tests","","","test__differentialExpression_returns_expected_results","" -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","25","tests.unit.processing","test_cxg_generation_utils","TestCxgGenerationUtils","","","test__convert_dataframe_to_cxg_array__writes_successfully","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters10]","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","3338","tests.unit.processing","test_processing","ProcessingTest","","","test_process_all","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[raw_data-https://]","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","10","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__verify_expected_public_collection_fields","" -"passed","Thu Oct 03 15:34:48 GMT 2024","Thu Oct 03 15:34:55 GMT 2024","6969","tests.unit.backend.cellguide.pipeline","test_metadata_generator","TestMetadataGenerator","","","test__cell_metadata_generator","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","7","tests.unit.backend.layers.api","test_portal_api","TestDatasetCurators","","","test__cancel_dataset_download__202_user_not_collection_owner_as_super_curator","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","10","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_cleanup_occurs_after_publication_of_private_collection"," - Outdated, unused Dataset assets and rows in private Collection not deleted until after Collection is published - " -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","17","tests.unit.processing","test_dataset_metadata_update","TestDatasetMetadataUpdaterWorker","","","test_update_cxg__with_spatial_deepzoom_assets","" -"passed","Thu Oct 03 15:31:10 GMT 2024","Thu Oct 03 15:31:10 GMT 2024","70","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__primary_filter_dimensions__returns_200","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","2","tests.unit.processing","test_handle_error","TestCleanupArtifacts","","","test_cleanup_artifacts__no_buckets","Check that no files are deleted if buckets are not specified." -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","0","tests.unit.processing","test_matrix_utils","TestEnforceCanonical","","","test_adata_with_canonical_X","" -"passed","Thu Oct 03 15:32:30 GMT 2024","Thu Oct 03 15:33:22 GMT 2024","51818","tests.unit.wmg_processing","test_marker_genes","MarkerGenesTests","","","test_marker_genes_cube","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_add_dataset_to_published_collection_fail"," - Adding a dataset to a published collection should result in a failure - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestCollectionPostUploadLink","","","test__link_fake_collection__403","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","14","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_with_auth__OK_3","The 'revising_in' attribute is equal to the id of the revision Collection" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","19","tests.unit.backend.layers.business","test_business","TestGetCollectionVersion","","","test_get_unpublished_collection_versions_from_canonical"," - Unpublished Collection versions can be retrieved from a canonical Collection - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[lab_website-https://]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters14]","" -"passed","Thu Oct 03 15:31:10 GMT 2024","Thu Oct 03 15:31:10 GMT 2024","2","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_missing_organism__request_returns_400","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_artifacts_with_no_match","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_invalid_characters_in_field[text\x01]","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","1","tests.unit.backend.layers.thirdparty","test_s3_provider","TestS3Provider","","","test__object_deletion","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[data_source-.com]","" -"passed","Thu Oct 03 15:34:03 GMT 2024","Thu Oct 03 15:34:03 GMT 2024","2","tests.unit.processing","test_handle_error","","","","test_get_failure_slack_notification_message_with_dataset_version_id_none","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","8","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_public_collection_dataset_not_authorized_403","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","8","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_no_auth_401","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_artifact_metadata_ok"," - The dataset artifact metadata can be updated using `update_dataset_artifact_metadata` - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestS3Credentials","","","test__generate_s3_credentials__No_Auth","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","20","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_dataset_in_a_tombstoned_collection_410","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_invalid_email[email@place.]","" -"passed","Thu Oct 03 15:30:58 GMT 2024","Thu Oct 03 15:30:58 GMT 2024","0","tests.unit.backend.wmg.api.common","test_wmg_api_helpers","","","","test_sanitize_api_query_dict[input_query4-expected_sanitized_query4]","" -"passed","Thu Oct 03 15:31:13 GMT 2024","Thu Oct 03 15:31:19 GMT 2024","5798","tests.unit.backend.wmg","test_query","CensusCubeQueryParamsTest","","","test__cube_query_params_for_expression_summary_cube","" -"passed","Thu Oct 03 15:30:57 GMT 2024","Thu Oct 03 15:30:57 GMT 2024","420","tests.unit.backend.wmg.api.common","test_expression_dotplot","ExpressionDotPlotTest","","","test__query_non_indexed_dim_single_valued__returns_correct_result","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestCollectionUtilities","","","test__restore_previous_collection_version__no_previous_versions"," - Test restoring a previous version of a collection fails when there are no previous versions - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","15","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_all_datasets_for_user_index","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","5","tests.unit.backend.layers.business","test_business","TestGetCollectionVersion","","","test_get_collection_version_for_unpublished_collection_ok"," - An unpublished collection version can be obtained using `get_collection_version` - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters28]","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","45","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_value_of_existing_secret_returns_value","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_dataset_asset__OK","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[doi-google.com]","" -"skipped","Thu Oct 03 15:33:24 GMT 2024","Thu Oct 03 15:33:24 GMT 2024","0","tests.unit.backend.cellguide.pipeline","test_computational_marker_genes","MarkerGeneCalculatorTests","","","test__marker_gene_calculation","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollectionPostUploadLink","","","test__link__202","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","15","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_deleted_collection_does_not_appear_in_collection_lists","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_dataset_asset__file_SERVER_ERROR"," - `get_dataset_asset` should throw 500 if url or file_size aren't returned from the server - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","7","tests.unit.processing","test_rollback","","","","test_rollback_private_collection_list","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","10","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_with_all_removed_datasets__409"," - Unable to publish a revision with no datasets. - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","14","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_data_submission_policy_version__OK"," - Checks data submission policy is correctly saved on publish of a revision. - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestSetPreviousDatasetVersion","","","test_private_with_no_previous_version","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_spatial_assets_utils","","","","test__fetch_image_fullres"," - Test that _fetch_image returns the fullres image when present. - " -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","43","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_from_aws","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[protocol-.com]","" -"passed","Thu Oct 03 15:30:51 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","0","tests.unit.backend.common","test_feature_flag","TestFeatureFlag","","","test_feature_flag","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","42","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionVersions","","","test__get_collection_versions__200","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","11","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_create_collection_version_ok"," - A collection version can be created using `create_collection_version` - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters48]","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","1","tests.unit.processing.schema_migration","test_publish_revisions","TestPublishRevisions","","","test_run_pos","Positive test case for run method." -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollectionPutUploadLink","","","test__reupload_dataset_not_owner__403","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestUpdateCollection","","","test_update_collection_ok"," - A collection version should be updated when using `update_collection` - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","52","tests.unit.backend.layers.api","test_curation_api","TestGetDatasetVersion","","","test_get_dataset_version_4xx","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","10","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_collection_with_dataset_failing_validation","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","34","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_prior_published_versions_for_dataset"," - Given a canonical dataset id, return all its DatasetVersions that have been part of published CollectionVersions - " -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","16","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__create_h5ad_data_file__non_h5ad_raises_exception","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters40]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters31]","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","2","tests.unit.processing.schema_migration","test_report","","","","test_report","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestCreateCollection","","","test_create_collection_ok"," - A collection can be created using `create_collection` - " -"passed","Thu Oct 03 15:33:18 GMT 2024","Thu Oct 03 15:33:18 GMT 2024","1","tests.unit.processing","test_handle_error","","","","test_parse_event_with_error_cause","" -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:18 GMT 2024","147","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__to_cxg__simple_anndata_with_corpora_and_sparse","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","27","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_collection_id__ok","Verify the test collection exists and the expected fields exist." -"passed","Thu Oct 03 15:31:10 GMT 2024","Thu Oct 03 15:31:10 GMT 2024","4","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_containing_tissue__request_returns_400","" -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","2","tests.unit.processing","test_dataset_submissions","TestDatasetSubmissions","","","test__missing_collection_id__raises_error","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","23","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_all_user_collections_for_index"," - The `my-collections/index` endpoint should return all public collections and the private - collections the user has WRITE access to. Curators can see all public collectoins and private collections where - they are the owner. Super Curators can see all public and private collections. - " -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","276","tests.unit.processing","test_color_conversion_utils","TestColorConversionUtils","","","test_term_vs_label_colors","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","21","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_with_added_dataset_ok"," - Publishing a version with a dataset added should succeed - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters50]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters37]","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","20","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_with_replaced_dataset_ok"," - Publishing a version with a dataset replaced should succeed - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","3","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__get_key__401","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","47","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_custom_secret_name","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionVersions","","","test__get_collection_versions_tombstoned__410","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[other-https://]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_create_empty_dataset_version_for_current_dataset","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","27","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_tombstoned_dataset_in_a_collection_410","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","1","tests.unit.processing.schema_migration","test_publish_revisions","TestPublishRevisions","","","test_run_neg","Run method when check_datasets returns errors." -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","2","tests.unit.backend.layers.api","test_curation_api","TestPutLink","","","test__new_from_link__OK"," - Calling PUT /datasets/:dataset_id should succeed if a valid link is uploaded by the owner of the collection or - a super curator - " -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","3","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_gene_checker_call"," - Successfully calls GeneChecker if called with only a name parameter - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","12","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_with_auth__OK_1","The 'revising_in' attribute is None for unauthorized public collections" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","7","tests.unit.backend.layers.api","test_app","TestAPI","","","test__curation_api_swagger_ui__returns_200","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","1","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_api_search_calls"," - In combination with test_api_fetch_calls, checks external API call in search requests (_search_gene_uid) - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_blank_fields","" -"passed","Thu Oct 03 15:30:51 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","0","tests.unit.backend.common","test_citation","TestCitation","","","test__format_citation","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__remove_collection__consortia__OK","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters34]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters45]","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","10","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__doi_does_not_exist__BAD_REQUEST","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_rollback","","","","test_rollback[rollback_args2]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters49]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_create_empty_dataset_version_for_current_dataset__error_if_published","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","13","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_published_collection_verify_body_is_reshaped_correctly__OK","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","14","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_revision_dataset_owner_202","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","16","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__update_revision_dataset__ok","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","13","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_singletonness","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","0","tests.unit.backend.layers.business","test_business","TestCreateCollection","","","test_create_collection_with_doi_error_ignores_metadata_ok"," - A collection with an invalid DOI will be created with empty publisher metadata - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","18","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__list_collection__check_owner__auth","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection_remove_doi_deletes_metadata","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","0","tests.unit.backend.layers.utils","test_json","TestCustomJSONEncoder","","","test_timedelta","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_super","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_spatial_assets_utils","","","","test__fetch_image_key_error"," - Test that _fetch_image raises KeyError when neither fullres nor hires images are present. - " -"passed","Thu Oct 03 15:30:47 GMT 2024","Thu Oct 03 15:30:47 GMT 2024","1","tests.unit.scripts","test_zenhub_close","TestCloseReadyForProd","","","test_close_ready_for_prod_with_blocked_issues","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","13","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_all_datasets_ok"," - All dataset that belong to a published collection can be retrieved with `get_all_mapped_datasets` - " -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_with_collection_201","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","3","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__delete_key__202","" -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","3","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses__invalid_cxg_status_0","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","2","tests.unit.processing.schema_migration","test_gather_collections","TestGatherCollections","","","test_with_mixed_collection_types","" -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","11","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__missing_cxg","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters75]","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","6","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test_get_collection_with_no_datasets","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters93]","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_rejects_two_dois","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__remove_collection_consortia","" -"passed","Thu Oct 03 15:31:12 GMT 2024","Thu Oct 03 15:31:13 GMT 2024","422","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__schema4__filter_request_with_nonempty_criteria__excludes_comma_delimited_ethnicity_values","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_rejects_invalid_consortia","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","17","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_dataset_published_at_with_new_dataset_ok"," - When publishing a collection that contains a new dataset, `published_at` for the new dataset should be updated - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:45 GMT 2024","2074","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_delete_of_existing_secret_deletes_secret","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","10","tests.unit.backend.layers.api","test_portal_api","TestCollectionPostUploadLink","","","test_link_public_collection__403","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","8","tests.unit.processing","test_process_download","TestProcessDownload","","","test_process_download_success"," - ProcessValidate should: - 1. Download the h5ad artifact - 2. Set upload status to UPLOADED - 3. upload the original file to S3 - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[data_source-https://www.google.com]","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters72]","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_private_datasets_400","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_add_dataset_with_invalid_link_fail"," - Adding a dataset with a wrong link should result in a failure - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[data_source-://]","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_artifact_metadata_public_collection_error"," - Attemping to update a dataset in a public collection raises an exception. - " -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","1","tests.unit.processing.schema_migration","test_error_wrapper","","","","test_error_wrapper","" -"passed","Thu Oct 03 15:30:52 GMT 2024","Thu Oct 03 15:30:53 GMT 2024","1097","tests.unit.wmg_processing","test_cube_pipeline","TestCubePipe","","","test__pipeline_fails_if_census_schema_version_unsupported","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_status__ok","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","0","tests.unit.processing","test_matrix_utils","TestMatrixUtils","","","test__is_matrix_sparse__zero_and_one_hundred_percent_threshold","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_artifacts_artifact_type_doesnt_match_regex","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__cancel_dataset_download__user_not_logged_in","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters0]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_cleanup_occurs_after_deletion_for_private_collection"," - Updated Dataset assets and rows in private Collection should not be deleted until after Collection is deleted - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[raw_data-google]","" -"passed","Thu Oct 03 15:30:51 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","1","tests.unit.backend.common","test_common","","","","test_remove_duplicate_dataset_assets_no_duplicates","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters33]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters29]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","0","tests.unit.backend.layers.business","test_business","TestCreateCollection","","","test_create_collection_with_bad_links_fail"," - A collection where a link isn't a http URI cannot be created - " -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","4","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__new_dataset_version_bad_processing_status","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_collection_id_retrieves_unpublished_version"," - If a collection is unpublished, GET /collections/:collection_id retrieves the unpublished version - when passed the canonical collection_id - " -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","1","tests.unit.processing","test_extract_metadata","TestProcessingValidate","","","test_get_spatial_metadata__is_single_and_fullres_true","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_artifact_metadata_invalid_title_error"," - Attempting to update a dataset with an invalid title raises an exception. - " -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","117","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__to_cxg__simple_anndata_with_corpora_and_dense_using_feature_name_var_index","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters84]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","4","tests.unit.processing","test_rollback","","","","test_rollback_private_dataset[True]","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","13","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__verify_expected_revision_collection_fields","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters16]","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","13","tests.unit.backend.layers.business","test_business","TestCollectionUtilities","","","test__delete_datasets_from_public_access_bucket"," - Test Dataset deletes when tombstoning a public Collection with published and updated Datasets in an outstanding - Revision - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[raw_data-http://somewhere.org/path/?abcd=123]","" -"passed","Thu Oct 03 15:35:01 GMT 2024","Thu Oct 03 15:38:28 GMT 2024","206496","tests.unit.backend.cellguide.pipeline","test_ontology_tree","OntologyTreeBuilderTests","","","test__ontology_tree_builder","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_delete_collection_version__already_deleted__403","" -"passed","Thu Oct 03 15:30:45 GMT 2024","Thu Oct 03 15:30:45 GMT 2024","33","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_init_of_existing_secret_retrieves_secret_metadata","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","19","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_dataset_version_from_canonical"," - Get currently published dataset version using canonical dataset ID, or most recent active unpublished dataset - if none are published. - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_invalid_email[email@.com]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","5","tests.unit.backend.layers.business","test_business","TestUpdateCollection","","","test_update_collection_partial_ok"," - `update_collection` should support partial updates: if only a subset of the fields are specified, - the previous field should not be modified - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","10","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__update_private_collection_dataset__ok","" -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","25","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__create_h5ad_data_file__reads_anndata_successfully","" -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","14","tests.unit.processing","test_extract_metadata","TestProcessingValidate","","","test_extract_metadata_find_raw_layer","" -"passed","Thu Oct 03 15:30:47 GMT 2024","Thu Oct 03 15:30:47 GMT 2024","1","tests.unit.scripts","test_zenhub_close","TestCloseReadyForProd","","","test_close_ready_for_prod_with_issues_to_close","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_public_collection_verify_fix_consortia_sort_order_OK","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","8","tests.unit.processing","test_rollback","","","","test_rollback_public_collection","" -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","1031","tests.unit.processing","test_extract_metadata","TestProcessingValidate","","","test_extract_metadata","" -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","3","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses__invalid_h5ad_status_0","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_fails_with_extra_fields","" -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","12","tests.unit.processing","test_cxg_generation_utils","TestCxgGenerationUtils","","","test__convert_ndarray_to_cxg_dense_array__writes_successfully","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","0","tests.unit.backend.layers.utils","test_uri","TestRegisteredSources","","","test_register_neg","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","16","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_nonexistent_collection__4xx","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","10","tests.unit.backend.layers.api","test_curation_api","TestPostRevision","","","test__post_revision__Super_Curator","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters95]","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","4","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_artifact_metadata_invalid_status_error"," - Attempting to update a dataset with a non-success processing status raises an exception. - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__collection_level_processing_status__PENDING","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_not_owner_403","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","30","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_cleanup_occurs_after_revision_is_canceled"," - New Dataset assets and rows not deleted until after revision is canceled (for previously-published Collection) - " -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters80]","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters71]","" -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","135","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__to_cxg__simple_anndata_no_corpora_and_sparse","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestGetCollectionVersion","","","test_get_collection_version_for_published_collection_ok"," - A published collection version can be obtained using `get_collection_version` - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__OK","" -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","25","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__create_h5ad_data_file__no_copy_if_var_index_name_already_in_columns","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","16","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_with_removed_dataset_ok"," - Publishing a version with a dataset removed should succeed - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","1","tests.unit.backend.layers.utils","test_api_key","TestAPIKey","","","test_generate","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","0","tests.unit.backend.layers.utils","test_uri","TestS3URI","","","test__validate_with_invalid_s3_uri__returns_none","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters43]","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_new_collection_no_doi_crossref_not_checked_ok"," - When publishing a new collection without a DOI, no Crossref check should be made. - " -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_returns_canonical_id"," - POST /datasets returns the canonical dataset id on creation. - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_as_not_owner__403"," - Publish a collection as a non-owner returns 403 - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestDatasetArtifactMetadataUpdates","","","test_generate_dataset_citation__no_doi","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","14","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__delete_uploaded_dataset__ok","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","5","tests.unit.backend.layers.business","test_business","TestConcurrentUpdates","","","test_concurrency","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_private_collection_same_doi_publisher_metadata_updated_ok"," - When publishing a private collection - and there is no change in DOI - publisher metadata should be - updated if the deposited date is after the created at date of the corresponding collection. - " -"passed","Thu Oct 03 15:31:12 GMT 2024","Thu Oct 03 15:31:12 GMT 2024","158","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_total_cell_count_per_cell_type","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","7","tests.unit.backend.layers.utils","test_uri","TestRegisteredSources","","","test_from_uri","" -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","11","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__missing_labeled_h5ad","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","0","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_create_collection_version_fails_if_collection_not_exists"," - A collection version can only be created on an existing collection - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","17","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection_links__OK","" -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","3","tests.unit.processing","test_dataset_submissions","TestDatasetSubmissions","","","test__upload_update_by_dataset_id_super__OK"," - Processing starts when an update of a dataset is uploaded by its ID by a super curator - " -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","0","tests.unit.processing","test_process_download","","","","test_create_batch_job_definition_parameters","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestDatasetArtifactMetadataUpdates","","","test_trigger_dataset_artifact_update__error_if_published","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","1","tests.unit.processing.schema_migration","test_collection_migrate","TestCollectionMigrate","","","test_create_migration_revision__published_no_revision","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","0","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_gene_checker"," - GeneChecker successfully creates a dictionary of gene names to gene IDs, - checks validity of gene names, and returns ensembl ID for a gene name. - " -"passed","Thu Oct 03 15:30:51 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","2","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_throws_exception_if_request_fails"," - Asserts a CrossrefFetchException if the GET request fails for any reason - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","6","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_dataset_no_assets","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","41","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_prior_published_dataset_version"," - Given a dataset version id, return the DatasetVersion IF its been part of a published CollectionVersion - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","9","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_delete_collection_version__public__403","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","0","tests.unit.backend.layers.utils","test_json","TestCustomJSONEncoder","","","test_unsupported_type","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","1","tests.unit.processing","test_logger","","","","test_log_suppressed__caught","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters24]","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_invalid_characters_in_field[\x00some data]","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_artifact_metadata_sanitized_ok"," - The dataset artifact metadata can be updated with sanitized values. - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","4","tests.unit.processing","test_rollback","","","","test_rollback_private_dataset[False]","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","1","tests.unit.backend.layers.utils","test_semvar_utils","TestSemvarUtils","","","test__release_only_properly_formatted_semvar__returns_true","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","3","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__delete_key__404","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__list_collection_options__allow","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters66]","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","8","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_private_collection_dataset_owner_202","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","18","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__list_collection__check_owner__no_auth","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPostRevision","","","test__post_revision__Not_Public","" -"passed","Thu Oct 03 15:33:18 GMT 2024","Thu Oct 03 15:33:45 GMT 2024","27189","tests.unit.processing","test_handle_error","","","","test_migration_event_does_not_trigger_slack","" -"passed","Thu Oct 03 15:33:18 GMT 2024","Thu Oct 03 15:33:18 GMT 2024","131","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__to_cxg__with_sparse_column_encoding","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[data_source-google]","" -"passed","Thu Oct 03 15:33:18 GMT 2024","Thu Oct 03 15:33:18 GMT 2024","1","tests.unit.processing","test_handle_error","","","","test_parse_event_with_empty_event","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestPostRevision","","","test__post_revision__no_auth","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","17","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_get_order_custom_sort__OK","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","11","tests.unit.backend.layers.api","test_curation_api","TestDeleteCollection","","","test__delete_private_collection_by_collection_version_id","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_dataset_in_private_collection__ok","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_with_invalid_collection_consortia","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","3","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__delete_key__401","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","381","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_incorrect_gene_ids"," - Successfully raises exception for ensembl IDs that do not exist - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","34","tests.unit.backend.layers.api","test_curation_api","TestDeleteDataset","","","test__delete_published_dataset__405"," - A Dataset that has been published cannot be deleted via the API - " -"passed","Thu Oct 03 15:31:12 GMT 2024","Thu Oct 03 15:31:12 GMT 2024","112","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_single_primary_dims__returns_200_and_correct_response","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","2","tests.unit.processing.schema_migration","test_dataset_migrate","TestDatasetMigrate","","","test_dataset_migrate_private","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestCreateCollection","","","test_create_collection_with_valid_doi_ok"," - A collection can be created with a valid DOI, and the publisher metadata will be added - to the collection - " -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","13","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__invalid_artifact_status","" -"passed","Thu Oct 03 15:30:58 GMT 2024","Thu Oct 03 15:30:58 GMT 2024","3","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__filter_request_with_query_key_not_specified_in_api_spec_returns_400","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","8","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_public_collection_405","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestGetCollectionVersion","","","test_get_published_collection_version_for_published_collection_ok"," - A published collection can be obtained using `get_collection` - " -"passed","Thu Oct 03 15:31:13 GMT 2024","Thu Oct 03 15:31:13 GMT 2024","0","tests.unit.backend.wmg.data","test_snapshot","","","","test_get_wmg_snapshot_schema_dir_rel_path","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__consortia__OK","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_returns_id_on_success","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","3","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__get_key__404","" -"passed","Thu Oct 03 15:30:58 GMT 2024","Thu Oct 03 15:30:58 GMT 2024","68","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__filter_request_with_filter_dims__returns_valid_filter_dims__base_case","" -"passed","Thu Oct 03 15:31:37 GMT 2024","Thu Oct 03 15:31:37 GMT 2024","330","tests.unit.backend.wmg","test_query","QueryPrimaryFilterDimensionsTest","","","test__single_dimension__returns_all_dimension_and_terms","" -"passed","Thu Oct 03 15:30:51 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","1","tests.unit.backend.common","test_common","","","","test_remove_duplicate_dataset_assets","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","16","tests.unit.backend.layers.api","test_curation_api","TestDeleteDataset","","","test__delete_dataset_by_version_id"," - Calling DELETE /collections/:collection_id/datasets/:dataset_id should return a 403 in all cases with auth - credentials, and a 401 without auth credentials - " -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","3","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses__invalid_cxg_status_1","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_private_collection_dataset_invalid_status_405","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__Not_Owner","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","0","tests.unit.backend.layers.utils","test_json","TestCustomJSONEncoder","","","test_datetime","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","1","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_parse_xml_tree_missing_values"," - Returns correct dictionary with missing values if given XML tree with missing values - " -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters55]","" -"passed","Thu Oct 03 15:33:18 GMT 2024","Thu Oct 03 15:33:18 GMT 2024","0","tests.unit.processing","test_handle_error","","","","test_parse_event_with_invalid_error_cause","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_rollback","","","","test_rollback[rollback_args4]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","15","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_published_dataset_in_revision__success","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","182","tests.unit.backend.layers.utils","test_aws","TestDeleteManyFromS3","","","test_delete_from_s3_deletes_all_files","" -"passed","Thu Oct 03 15:30:56 GMT 2024","Thu Oct 03 15:30:57 GMT 2024","367","tests.unit.backend.wmg.api.common","test_expression_dotplot","ExpressionDotPlotTest","","","test__query_non_indexed_dim_single_and_multi_valued__returns_correct_result","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","1","tests.unit.processing.schema_migration","test_gather_collections","TestGatherCollections","","","test_with_migration_revision","" -"passed","Thu Oct 03 15:31:13 GMT 2024","Thu Oct 03 15:31:13 GMT 2024","437","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__schema4__query_request_with_compare_by_ethnicity__excludes_comma_delimited_ethnicity_values","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection_strip_string_fields__OK","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[doi-://]","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters69]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","13","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_with_new_dataset__OK"," - Publish a revision with new datasets. - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","20","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_new_dataset_in_revision__ok","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters13]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters11]","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters89]","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","4","tests.unit.backend.layers.business","test_business","TestSetPreviousDatasetVersion","","","test_with_published_collection","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_ignores_metadata_if_crossref_exception","" -"passed","Thu Oct 03 15:34:03 GMT 2024","Thu Oct 03 15:34:03 GMT 2024","2","tests.unit.processing","test_handle_error","","","","test_get_failure_slack_notification_message_with_missing_collection","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","7","tests.unit.backend.layers.api","test_portal_api","TestCollectionPostUploadLink","","","test__bad_link__400","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestSetPreviousDatasetVersion","","","test_private_restoring_previously_replaced_dataset","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_artifacts_delete_cxg","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters64]","" -"passed","Thu Oct 03 15:30:58 GMT 2024","Thu Oct 03 15:30:58 GMT 2024","1","tests.unit.backend.wmg.api.common","test_wmg_api_helpers","","","","test_sanitize_api_query_dict[input_query3-expected_sanitized_query3]","" -"passed","Thu Oct 03 15:34:03 GMT 2024","Thu Oct 03 15:34:03 GMT 2024","1","tests.unit.processing","test_handle_error","TestCleanupArtifacts","","","test_cleanup_artifacts__OK[validate]","Check that all artifacts are deleted for the given cases." -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestAuthToken","","","test__post_token__404","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","11","tests.unit.backend.layers.business","test_business","TestGetAllCollections","","","test_get_all_collections_with_owner_ok"," - Only collection versions with the specified owner should be returned, including both published and unpublished - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_add_dataset_to_non_existing_collection_fail"," - Calling `ingest_dataset` on a collection that does not exist should fail - " -"passed","Thu Oct 03 15:33:18 GMT 2024","Thu Oct 03 15:33:18 GMT 2024","0","tests.unit.processing","test_handle_error","","","","test_parse_event_without_error_cause","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_collection_with_no_datasets_fail"," - Publishing a collection version with no datasets should fail - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","27","tests.unit.backend.layers.api","test_curation_api","TestS3Credentials","","","test__generate_s3_credentials__OK","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","19","tests.unit.backend.layers.business","test_business","TestUpdateCollection","","","test_update_collection_change_doi__trigger_dataset_artifact_updates"," - A collection updated with a new DOI and containing datasets should trigger artifact updates to update citation - for each dataset - " -"passed","Thu Oct 03 15:30:57 GMT 2024","Thu Oct 03 15:30:57 GMT 2024","19","tests.unit.backend.wmg.api.common","test_rollup","","","","test__rollup[no_compare_dim_gene_expressed_in_one_tissue_but_not_other-input_cell_counts_df2-expected_cell_counts_df2-input_gene_expr_df2-expected_gene_expr_df2]"," - Test that the `rollup` function correctly accumulates (or rolls up) gene-expression - values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths - grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ). - - The input: - - 1. A cell type ontology subgraph consisting of 4 cell types. - - CL:0000127 - ├── CL:0000644 - ├── CL:0002605 - └── CL:0002627 - - 2. A gene expression dataframe consisting of expression numeric values for each - (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. - 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id. - This value is held in a column called `n_cells_tissue`. - 6. A cell counts dataframe that consists of cell counts for each - (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. - 7. We set the `n_cells_tissue` column values to 1000 for all rows - in the gene expression dataframe. - 8. We set all other numeric column values to `1` in the gene expression dataframe. - - The expected output: - - 1. A rolled up gene expression dataframe. - 2. A rolled up cell counts dataframe. - 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe - does not change for all rows because it should not be rolled up the cell type ontology - ancestor paths. - 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`) - in the rolled up gene expression dataframe hold the correct rolled up values. - 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct - rolled up values. - " -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","1","tests.unit.processing","test_extract_metadata","TestProcessingValidate","","","test_get_spatial_metadata__is_single_true_and_no_library_id","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters92]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters47]","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","31","tests.unit.backend.layers.business","test_business","TestGetEntitiesBySchema","","","test_get_latest_published_collection_versions_by_schema"," - Test fetching index of most recently published collection versions with datasets matching a given - CxG schema version - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","10","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__dataset_meta__ok","" -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","3","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__current_dataset_version_bad_processing_status","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","1","tests.unit.processing.schema_migration","test_gather_collections","TestGatherCollections","","","test_with_published","" -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","395","tests.unit.processing","test_color_conversion_utils","TestColorConversionUtils","","","test_anndata_colors_to_cxg_colors","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters1]","" -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","13","tests.unit.processing","test_cxg_generation_utils","TestCxgGenerationUtils","","","test__convert_matrices_to_cxg_arrays__sparse_array_only_store_nonzeros_empty_array","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","0","tests.unit.processing","test_process_download","","","","test_get_job_definion_name[environ0-dp-test-stack-ingest-process-fake_dataset_id]","" -"passed","Thu Oct 03 15:30:58 GMT 2024","Thu Oct 03 15:30:58 GMT 2024","21","tests.unit.backend.wmg.api.common","test_rollup","","","","test__rollup[with_ethnicity_compare_dim_on_single_tissue-input_cell_counts_df4-expected_cell_counts_df4-input_gene_expr_df4-expected_gene_expr_df4]"," - Test that the `rollup` function correctly accumulates (or rolls up) gene-expression - values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths - grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ). - - The input: - - 1. A cell type ontology subgraph consisting of 4 cell types. - - CL:0000127 - ├── CL:0000644 - ├── CL:0002605 - └── CL:0002627 - - 2. A gene expression dataframe consisting of expression numeric values for each - (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. - 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id. - This value is held in a column called `n_cells_tissue`. - 6. A cell counts dataframe that consists of cell counts for each - (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. - 7. We set the `n_cells_tissue` column values to 1000 for all rows - in the gene expression dataframe. - 8. We set all other numeric column values to `1` in the gene expression dataframe. - - The expected output: - - 1. A rolled up gene expression dataframe. - 2. A rolled up cell counts dataframe. - 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe - does not change for all rows because it should not be rolled up the cell type ontology - ancestor paths. - 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`) - in the rolled up gene expression dataframe hold the correct rolled up values. - 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct - rolled up values. - " -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","11","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_collection_id_retrieves_published_version_by_collection_id"," - GET /collections/:collection_id retrieves the published version given a canonical collection_id - " -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","0","tests.unit.processing","test_logger","","","","test_log_suppressed__missed","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters52]","" -"passed","Thu Oct 03 15:30:38 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","1029","tests.unit.backend.layers.api","test_curation_api","TestGetDatasetIdVersions","","","test_get_dataset_id_versions_ok","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","0","tests.unit.processing","test_process_download","","","","test_get_job_definion_name[environ1-dp-test-stack-ingest-process-fake_dataset_id]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_invalid_data_submission_policy_version__400"," - Checks for failure on submit of a data submission policy version that is not a valid version. - " -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters91]","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_collection_url","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_no_auth__OK","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_add_dataset_to_unpublished_collection_ok"," - A dataset can be added to a collection when `ingest_dataset` is called. - The resulting dataset should be empty and in a state ready for processing. - " -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","3","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses_0","" -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","20","tests.unit.processing","test_dataset_metadata_update","TestDatasetMetadataUpdaterWorker","","","test_update_cxg","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","24","tests.unit.backend.layers.api","test_curation_api","TestGetDatasetVersion","","","test_get_dataset_version_ok","" -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","26","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__create_h5ad_data_file__copies_index_of_obs_and_var_to_column","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","1","tests.unit.backend.layers.utils","test_json","TestCuratorJSONEncoder","","","test_datetime","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","1","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[doi-google]","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters85]","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","16","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_revision_same_doi_publisher_metadata_not_updated_ok"," - When publishing a revision - and there is no change in DOI - publisher metadata should not be - updated if the deposited date is before the revised at or originally published at date of the - corresponding collection. - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","9","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_order_published_collection__403","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_fails_if_data_missing","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[other-http://somewhere.org/path/?abcd=123]","" -"passed","Thu Oct 03 15:30:57 GMT 2024","Thu Oct 03 15:30:57 GMT 2024","39","tests.unit.backend.wmg.api.common","test_rollup","","","","test__rollup[no_compare_dim_all_tissues_have_all_cell_types-input_cell_counts_df0-expected_cell_counts_df0-input_gene_expr_df0-expected_gene_expr_df0]"," - Test that the `rollup` function correctly accumulates (or rolls up) gene-expression - values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths - grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ). - - The input: - - 1. A cell type ontology subgraph consisting of 4 cell types. - - CL:0000127 - ├── CL:0000644 - ├── CL:0002605 - └── CL:0002627 - - 2. A gene expression dataframe consisting of expression numeric values for each - (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. - 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id. - This value is held in a column called `n_cells_tissue`. - 6. A cell counts dataframe that consists of cell counts for each - (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. - 7. We set the `n_cells_tissue` column values to 1000 for all rows - in the gene expression dataframe. - 8. We set all other numeric column values to `1` in the gene expression dataframe. - - The expected output: - - 1. A rolled up gene expression dataframe. - 2. A rolled up cell counts dataframe. - 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe - does not change for all rows because it should not be rolled up the cell type ontology - ancestor paths. - 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`) - in the rolled up gene expression dataframe hold the correct rolled up values. - 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct - rolled up values. - " -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_all_user_collections_for_index_requires_auth","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_artifacts_CollectionDeleteException_with_H5AD","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestPostCollection","","","test__create_collection__no_auth","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","9","tests.unit.backend.layers.business","test_business","TestDatasetArtifactMetadataUpdates","","","test_trigger_dataset_artifact_update__with_new_dataset_version_id","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestPostCollection","","","test__create_collection__OK","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters94]","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection_partial__OK","" -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","3","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses_1","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_tombstone_collection_ok"," - A Collection can be tombstoned - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_rollback","","","","test_rollback[rollback_args3]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_spatial_assets_utils","","","","test__crop_to_aspect_ratio[200-150]"," - Test the cropping method to ensure the image is cropped to a square - " -"passed","Thu Oct 03 15:30:55 GMT 2024","Thu Oct 03 15:30:56 GMT 2024","370","tests.unit.backend.wmg.api.common","test_expression_dotplot","ExpressionDotPlotTest","","","test__query_all_indexed_dims_multi_valued__returns_correct_result","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection_same_doi_does_not_update_metadata","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","14","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_public_collection__OK","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","2","tests.unit.processing","test_matrix_utils","TestEnforceCanonical","","","test_adata_with_noncanonical_X_and_raw_X","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","13","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_when_item_is_not_in_config_not_in_env_we_raise","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters12]","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestAuthToken","","","test__post_token__401","" -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:24 GMT 2024","6752","tests.unit.backend.cellguide.pipeline","test_canonical_marker_genes","CanonicalMarkerGeneCompilerTests","","","test__canonical_marker_genes","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters87]","" -"passed","Thu Oct 03 15:31:10 GMT 2024","Thu Oct 03 15:31:10 GMT 2024","2","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_empty_request__returns_400","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_replace_dataset_in_published_collection_fail"," - Replacing a dataset that belongs to a published collection should fail - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_with_auth__OK_2","The 'revising_in' attribute is None for collections which lack a revision" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_spatial_assets_utils","","","","test__fetch_image_hires"," - Test that _fetch_image returns the hires image when fullres is not present. - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_private_collection_dataset_invalid_collection_404","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_with_collection_version_id_403","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[raw_data-google.com]","" -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","1","tests.unit.processing.schema_migration","test_publish_revisions","TestPublishRevisions","","","test_check_datasets_fail_status","Check datasets when one of the dataset has failed during the ingestion process." -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","1","tests.unit.processing.schema_migration","test_publish_revisions","TestPublishRevisions","","","test_check_datasets_not_latest_version","Check datasets when one of the dataset has not been migrated to the latest schema version." -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPostCollection","","","test__create_collection__strip_string_fields","" -"passed","Thu Oct 03 15:30:44 GMT 2024","Thu Oct 03 15:30:44 GMT 2024","31","tests.unit.wmg_processing","test_cell_type_ancestors","CellTypeAncestorTests","","","test_cell_type_ancestors","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","10","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_nonexistent_dataset_4xx","" -"passed","Thu Oct 03 15:30:47 GMT 2024","Thu Oct 03 15:30:47 GMT 2024","1","tests.unit.scripts","test_zenhub_close","","","","test_format_issue","" -"passed","Thu Oct 03 15:32:06 GMT 2024","Thu Oct 03 15:32:10 GMT 2024","3698","tests.unit.wmg_processing","test_expression_summary_and_cell_counts_diffexp","ExpressionSummaryDiffexpTests","","","test_expression_summary_diffexp","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[lab_website-google.com]","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters25]","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","12","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__update_private_collection_dataset_collection_published__403","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","0","tests.unit.backend.layers.utils","test_json","TestCustomJSONEncoder","","","test_illegal_characters","" -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","9","tests.unit.processing","test_dataset_metadata_update","TestDatasetMetadataUpdaterWorker","","","test_update_h5ad","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","2","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_replace_dataset_on_empty_dataset_does_not_generate_new_ok"," - Calling `ingest_dataset` and specifying an existing dataset that is empty should start the ingestion - without creating a new dataset version - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_dataset_versions","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","18","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_cleanup_with_auto_version"," - When publishing an auto_version, do NOT cleanup dataset versions from an open revision - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__remove_all_collection_consortia","" -"passed","Thu Oct 03 15:30:56 GMT 2024","Thu Oct 03 15:30:56 GMT 2024","353","tests.unit.backend.wmg.api.common","test_expression_dotplot","ExpressionDotPlotTest","","","test__query_all_indexed_dims_single_value__returns_correct_result","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters32]","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[other-://]","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollectionsCurators","","","test_view_non_owned_private_collection__ok","" -"passed","Thu Oct 03 15:34:55 GMT 2024","Thu Oct 03 15:35:01 GMT 2024","5958","tests.unit.backend.cellguide.pipeline","test_metadata_generator","TestMetadataGenerator","","","test__tissue_metadata_generator","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_dataset_status_for_uploaded_dataset_ok"," - Calling `get_dataset_status` should yield the processing status - " -"passed","Thu Oct 03 15:33:14 GMT 2024","Thu Oct 03 15:33:14 GMT 2024","1","tests.unit.processing.schema_migration","test_dataset_migrate","TestDatasetMigrate","","","test_dataset_migrate_published","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[lab_website-google]","" -"passed","Thu Oct 03 15:30:55 GMT 2024","Thu Oct 03 15:30:55 GMT 2024","374","tests.unit.backend.wmg.api.common","test_expression_dotplot","ExpressionDotPlotTest","","","test__query_agg_cell_type_counts__returns_correct_result","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_bad_id__403"," - Publish a collection with a bad uuid (non existant) returns 403 - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollectionPutUploadLink","","","test__dataset_not_in_collection__404"," - Trying to publish a dataset belonging to a different collection raises a 404 - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_no_auth_visibility_private__403","" -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","1","tests.unit.processing","test_extract_metadata","TestProcessingValidate","","","test_get_spatial_metadata__is_single_false","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","0","tests.unit.backend.layers.utils","test_json","TestCustomJSONEncoder","","","test_enum","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","1","tests.unit.processing","test_handle_error","TestCleanupArtifacts","","","test_cleanup_artifacts__not_download_validate","Check that file in the artifact bucket are not delete if error_step is not download-validate." -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionVersions","","","test__get_collection_versions_not_a_uuid__403","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[other-google]","" -"passed","Thu Oct 03 15:31:13 GMT 2024","Thu Oct 03 15:31:13 GMT 2024","0","tests.unit.backend.wmg.data","test_snapshot","","","","test_get_wmg_snapshot_rel_path","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","14","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_revision__OK","" -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","3","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses__invalid_rds_status_0","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_as_non_autorized__401"," - Publish a collection as a non authenticated user returns 403 - " -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","3","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_gene_info_with_id"," - Successfully calls NCBIProvider fetch and search functions with a parameter of only gene ID - " -"passed","Thu Oct 03 15:31:11 GMT 2024","Thu Oct 03 15:31:11 GMT 2024","529","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_request_multi_primary_dims_only__returns_200_and_correct_response","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","1","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_public_collection_verify_consortia_sorted__OK_1","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","30","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_delete_collection_revision__ok","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestUpdateCollection","","","test_update_collection_change_doi"," - A collection updated with a new DOI should get new publisher metadata from Crossref - " -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","1","tests.unit.processing","test_dataset_submissions","TestDatasetSubmissions","","","test__nonexistent_dataset__raises_error","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters44]","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__doi__OK","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__update_private_collection_dataset_no_authentication__401","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestAuthToken","","","test__post_token__401_old_token","The old token fails to authenticate" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","132","tests.unit.backend.layers.utils","test_aws","TestDeleteManyFromS3","","","test_delete_from_s3_raises_error_for_missing_dataset_id","" -"passed","Thu Oct 03 15:34:46 GMT 2024","Thu Oct 03 15:34:48 GMT 2024","2003","tests.unit.backend.cellguide.pipeline","test_gpt_descriptions","TestGptDescriptionGenerator","","","test__gpt_seo_description_generator","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","74","tests.unit.backend.layers.api","test_curation_api","TestDeleteCollection","","","test__delete_tombstone_collection","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_dataset_asset__asset_NOT_FOUND","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_sorts_consortia","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","12","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_update_crossref_metadata_same_doi_returns_none_ok"," - The check for changes in Crossref returns None if there is no change between the existing DOI and the - DOI returned from Crossref. - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[other-https://www.google.com]","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__update_private_collection_dataset_invalid_collection__403","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__cancel_dataset_download__dataset_does_not_exist","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","26","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_a_curators_collections","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","14","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_create_collection_version_is_auto_version_succeeds__with_revision"," - Given a canonical collection with a published version and an unpublished version where is_auto_version is False, - creating another unpublished collection version where is_auto_version is True will succeed. - " -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","2","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_api_fetch_calls"," - Mocks API key for NCBI requests, checks call counts and the correct external API calls. - Will break if the external API call is down! - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_spatial_assets_utils","","","","test__crop_to_aspect_ratio[100-55]"," - Test the cropping method to ensure the image is cropped to a square - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","5","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_datasets_nonexistent_collection_4xx","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","20","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__links__OK","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestSetCollectionVersionDatasetsOrder","","","test_set_collection_version_datasets_order_no_custom_order_ok"," - The order of the datasets in a collection version is the default cell count, descending. - " -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_collection_id__403_not_found"," - GET /collections/:collection_id returns 403 if an invalid is specified - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_spatial_assets_utils","","","","test__valid_input_metadata_copy"," - Test case for verifying the required metadata is present - " -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters81]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","5","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__create_key__201","" -"passed","Thu Oct 03 15:33:15 GMT 2024","Thu Oct 03 15:33:15 GMT 2024","11","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__raw_h5ad_updated","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","4","tests.unit.processing","test_spatial_assets_utils","","","","test__create_deep_zoom_assets","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","16","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__can_retrieve_created_collection","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_spatial_assets_utils","","","","test__crop_to_aspect_ratio[55-30]"," - Test the cropping method to ensure the image is cropped to a square - " -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","44","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_when_item_is_in_config_but_not_in_env_and_use_env_is_set_we_use_config","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","18","tests.unit.backend.layers.business","test_business","TestGetCollectionVersion","","","test_get_collection_version_for_tombstoned_collection"," - A tombstoned Collection's versions can only be obtained if the `get_tombstoned` flag is explicitly set to True - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","11","tests.unit.backend.layers.business","test_business","TestSetPreviousDatasetVersion","","","test_revision_restoring_previously_published_dataset","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters4]","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__create_collection__InvalidParameters_DOI","" -"skipped","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_auth0_manager","TestSession","","","test_session_refresh","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","11","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_order_get_default_sort__OK","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters73]","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","11","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_all_datasets_for_index_with_ontology_expansion","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","16","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_resurrect_collection_with_tombstoned_dataset_ok"," - Individually-tombstoned Datasets should remain tombstoned after resurrection of their parent Collection. - " -"passed","Thu Oct 03 15:30:53 GMT 2024","Thu Oct 03 15:30:53 GMT 2024","4","tests.unit.wmg_processing","test_cube_pipeline","TestCubePipe","","","test_exception_handle_catches_errors","" -"passed","Thu Oct 03 15:30:57 GMT 2024","Thu Oct 03 15:30:57 GMT 2024","19","tests.unit.backend.wmg.api.common","test_rollup","","","","test__rollup[no_compare_dim_one_ancestor_cell_type_missing_in_one_tissue_but_exists_in_all_others-input_cell_counts_df1-expected_cell_counts_df1-input_gene_expr_df1-expected_gene_expr_df1]"," - Test that the `rollup` function correctly accumulates (or rolls up) gene-expression - values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths - grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ). - - The input: - - 1. A cell type ontology subgraph consisting of 4 cell types. - - CL:0000127 - ├── CL:0000644 - ├── CL:0002605 - └── CL:0002627 - - 2. A gene expression dataframe consisting of expression numeric values for each - (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. - 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id. - This value is held in a column called `n_cells_tissue`. - 6. A cell counts dataframe that consists of cell counts for each - (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. - 7. We set the `n_cells_tissue` column values to 1000 for all rows - in the gene expression dataframe. - 8. We set all other numeric column values to `1` in the gene expression dataframe. - - The expected output: - - 1. A rolled up gene expression dataframe. - 2. A rolled up cell counts dataframe. - 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe - does not change for all rows because it should not be rolled up the cell type ontology - ancestor paths. - 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`) - in the rolled up gene expression dataframe hold the correct rolled up values. - 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct - rolled up values. - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","8","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__verify_expected_private_collection_fields","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","4","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_replace_dataset_on_non_existing_dataset_fail"," - Calling `ingest_dataset` and specifying a non existant dataset_version_id should fail - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__links_None_does_not_remove_publisher_metadata","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestCreateCollection","","","test_create_collection_with_links_ok"," - A collection with links can be created using `create_collection` - " -"passed","Thu Oct 03 15:31:19 GMT 2024","Thu Oct 03 15:31:25 GMT 2024","5898","tests.unit.backend.wmg","test_query","QueryTest","","","test__query_expression_summary_default_cube__returns_correct_results","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","25","tests.unit.backend.layers.api","test_portal_api","TestDeleteRevision","","","test__delete_revision_unauth__403"," - An unauthorized user should not be able to delete a collection revision - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection_partial_data__OK","" -"passed","Thu Oct 03 15:30:51 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","1","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_throws_exception_if_request_fails_with_404"," - Asserts a CrossrefFetchException if the GET request fails for any reason - " -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters54]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","6","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__regenerate_key__201","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_spatial_assets_utils","","","","test__crop_to_aspect_ratio[23-11]"," - Test the cropping method to ensure the image is cropped to a square - " -"passed","Thu Oct 03 15:31:11 GMT 2024","Thu Oct 03 15:31:12 GMT 2024","452","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_request_multi_primary_dims_only_with_compare__returns_200_and_correct_response","" -"passed","Thu Oct 03 15:30:58 GMT 2024","Thu Oct 03 15:30:58 GMT 2024","243","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__filter_request_with_filter_dims__returns_valid_filter_dims","" -"passed","Thu Oct 03 15:38:28 GMT 2024","Thu Oct 03 15:38:43 GMT 2024","15508","tests.unit.backend.cellguide.pipeline","test_source_collections_generator","TestSourceCollectionsGenerator","","","test__source_collections_generator","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","282","tests.unit.backend.layers.utils","test_uri","TestS3URI","","","test_download","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__collection_level_processing_status__INITIALIZED_as_PENDING","" -"passed","Thu Oct 03 15:31:25 GMT 2024","Thu Oct 03 15:31:31 GMT 2024","5992","tests.unit.backend.wmg","test_query","QueryTest","","","test__query_marker_genes_cube__returns_correct_all_markers","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters22]","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","6","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_private_collection_dataset_not_authorized_403","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__add_new_collection_consortia","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","35","tests.unit.backend.layers.api","test_portal_api","TestDeleteRevision","","","test__revision_deleted__204"," - Delete a collection under revision. - " -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestPutLink","","","test_from_link__403"," - Calling PUT /datasets/:dataset_id should fail if version IDs are used for unpublished collections or - for referencing datasets - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","44","tests.unit.backend.layers.business","test_business","TestGetAllCollections","","","test_get_all_collections_published_ok"," - If published filter flag is True, only published, non-tombstoned collections should be returned - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_artifacts_delete_no_artifacts","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","3","tests.unit.processing","test_matrix_utils","TestMatrixUtils","","","test__is_matrix_sparse_with_column_shift_encoding__giant_matrix_returns_false_early","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","44","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionVersionID","","","test_get_collection_version_4xx","" -"passed","Thu Oct 03 15:31:00 GMT 2024","Thu Oct 03 15:31:03 GMT 2024","3061","tests.unit.wmg_processing","test_dataset_metadata","DatasetMetadataTests","","","test_dataset_metadata","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters58]","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection__403","" -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","4","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses__invalid_h5ad_status_1","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","0","tests.unit.backend.layers.utils","test_semvar_utils","TestSemvarUtils","","","test__prerelease_release_version__returns_true","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_order_unauthenticated__401","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters82]","" -"passed","Thu Oct 03 15:33:22 GMT 2024","Thu Oct 03 15:33:22 GMT 2024","0","tests.unit.wmg_processing","test_ontology_labels","OntologyLabelTests","","","test__gene_label","" -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","0","tests.unit.processing","test_process_download","","","","test_remove_prefix","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_ok"," - A collection version can be published using `publish_collection` - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","10","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__doi_is_not_CURIE_reference__BAD_REQUEST","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","4","tests.unit.backend.layers.api","test_app","TestAPI","","","test__catchall_exception_handler","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","10","tests.unit.backend.layers.business","test_business","TestSetCollectionVersionDatasetsOrder","","","test_set_collection_version_datasets_order_ok"," - The order of the datasets in a collection version is set using `set_collection_version_datasets_order`. - " -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[doi-.com]","" -"passed","Thu Oct 03 15:33:16 GMT 2024","Thu Oct 03 15:33:16 GMT 2024","3","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses__invalid_rds_status_1","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[raw_data-://]","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","15","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_revision_no_doi_crossref_not_checked_ok"," - Crossref should not be called to check for updates to the publisher metadata when publishing - a revision that has no DOI. - " -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_status_ok"," - The dataset processing status can be updated using `update_dataset_status` - " -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters97]","" -"passed","Thu Oct 03 15:31:12 GMT 2024","Thu Oct 03 15:31:12 GMT 2024","474","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__schema4__filter_request_with_empty_criteria__excludes_comma_delimited_ethnicity_values","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestDatasetCurators","","","test__get_status__200_for_non_owned_dataset_as_super_curator","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","16","tests.unit.backend.layers.business","test_business","TestUpdateCollection","","","test_update_published_collection_fail__dataset_status_pending"," - Updating a collection version with a DOI change IF there is a dataset in non-finalized status should fail - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","9","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__delete_public_dataset_returns__405","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","1","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_correct_parse_xml_tree"," - Successfully parses a properly formatted XML tree for gene information - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_with_auth__OK_6","revision_of contains None if the collection is unpublished" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[raw_data-https://www.google.com]","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","14","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_with_auth__OK_4","revision_of contains the id to their published counterpart" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","14","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_delete_collection_version_ok"," - A collection version can be deleted using `delete_collection_version` - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","18","tests.unit.backend.layers.api","test_curation_api","TestDeleteDataset","","","test__delete_dataset_by_canonical_id"," - Calling DELETE /collections/:collection_id/datasets/:dataset_id should work according to the - auth token passed and when using canonical ids. In this case, the unpublished collection - version will be looked up and used for deletion. - " -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","19","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_all_collections_for_index"," - The `collections/index` endpoint should only return public collections - " -"passed","Thu Oct 03 15:34:04 GMT 2024","Thu Oct 03 15:34:04 GMT 2024","1","tests.unit.processing","test_handle_error","TestCleanupArtifacts","","","test_cleanup_artifacts__OK[None]","Check that all artifacts are deleted for the given cases." -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","5","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_replace_dataset_in_wrong_status_fail"," - Calling `ingest_dataset` and specifying an existing dataset should fail if the dataset is not in the - final status - " -"passed","Thu Oct 03 15:31:13 GMT 2024","Thu Oct 03 15:31:13 GMT 2024","18","tests.unit.backend.wmg.data","test_snapshot","","","","test_get_wmg_snapshot_fullpath[/tmp]","" -"passed","Thu Oct 03 15:30:51 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","19","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_does_not_call_crossref_in_test","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","5","tests.unit.backend.layers.api","test_curation_api","TestS3Credentials","","","test__generate_s3_credentials__by_collection_version_id","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","11","tests.unit.backend.layers.api","test_curation_api","TestPutLink","","","test__from_link__Not_Public"," - Calling PUT /datasets/:dataset_id should fail with 403 Unauthorized - if trying to upload to a published collection - " -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","TestTypeConversionUtils","","","test__get_schema_type_hint_from_dtype","" -"passed","Thu Oct 03 15:30:39 GMT 2024","Thu Oct 03 15:30:39 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_nonexistent_collection_403","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_remove_dataset_from_unpublished_collection_ok"," - A dataset can be removed from a collection version using `delete_dataset`. This should delete the dataset. - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestUpdateCollection","","","test_update_collection_same_doi"," - A collection updated with the same DOI should not trigger a Crossref call - " -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters56]","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__list_collection_options__no_allow","" -"passed","Thu Oct 03 15:30:47 GMT 2024","Thu Oct 03 15:30:47 GMT 2024","0","tests.unit.scripts","test_zenhub_close","TestFilterIssues","","","test_filter_issues_with_openprs","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","8","tests.unit.backend.layers.api","test_portal_api","TestCollectionPutUploadLink","","","test__reupload_unpublished_dataset__202"," - Reuploads an unpublished dataset - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","14","tests.unit.backend.layers.api","test_curation_api","TestDeleteCollection","","","test__delete_private_collection","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters62]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestCreateCollection","","","test_create_collection_with_not_found_doi_fail"," - A collection with a DOI that cannot be found on Crossref will not be created - " -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","29","tests.unit.backend.layers.api","test_curation_api","TestDeleteCollection","","","test__delete_public_collection","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","45","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_when_item_is_in_config_and_is_in_env_and_use_env_is_set_we_use_env","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","5","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_fails_on_mismatching_dataset_schema_versions"," - `publish_collection_version` should fail if called on a collection version with datasets that have mismatching - schema versions - " -"passed","Thu Oct 03 15:31:10 GMT 2024","Thu Oct 03 15:31:10 GMT 2024","205","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__primary_filter_dimensions__returns_valid_response_body","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","13","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_create_collection_version_multiple_auto_versions_false_fails"," - Given a canonical collection with a published version and an unpublished version with is_auto_version == False, - creating an unpublished collection version where is_auto_verison is False will fail. - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","16","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_dataset_is_primary_data_shape","" -"passed","Thu Oct 03 15:34:03 GMT 2024","Thu Oct 03 15:34:03 GMT 2024","1","tests.unit.processing","test_handle_error","","","","test_get_failure_slack_notification_message_with_dataset_and_collection","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters39]","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","176","tests.unit.backend.layers.utils","test_uri","TestS3URI","","","test__file_info__returns_file_size","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","10","tests.unit.processing","test_rollback","","","","test_rollback_private_dataset_list","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","9","tests.unit.backend.layers.business","test_business","TestDatasetArtifactMetadataUpdates","","","test_trigger_dataset_artifact_update","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[protocol-http://somewhere.org/path/?abcd=123]","" -"passed","Thu Oct 03 15:30:55 GMT 2024","Thu Oct 03 15:30:55 GMT 2024","324","tests.unit.backend.wmg.api.common","test_expression_dotplot","ExpressionDotPlotTest","","","test__query_agg_tissue_counts__returns_correct_result","" -"passed","Thu Oct 03 15:34:08 GMT 2024","Thu Oct 03 15:34:08 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters105]","" -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_missing_data_submission_policy_version__400"," - Checks for failure on missing data submission policy version. - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollectionPostUploadLink","","","test__link_not_owner__403","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_delete_collection__does_not_exist","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","10","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_private_collection_dataset_super_202","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[data_source-https://]","" -"passed","Thu Oct 03 15:30:36 GMT 2024","Thu Oct 03 15:30:36 GMT 2024","14","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_only_private_collections_with_auth__OK","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_dataset_assets","" -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_order_missing_datasets__400","" -"passed","Thu Oct 03 15:33:17 GMT 2024","Thu Oct 03 15:33:17 GMT 2024","24","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__slash_in_attribute_name","" -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_private_datasets_403","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[protocol-://]","" -"passed","Thu Oct 03 15:30:43 GMT 2024","Thu Oct 03 15:30:43 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[other-google.com]","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","14","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_sets_is_auto_version_False"," - When publishing a collection version, is_auto_version should be set to False - " -"passed","Thu Oct 03 15:30:37 GMT 2024","Thu Oct 03 15:30:37 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__no_auth","" -"passed","Thu Oct 03 15:30:50 GMT 2024","Thu Oct 03 15:30:50 GMT 2024","6","tests.unit.backend.layers.utils","test_uri","TestS3URI","","","test__validate_with_valid_s3_uri__ok","" -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","4","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_artifact_metadata_missing_title_error"," - Attempting to update a dataset without providing a title raises an exception. - " -"passed","Thu Oct 03 15:30:41 GMT 2024","Thu Oct 03 15:30:41 GMT 2024","5","tests.unit.backend.layers.business","test_business","TestSetCollectionVersionDatasetsOrder","","","test_set_collection_version_datasets_order_length_fail"," - Attempting to set the order of the datasets in a collection version with a list of different length should fail. - " -"passed","Thu Oct 03 15:30:42 GMT 2024","Thu Oct 03 15:30:42 GMT 2024","16","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_dataset_published_at_with_replaced_dataset_ok"," - When publishing a collection that contains a replaced dataset, - `published_at` for the replaced dataset should not be updated - " -"passed","Thu Oct 03 15:30:40 GMT 2024","Thu Oct 03 15:30:40 GMT 2024","8","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_order_invalid_collection__403","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 2024","1","tests.unit.processing","test_rollback","","","","test_rollback[rollback_args1]","" -"passed","Thu Oct 03 15:30:51 GMT 2024","Thu Oct 03 15:30:51 GMT 2024","0","tests.unit.backend.common","test_doi","TestDoi","","","test__clean_doi","" -"passed","Thu Oct 03 15:34:07 GMT 2024","Thu Oct 03 15:34:07 GMT 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18, 19, 20, 21,\n 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32,\n 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43,\n 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54,\n 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,\n 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76,\n 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87,\n 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,\n 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109,\n 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120,\n 121, 122, 123, 124, 125, 126, 127, -128, -127, -126, -125,\n -124, -123, -122, -121, -120, -119, -118, -117, -116, -115, -114,\n -113, -112, -111, -110, -109, -108, -107, -106, -105, -104, -103,\n -102, -101, -100, -99, -98, -97, -96, -95, -94, -93, -92,\n -91, -90, -89, -88, -87, -86, -85, -84, -83, -82, -81,\n -80, -79, -78, -77, -76, -75, -74, -73, -72, -71, -70,\n -69, -68, -67, -66, -65, -64, -63, -62, -61, -60, -59,\n -58, -57, -56, -55, -54, -53, -52, -51, -50, -49, -48,\n -47, -46, -45, -44, -43, -42, -41, -40, -39, -38, -37,\n -36, 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-81, -80, -79, -78, -77, -76, -75, -74, -73,\n -72, -71, -70, -69, -68, -67, -66, -65, -64, -63, -62,\n -61, -60, -59, -58, -57, -56, -55, -54, -53, -52, -51,\n -50, -49, -48, -47, -46, -45, -44, -43, -42, -41, -40,\n -39, -38, -37, -36, -35, -34, -33, -32, -31, -30, -29,\n -28, -27, -26, -25, -24, -23, -22, -21, -20, -19, -18,\n -17, -16, -15, -14, -13, -12, -11, -10, -9, -8, -7,\n -6, -5, -4, -3, -2, -1, 0, 1, 2, 3, 4,\n 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,\n 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26,\n 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37,\n 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48,\n 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59,\n 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70,\n 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,\n 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92,\n 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,\n 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125,\n 126, 127, -128, -127, -126, -125, -124, -123, -122, -121, -120,\n -119, -118, -117, -116, -115, -114, -113, -112, -111, -110, -109,\n -108, -107, -106, -105, -104, -103, -102, -101, -100, -99, -98,\n -97, -96, -95, -94, -93, -92, -91, -90, -89, -88, -87,\n -86, -85, -84, -83, -82, -81, -80, -79, -78, -77, -76,\n -75, -74, -73, -72, -71, -70, -69, -68, -67, -66, -65,\n -64, -63, -62, -61, -60, -59, -58, -57, -56, -55, -54,\n -53, -52, -51, -50, -49, -48, -47, -46, -45, -44, -43,\n -42, -41, -40, -39, -38, -37, -36, -35, -34, -33, -32,\n -31, -30, -29, -28, -27, -26, -25, -24, -23, -22, -21,\n -20, -19, -18, -17, -16, -15, -14, -13, -12, -11, -10,\n -9, -8, -7, -6, -5, -4, -3, -2, -1, 0, 1,\n 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23,\n 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34,\n 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45,\n 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56,\n 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67,\n 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,\n 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89,\n 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100,\n 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111,\n 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122,\n 123, 124, 125, 126, 127, -128, -127, -126, -125, -124, -123,\n -122, -121, -120, -119, -118, -117, -116, -115, -114, -113, -112,\n -111, -110, -109, -108, -107, -106, -105, -104, -103, -102, -101,\n -100, -99, -98, -97, -96, -95, -94, -93, -92, -91, -90,\n -89, -88, -87, -86, -85, -84, -83, -82, -81, -80, -79,\n -78, -77, -76, -75, -74, -73, -72, -71, -70, -69, -68,\n -67, -66, -65, -64, -63, -62, -61, -60, -59, -58, -57,\n -56, -55, -54, -53, -52, -51, -50, -49, -48, -47, -46,\n -45, -44, -43, -42, -41, -40, -39, -38, -37, -36, -35,\n -34, -33, -32, -31, -30, -29, -28, -27, -26, -25],\n dtype=int8), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters3]","uid":"7fdcbba169603962","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647777,"stop":1727969647777,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ..\n995 -29\n996 -28\n997 -27\n998 -26\n999 -25\nLength: 1000, dtype: int8, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters4]","uid":"75952b49e1f0eaa8","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647781,"stop":1727969647781,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n -34, -33, -32, -31, -30, -29, -28, -27, -26, -25],\n dtype='int8', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters5]","uid":"57b3fb83c2b62e91","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647784,"stop":1727969647785,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters6]","uid":"df49325e4d58fbca","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647790,"stop":1727969647790,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 0, 1, 2, 3,\n 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16,\n 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29,\n 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42,\n 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55,\n 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68,\n 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,\n 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94,\n 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107,\n 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120,\n 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133,\n 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146,\n 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159,\n 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172,\n 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185,\n 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198,\n 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211,\n 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224,\n 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237,\n 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250,\n 251, 252, 253, 254, 255, 0, 1, 2, 3, 4, 5, 6, 7,\n 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20,\n 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,\n 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,\n 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59,\n 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72,\n 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85,\n 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,\n 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111,\n 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124,\n 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137,\n 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150,\n 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163,\n 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176,\n 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189,\n 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202,\n 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215,\n 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228,\n 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241,\n 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254,\n 255, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11,\n 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,\n 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37,\n 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,\n 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,\n 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76,\n 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89,\n 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102,\n 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115,\n 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128,\n 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141,\n 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154,\n 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167,\n 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180,\n 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193,\n 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206,\n 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219,\n 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231],\n dtype=uint8), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters7]","uid":"c19ddb2cdcf5d7f2","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647796,"stop":1727969647796,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 227\n996 228\n997 229\n998 230\n999 231\nLength: 1000, dtype: uint8, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters8]","uid":"aa58e98b9049f52a","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647800,"stop":1727969647800,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 222, 223, 224, 225, 226, 227, 228, 229, 230, 231],\n dtype='uint8', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters9]","uid":"58a5e150025a8803","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647803,"stop":1727969647804,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters10]","uid":"2a1d1ab1039f4539","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647809,"stop":1727969647809,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=int16), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters11]","uid":"32e61aac4752f915","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647815,"stop":1727969647815,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int16, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters12]","uid":"745f52a5d5795b19","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647820,"stop":1727969647820,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int16', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters13]","uid":"a7ee68dca9ce6e70","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647823,"stop":1727969647824,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters14]","uid":"c9756ebccb0fc9c7","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647829,"stop":1727969647829,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint16), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters15]","uid":"8977eb4b9032d1d9","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647835,"stop":1727969647835,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: uint16, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters16]","uid":"2b28b15cb9caca8d","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647839,"stop":1727969647839,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='uint16', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters17]","uid":"89753cce7440f0f5","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647842,"stop":1727969647842,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters18]","uid":"478864767f4da2c","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647848,"stop":1727969647848,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=int32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters19]","uid":"232110170408f2fa","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647854,"stop":1727969647854,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int32, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters20]","uid":"4b23dd4d3e0980ab","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647858,"stop":1727969647858,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int32', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters21]","uid":"833f070d9c7ed1f1","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647861,"stop":1727969647861,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters22]","uid":"b2b8705e8c0d5ca8","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647867,"stop":1727969647867,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters23]","uid":"7e16912b5185f68e","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647873,"stop":1727969647873,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: uint32, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters24]","uid":"569c75c6467c62ff","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647877,"stop":1727969647878,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='uint32', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters25]","uid":"fdf8ba80b396329c","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647881,"stop":1727969647881,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters26]","uid":"a606cb1992dc0d8c","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647886,"stop":1727969647887,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999]), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters27]","uid":"4fc71cc8fec57ac0","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647892,"stop":1727969647893,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int64, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters28]","uid":"18d8b796d4971c36","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647896,"stop":1727969647897,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int64', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters29]","uid":"d7d84936b8695b59","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647900,"stop":1727969647900,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters30]","uid":"3668587761f134b7","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647906,"stop":1727969647906,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint64), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters31]","uid":"57fb25fb7c2a512e","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647912,"stop":1727969647912,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: uint64, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters32]","uid":"d36629cb2fd7ac4f","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647916,"stop":1727969647916,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='uint64', 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-124.0, -123.0, -122.0, -121.0,\n -120.0,\n ...\n 990.0, 991.0, 992.0, 993.0, 994.0, 995.0, 996.0, 997.0, 998.0,\n 999.0],\n dtype='float32', length=1129), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': None}"],"tags":[]},{"name":"test_type_inference[parameters37]","uid":"b0835345249c3f0c","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647936,"stop":1727969647936,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ nan, -inf, -1., -0., 0., 0., 1., inf, nan],\n dtype=float32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': 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precision'}}"],"tags":[]},{"name":"test_type_inference[parameters43]","uid":"b398a539716b6b1d","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647960,"stop":1727969647961,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ nan, -inf, -1., -0., 0., 0., 1., inf, nan]), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': {'level': 30, 'output': 'may lose precision'}}"],"tags":[]},{"name":"test_type_inference[parameters44]","uid":"559513b6487cef20","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647964,"stop":1727969647965,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([-1.79769313e+308, 0.00000000e+000, 1.79769313e+308]), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': {'level': 30, 'output': 'may lose precision'}}"],"tags":[]},{"name":"test_type_inference[parameters45]","uid":"79ff32120a8d52f","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647968,"stop":1727969647969,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': {'level': 30, 'output': 'may lose precision'}}"],"tags":[]},{"name":"test_type_inference[parameters46]","uid":"a7f58201744f92ff","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647972,"stop":1727969647973,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([-9223372036854775808, 9223372036854775807]), 'throws': }"],"tags":[]},{"name":"test_type_inference[parameters47]","uid":"f9fa2b72e2c83930","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647976,"stop":1727969647976,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 18446744073709551615], dtype=uint64), 'throws': }"],"tags":[]},{"name":"test_type_inference[parameters48]","uid":"e27639df6e97d9d","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1727969647979,"stop":1727969647979,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 4294967295], dtype=uint32), 'throws': 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602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 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214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 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408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint64), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"}],"links":[],"hidden":false,"retry":false,"extra":{"severity":"normal","retries":[],"categories":[],"history":{"statistic":{"failed":0,"broken":0,"skipped":0,"passed":238,"unknown":0,"total":238},"items":[{"uid":"7af9da5d38e80e62","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22176//#testresult/7af9da5d38e80e62","status":"passed","time":{"start":1727969518119,"stop":1727969518119,"duration":0}},{"uid":"e447b3c7cb185e24","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22175//#testresult/e447b3c7cb185e24","status":"passed","time":{"start":1727963911492,"stop":1727963911492,"duration":0}},{"uid":"39e635f20351bb64","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22174//#testresult/39e635f20351bb64","status":"passed","time":{"start":1727962889058,"stop":1727962889058,"duration":0}},{"uid":"c2427859acc5285d","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22173//#testresult/c2427859acc5285d","status":"passed","time":{"start":1727962691420,"stop":1727962691421,"duration":1}},{"uid":"a60e29dce2240705","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22171//#testresult/a60e29dce2240705","status":"passed","time":{"start":1727914284520,"stop":1727914284521,"duration":1}},{"uid":"b6b7df59fd6c8284","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22169//#testresult/b6b7df59fd6c8284","status":"passed","time":{"start":1727910100351,"stop":1727910100351,"duration":0}},{"uid":"50f531deebbc1a8d","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22164//#testresult/50f531deebbc1a8d","status":"passed","time":{"start":1727904039328,"stop":1727904039328,"duration":0}},{"uid":"92f03a4c70f62f1a","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22163//#testresult/92f03a4c70f62f1a","status":"passed","time":{"start":1727903099098,"stop":1727903099099,"duration":1}},{"uid":"cef6b4c6ac302d36","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22162//#testresult/cef6b4c6ac302d36","status":"passed","time":{"start":1727902806228,"stop":1727902806229,"duration":1}},{"uid":"7cedb3cface4d409","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22159//#testresult/7cedb3cface4d409","status":"passed","time":{"start":1727900233864,"stop":1727900233864,"duration":0}},{"uid":"f0f4cbb4ac394107","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22156//#testresult/f0f4cbb4ac394107","status":"passed","time":{"start":1727889316611,"stop":1727889316611,"duration":0}},{"uid":"89662aba1c8fc902","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22153//#testresult/89662aba1c8fc902","status":"passed","time":{"start":1727887116786,"stop":1727887116787,"duration":1}},{"uid":"da8075f403c723ab","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22154//#testresult/da8075f403c723ab","status":"passed","time":{"start":1727887095093,"stop":1727887095094,"duration":1}},{"uid":"45f65b244aa8f9c1","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22151//#testresult/45f65b244aa8f9c1","status":"passed","time":{"start":1727875115515,"stop":1727875115515,"duration":0}},{"uid":"6c6c6ee93ca720d0","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22150//#testresult/6c6c6ee93ca720d0","status":"passed","time":{"start":1727827137281,"stop":1727827137282,"duration":1}},{"uid":"5f6e5ac9520e6433","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22148//#testresult/5f6e5ac9520e6433","status":"passed","time":{"start":1727819953136,"stop":1727819953137,"duration":1}},{"uid":"8cdebb83cba85017","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22146//#testresult/8cdebb83cba85017","status":"passed","time":{"start":1727817399122,"stop":1727817399122,"duration":0}},{"uid":"5aa4c0c96b2d5b65","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22143//#testresult/5aa4c0c96b2d5b65","status":"passed","time":{"start":1727811946278,"stop":1727811946278,"duration":0}},{"uid":"ac7e9055d2c70ed2","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22141//#testresult/ac7e9055d2c70ed2","status":"passed","time":{"start":1727809619099,"stop":1727809619100,"duration":1}},{"uid":"3b3e02af63fbf20e","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22139//#testresult/3b3e02af63fbf20e","status":"passed","time":{"start":1727807114734,"stop":1727807114735,"duration":1}}]},"tags":[]},"source":"3668587761f134b7.json","parameterValues":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 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\ No newline at end of file diff --git a/22178/data/test-cases/3c382e56553c65b2.json b/22178/data/test-cases/3c382e56553c65b2.json deleted file mode 100644 index fb1e3386cad7..000000000000 --- a/22178/data/test-cases/3c382e56553c65b2.json +++ /dev/null @@ -1 +0,0 @@ -{"uid":"3c382e56553c65b2","name":"test__rollup[no_compare_dim_all_tissues_have_all_cell_types_except_root_cell_type-input_cell_counts_df5-expected_cell_counts_df5-input_gene_expr_df5-expected_gene_expr_df5]","fullName":"tests.unit.backend.wmg.api.common.test_rollup#test__rollup","historyId":"5e7c3babaa5f3f4466cb1a158c93146e","time":{"start":1727969458107,"stop":1727969458126,"duration":19},"description":"\n Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\n values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\n grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ).\n\n The input:\n\n 1. A cell type ontology subgraph consisting of 4 cell types.\n\n CL:0000127\n ├── CL:0000644\n ├── CL:0002605\n └── CL:0002627\n\n 2. A gene expression dataframe consisting of expression numeric values for each\n (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\n This value is held in a column called `n_cells_tissue`.\n 6. A cell counts dataframe that consists of cell counts for each\n (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 7. We set the `n_cells_tissue` column values to 1000 for all rows\n in the gene expression dataframe.\n 8. We set all other numeric column values to `1` in the gene expression dataframe.\n\n The expected output:\n\n 1. A rolled up gene expression dataframe.\n 2. A rolled up cell counts dataframe.\n 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\n does not change for all rows because it should not be rolled up the cell type ontology\n ancestor paths.\n 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\n in the rolled up gene expression dataframe hold the correct rolled up values.\n 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\n rolled up values.\n ","descriptionHtml":"
Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\nvalues FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\ngrouped by (tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>).\n\nThe input:\n\n1. A cell type ontology subgraph consisting of 4 cell types.\n\nCL:0000127\n├── CL:0000644\n├── CL:0002605\n└── CL:0002627\n\n2. A gene expression dataframe consisting of expression numeric values for each\n(gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\nThis value is held in a column called `n_cells_tissue`.\n6. A cell counts dataframe that consists of cell counts for each\n(tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n7. We set the `n_cells_tissue` column values to 1000 for all rows\nin the gene expression dataframe.\n8. We set all other numeric column values to `1` in the gene expression dataframe.\n\nThe expected output:\n\n1. A rolled up gene expression dataframe.\n2. A rolled up cell counts dataframe.\n3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\ndoes not change for all rows because it should not be rolled up the cell type ontology\nancestor paths.\n4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\nin the rolled up gene expression dataframe hold the correct rolled up values.\n5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\nrolled up values.\n
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\ No newline at end of file diff --git a/22178/data/test-cases/6764a3b539ab277c.json b/22178/data/test-cases/6764a3b539ab277c.json deleted file mode 100644 index aa335ee9450c..000000000000 --- a/22178/data/test-cases/6764a3b539ab277c.json +++ /dev/null @@ -1 +0,0 @@ -{"uid":"6764a3b539ab277c","name":"test__rollup[no_compare_dim_all_tissues_have_all_cell_types-input_cell_counts_df0-expected_cell_counts_df0-input_gene_expr_df0-expected_gene_expr_df0]","fullName":"tests.unit.backend.wmg.api.common.test_rollup#test__rollup","historyId":"f8f8ae804e63395ddf252e5ce0694c9b","time":{"start":1727969457781,"stop":1727969457820,"duration":39},"description":"\n Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\n values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\n grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ).\n\n The input:\n\n 1. A cell type ontology subgraph consisting of 4 cell types.\n\n CL:0000127\n ├── CL:0000644\n ├── CL:0002605\n └── CL:0002627\n\n 2. A gene expression dataframe consisting of expression numeric values for each\n (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\n This value is held in a column called `n_cells_tissue`.\n 6. A cell counts dataframe that consists of cell counts for each\n (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 7. We set the `n_cells_tissue` column values to 1000 for all rows\n in the gene expression dataframe.\n 8. We set all other numeric column values to `1` in the gene expression dataframe.\n\n The expected output:\n\n 1. A rolled up gene expression dataframe.\n 2. A rolled up cell counts dataframe.\n 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\n does not change for all rows because it should not be rolled up the cell type ontology\n ancestor paths.\n 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\n in the rolled up gene expression dataframe hold the correct rolled up values.\n 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\n rolled up values.\n ","descriptionHtml":"
Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\nvalues FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\ngrouped by (tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>).\n\nThe input:\n\n1. A cell type ontology subgraph consisting of 4 cell types.\n\nCL:0000127\n├── CL:0000644\n├── CL:0002605\n└── CL:0002627\n\n2. A gene expression dataframe consisting of expression numeric values for each\n(gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\nThis value is held in a column called `n_cells_tissue`.\n6. A cell counts dataframe that consists of cell counts for each\n(tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n7. We set the `n_cells_tissue` column values to 1000 for all rows\nin the gene expression dataframe.\n8. We set all other numeric column values to `1` in the gene expression dataframe.\n\nThe expected output:\n\n1. A rolled up gene expression dataframe.\n2. A rolled up cell counts dataframe.\n3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\ndoes not change for all rows because it should not be rolled up the cell type ontology\nancestor paths.\n4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\nin the rolled up gene expression dataframe hold the correct rolled up values.\n5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\nrolled up values.\n
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\ No newline at end of file diff --git a/22178/data/test-cases/7fdc539ff7e45e89.json b/22178/data/test-cases/7fdc539ff7e45e89.json deleted file mode 100644 index 26f69fb0e5e8..000000000000 --- a/22178/data/test-cases/7fdc539ff7e45e89.json +++ /dev/null @@ -1 +0,0 @@ -{"uid":"7fdc539ff7e45e89","name":"test__rollup[no_compare_dim_one_of_the_tissues_has_no_gene_expressions_at_all-input_cell_counts_df3-expected_cell_counts_df3-input_gene_expr_df3-expected_gene_expr_df3]","fullName":"tests.unit.backend.wmg.api.common.test_rollup#test__rollup","historyId":"31b9ca75c80d7f71de070fae47c3e8e4","time":{"start":1727969457980,"stop":1727969457999,"duration":19},"description":"\n Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\n values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\n grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ).\n\n The input:\n\n 1. A cell type ontology subgraph consisting of 4 cell types.\n\n CL:0000127\n ├── CL:0000644\n ├── CL:0002605\n └── CL:0002627\n\n 2. A gene expression dataframe consisting of expression numeric values for each\n (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\n This value is held in a column called `n_cells_tissue`.\n 6. A cell counts dataframe that consists of cell counts for each\n (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 7. We set the `n_cells_tissue` column values to 1000 for all rows\n in the gene expression dataframe.\n 8. We set all other numeric column values to `1` in the gene expression dataframe.\n\n The expected output:\n\n 1. A rolled up gene expression dataframe.\n 2. A rolled up cell counts dataframe.\n 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\n does not change for all rows because it should not be rolled up the cell type ontology\n ancestor paths.\n 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\n in the rolled up gene expression dataframe hold the correct rolled up values.\n 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\n rolled up values.\n ","descriptionHtml":"
Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\nvalues FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\ngrouped by (tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>).\n\nThe input:\n\n1. A cell type ontology subgraph consisting of 4 cell types.\n\nCL:0000127\n├── CL:0000644\n├── CL:0002605\n└── CL:0002627\n\n2. A gene expression dataframe consisting of expression numeric values for each\n(gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\nThis value is held in a column called `n_cells_tissue`.\n6. A cell counts dataframe that consists of cell counts for each\n(tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n7. We set the `n_cells_tissue` column values to 1000 for all rows\nin the gene expression dataframe.\n8. We set all other numeric column values to `1` in the gene expression dataframe.\n\nThe expected output:\n\n1. A rolled up gene expression dataframe.\n2. A rolled up cell counts dataframe.\n3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\ndoes not change for all rows because it should not be rolled up the cell type ontology\nancestor paths.\n4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\nin the rolled up gene expression dataframe hold the correct rolled up values.\n5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\nrolled up values.\n
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\ No newline at end of file diff --git a/22178/data/test-cases/99fc94beaef7163.json b/22178/data/test-cases/99fc94beaef7163.json deleted file mode 100644 index 81948e537e74..000000000000 --- a/22178/data/test-cases/99fc94beaef7163.json +++ /dev/null @@ -1 +0,0 @@ -{"uid":"99fc94beaef7163","name":"test__rollup[no_compare_dim_gene_expressed_in_one_tissue_but_not_other-input_cell_counts_df2-expected_cell_counts_df2-input_gene_expr_df2-expected_gene_expr_df2]","fullName":"tests.unit.backend.wmg.api.common.test_rollup#test__rollup","historyId":"8829462a338d361e56853010e16ef7d1","time":{"start":1727969457921,"stop":1727969457940,"duration":19},"description":"\n Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\n values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\n grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ).\n\n The input:\n\n 1. A cell type ontology subgraph consisting of 4 cell types.\n\n CL:0000127\n ├── CL:0000644\n ├── CL:0002605\n └── CL:0002627\n\n 2. A gene expression dataframe consisting of expression numeric values for each\n (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\n This value is held in a column called `n_cells_tissue`.\n 6. A cell counts dataframe that consists of cell counts for each\n (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 7. We set the `n_cells_tissue` column values to 1000 for all rows\n in the gene expression dataframe.\n 8. We set all other numeric column values to `1` in the gene expression dataframe.\n\n The expected output:\n\n 1. A rolled up gene expression dataframe.\n 2. A rolled up cell counts dataframe.\n 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\n does not change for all rows because it should not be rolled up the cell type ontology\n ancestor paths.\n 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\n in the rolled up gene expression dataframe hold the correct rolled up values.\n 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\n rolled up values.\n ","descriptionHtml":"
Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\nvalues FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\ngrouped by (tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>).\n\nThe input:\n\n1. A cell type ontology subgraph consisting of 4 cell types.\n\nCL:0000127\n├── CL:0000644\n├── CL:0002605\n└── CL:0002627\n\n2. A gene expression dataframe consisting of expression numeric values for each\n(gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\nThis value is held in a column called `n_cells_tissue`.\n6. A cell counts dataframe that consists of cell counts for each\n(tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n7. We set the `n_cells_tissue` column values to 1000 for all rows\nin the gene expression dataframe.\n8. We set all other numeric column values to `1` in the gene expression dataframe.\n\nThe expected output:\n\n1. A rolled up gene expression dataframe.\n2. A rolled up cell counts dataframe.\n3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\ndoes not change for all rows because it should not be rolled up the cell type ontology\nancestor paths.\n4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\nin the rolled up gene expression dataframe hold the correct rolled up values.\n5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\nrolled up values.\n
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CL:0002605 80\n CL:0002627 90\nUBERON:0002113 CL:0000127 540\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90"},{"name":"expected_gene_expr_df","value":" gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000169429 ... 1000\n2 ENSG00000085265 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000169429 ... 1000\n5 ENSG00000085265 ... 1000\n6 ENSG00000085265 ... 1000\n7 ENSG00000085265 ... 1000\n\n[8 rows x 7 columns]"},{"name":"input_cell_counts_df","value":" n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id \nUBERON:0000955 CL:0000127 300\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90\nUBERON:0002113 CL:0000127 300\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90"},{"name":"input_gene_expr_df","value":" gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000085265 ... 1000\n2 ENSG00000169429 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000085265 ... 1000\n\n[5 rows x 7 columns]"},{"name":"name","value":"'no_compare_dim_gene_expressed_in_one_tissue_but_not_other'"}],"links":[],"hidden":false,"retry":false,"extra":{"severity":"normal","retries":[],"categories":[],"history":{"statistic":{"failed":0,"broken":0,"skipped":0,"passed":238,"unknown":0,"total":238},"items":[{"uid":"322f70e3c85d3261","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22176//#testresult/322f70e3c85d3261","status":"passed","time":{"start":1727969341984,"stop":1727969342004,"duration":20}},{"uid":"2b778979dad50b9d","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22175//#testresult/2b778979dad50b9d","status":"passed","time":{"start":1727963758903,"stop":1727963758923,"duration":20}},{"uid":"f4b015ea6f909412","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22174//#testresult/f4b015ea6f909412","status":"passed","time":{"start":1727962681582,"stop":1727962681608,"duration":26}},{"uid":"2d7a01e4aac73c4c","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22173//#testresult/2d7a01e4aac73c4c","status":"passed","time":{"start":1727962527159,"stop":1727962527182,"duration":23}},{"uid":"71d3fd2249007d96","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22171//#testresult/71d3fd2249007d96","status":"passed","time":{"start":1727914077564,"stop":1727914077598,"duration":34}},{"uid":"a884e9d8cc4dbe7b","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22169//#testresult/a884e9d8cc4dbe7b","status":"passed","time":{"start":1727909928073,"stop":1727909928093,"duration":20}},{"uid":"e810455a228df8d3","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22164//#testresult/e810455a228df8d3","status":"passed","time":{"start":1727903829030,"stop":1727903829052,"duration":22}},{"uid":"be6e11b74f370a57","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22163//#testresult/be6e11b74f370a57","status":"passed","time":{"start":1727902910721,"stop":1727902910741,"duration":20}},{"uid":"a022ec5501984707","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22162//#testresult/a022ec5501984707","status":"passed","time":{"start":1727902665559,"stop":1727902665579,"duration":20}},{"uid":"210c3c4aa1beca53","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22159//#testresult/210c3c4aa1beca53","status":"passed","time":{"start":1727900027190,"stop":1727900027211,"duration":21}},{"uid":"e189de15cfbabc5d","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22156//#testresult/e189de15cfbabc5d","status":"passed","time":{"start":1727889114404,"stop":1727889114425,"duration":21}},{"uid":"602e969967451556","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22153//#testresult/602e969967451556","status":"passed","time":{"start":1727886924480,"stop":1727886924500,"duration":20}},{"uid":"c85a61031ac8c438","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22154//#testresult/c85a61031ac8c438","status":"passed","time":{"start":1727886921962,"stop":1727886921983,"duration":21}},{"uid":"6a232ae44436212d","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22151//#testresult/6a232ae44436212d","status":"passed","time":{"start":1727874938886,"stop":1727874938911,"duration":25}},{"uid":"5b46b5bf9ea064bf","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22150//#testresult/5b46b5bf9ea064bf","status":"passed","time":{"start":1727826936565,"stop":1727826936584,"duration":19}},{"uid":"19e1998185e58a0","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22148//#testresult/19e1998185e58a0","status":"passed","time":{"start":1727819775705,"stop":1727819775724,"duration":19}},{"uid":"4406b311fd6058c3","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22146//#testresult/4406b311fd6058c3","status":"passed","time":{"start":1727817220559,"stop":1727817220578,"duration":19}},{"uid":"476784752f955c0d","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22143//#testresult/476784752f955c0d","status":"passed","time":{"start":1727811775804,"stop":1727811775824,"duration":20}},{"uid":"5c04024e90f2bda1","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22141//#testresult/5c04024e90f2bda1","status":"passed","time":{"start":1727809429773,"stop":1727809429795,"duration":22}},{"uid":"acd182a049e441c0","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22139//#testresult/acd182a049e441c0","status":"passed","time":{"start":1727806925249,"stop":1727806925277,"duration":28}}]},"tags":[]},"source":"99fc94beaef7163.json","parameterValues":[" n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id \nUBERON:0000955 CL:0000127 540\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90\nUBERON:0002113 CL:0000127 540\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90"," gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000169429 ... 1000\n2 ENSG00000085265 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000169429 ... 1000\n5 ENSG00000085265 ... 1000\n6 ENSG00000085265 ... 1000\n7 ENSG00000085265 ... 1000\n\n[8 rows x 7 columns]"," n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id \nUBERON:0000955 CL:0000127 300\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90\nUBERON:0002113 CL:0000127 300\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90"," gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000085265 ... 1000\n2 ENSG00000169429 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000085265 ... 1000\n\n[5 rows x 7 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array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999]), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"}],"links":[],"hidden":false,"retry":false,"extra":{"severity":"normal","retries":[],"categories":[],"history":{"statistic":{"failed":0,"broken":0,"skipped":0,"passed":238,"unknown":0,"total":238},"items":[{"uid":"1e6b87012c99e773","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22176//#testresult/1e6b87012c99e773","status":"passed","time":{"start":1727969518100,"stop":1727969518100,"duration":0}},{"uid":"e427eb4e5c88f0e6","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22175//#testresult/e427eb4e5c88f0e6","status":"passed","time":{"start":1727963911473,"stop":1727963911473,"duration":0}},{"uid":"80c408bb26e8d805","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22174//#testresult/80c408bb26e8d805","status":"passed","time":{"start":1727962889039,"stop":1727962889039,"duration":0}},{"uid":"f0c4e1b0bfa73867","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22173//#testresult/f0c4e1b0bfa73867","status":"passed","time":{"start":1727962691402,"stop":1727962691402,"duration":0}},{"uid":"585a6bbcb22329e","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22171//#testresult/585a6bbcb22329e","status":"passed","time":{"start":1727914284501,"stop":1727914284502,"duration":1}},{"uid":"87b50a7d4aa77c4e","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22169//#testresult/87b50a7d4aa77c4e","status":"passed","time":{"start":1727910100332,"stop":1727910100332,"duration":0}},{"uid":"fe766e046d7a0965","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22164//#testresult/fe766e046d7a0965","status":"passed","time":{"start":1727904039309,"stop":1727904039309,"duration":0}},{"uid":"e8a2716260cabcf9","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22163//#testresult/e8a2716260cabcf9","status":"passed","time":{"start":1727903099079,"stop":1727903099080,"duration":1}},{"uid":"bf5d74c0d253892a","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22162//#testresult/bf5d74c0d253892a","status":"passed","time":{"start":1727902806208,"stop":1727902806208,"duration":0}},{"uid":"300e236d5163227a","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22159//#testresult/300e236d5163227a","status":"passed","time":{"start":1727900233845,"stop":1727900233845,"duration":0}},{"uid":"b2439ee4b2f75fe6","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22156//#testresult/b2439ee4b2f75fe6","status":"passed","time":{"start":1727889316592,"stop":1727889316592,"duration":0}},{"uid":"f1170d42309549e0","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22153//#testresult/f1170d42309549e0","status":"passed","time":{"start":1727887116767,"stop":1727887116768,"duration":1}},{"uid":"dac7106a174b0f3d","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22154//#testresult/dac7106a174b0f3d","status":"passed","time":{"start":1727887095074,"stop":1727887095074,"duration":0}},{"uid":"6d751208aec1fc94","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22151//#testresult/6d751208aec1fc94","status":"passed","time":{"start":1727875115495,"stop":1727875115496,"duration":1}},{"uid":"936775459282998e","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22150//#testresult/936775459282998e","status":"passed","time":{"start":1727827137259,"stop":1727827137259,"duration":0}},{"uid":"dd1240e9d0bcd25c","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22148//#testresult/dd1240e9d0bcd25c","status":"passed","time":{"start":1727819953117,"stop":1727819953117,"duration":0}},{"uid":"30b8d209b75b5e5a","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22146//#testresult/30b8d209b75b5e5a","status":"passed","time":{"start":1727817399103,"stop":1727817399103,"duration":0}},{"uid":"454356d09b36a431","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22143//#testresult/454356d09b36a431","status":"passed","time":{"start":1727811946259,"stop":1727811946259,"duration":0}},{"uid":"30c6c9ab64526f9c","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22141//#testresult/30c6c9ab64526f9c","status":"passed","time":{"start":1727809619080,"stop":1727809619080,"duration":0}},{"uid":"9f5a30119b200998","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22139//#testresult/9f5a30119b200998","status":"passed","time":{"start":1727807114715,"stop":1727807114716,"duration":1}}]},"tags":[]},"source":"a606cb1992dc0d8c.json","parameterValues":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 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796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999]), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"]} \ No newline at end of file diff --git a/22178/data/test-cases/a643e374c09824ec.json b/22178/data/test-cases/a643e374c09824ec.json deleted file mode 100644 index c6960ad188bd..000000000000 --- a/22178/data/test-cases/a643e374c09824ec.json +++ /dev/null @@ -1 +0,0 @@ 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214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 0, 1, 2, 3,\n 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16,\n 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29,\n 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42,\n 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55,\n 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68,\n 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,\n 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94,\n 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107,\n 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120,\n 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133,\n 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146,\n 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159,\n 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172,\n 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, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': None}"]} \ No newline at end of file diff --git a/22178/data/test-cases/fc682e7686be8660.json b/22178/data/test-cases/fc682e7686be8660.json deleted file mode 100644 index 26d6f8c7589a..000000000000 --- a/22178/data/test-cases/fc682e7686be8660.json +++ /dev/null @@ -1 +0,0 @@ -{"uid":"fc682e7686be8660","name":"test__rollup[no_compare_dim_one_ancestor_cell_type_missing_in_one_tissue_but_exists_in_all_others-input_cell_counts_df1-expected_cell_counts_df1-input_gene_expr_df1-expected_gene_expr_df1]","fullName":"tests.unit.backend.wmg.api.common.test_rollup#test__rollup","historyId":"4f34d24473a3e97e04a717c5f4435ddc","time":{"start":1727969457861,"stop":1727969457880,"duration":19},"description":"\n Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\n values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\n grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ).\n\n The input:\n\n 1. A cell type ontology subgraph consisting of 4 cell types.\n\n CL:0000127\n ├── CL:0000644\n ├── CL:0002605\n └── CL:0002627\n\n 2. A gene expression dataframe consisting of expression numeric values for each\n (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\n This value is held in a column called `n_cells_tissue`.\n 6. A cell counts dataframe that consists of cell counts for each\n (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 7. We set the `n_cells_tissue` column values to 1000 for all rows\n in the gene expression dataframe.\n 8. We set all other numeric column values to `1` in the gene expression dataframe.\n\n The expected output:\n\n 1. A rolled up gene expression dataframe.\n 2. A rolled up cell counts dataframe.\n 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\n does not change for all rows because it should not be rolled up the cell type ontology\n ancestor paths.\n 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\n in the rolled up gene expression dataframe hold the correct rolled up values.\n 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\n rolled up values.\n ","descriptionHtml":"
Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\nvalues FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\ngrouped by (tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>).\n\nThe input:\n\n1. A cell type ontology subgraph consisting of 4 cell types.\n\nCL:0000127\n├── CL:0000644\n├── CL:0002605\n└── CL:0002627\n\n2. A gene expression dataframe consisting of expression numeric values for each\n(gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\nThis value is held in a column called `n_cells_tissue`.\n6. A cell counts dataframe that consists of cell counts for each\n(tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n7. We set the `n_cells_tissue` column values to 1000 for all rows\nin the gene expression dataframe.\n8. We set all other numeric column values to `1` in the gene expression dataframe.\n\nThe expected output:\n\n1. A rolled up gene expression dataframe.\n2. A rolled up cell counts dataframe.\n3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\ndoes not change for all rows because it should not be rolled up the cell type ontology\nancestor paths.\n4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\nin the rolled up gene expression dataframe hold the correct rolled up values.\n5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\nrolled up values.\n
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CL:0002605 80\n CL:0002627 90\nUBERON:0002113 CL:0000127 540\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90"},{"name":"expected_gene_expr_df","value":" gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000169429 ... 1000\n2 ENSG00000085265 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000169429 ... 1000\n5 ENSG00000085265 ... 1000\n6 ENSG00000169429 ... 1000\n7 ENSG00000085265 ... 1000\n8 ENSG00000085265 ... 1000\n9 ENSG00000169429 ... 1000\n\n[10 rows x 7 columns]"},{"name":"input_cell_counts_df","value":" n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id \nUBERON:0000955 CL:0000644 70\n CL:0002605 80\n CL:0002627 90\nUBERON:0002113 CL:0000127 300\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90"},{"name":"input_gene_expr_df","value":" gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000085265 ... 1000\n2 ENSG00000169429 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000085265 ... 1000\n5 ENSG00000169429 ... 1000\n\n[6 rows x 7 columns]"},{"name":"name","value":"'no_compare_dim_one_ancestor_cell_type_missing_in_one_tissue_but_exists_in_all_others'"}],"links":[],"hidden":false,"retry":false,"extra":{"severity":"normal","retries":[],"categories":[],"history":{"statistic":{"failed":0,"broken":0,"skipped":0,"passed":238,"unknown":0,"total":238},"items":[{"uid":"a1d537cfc2353101","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22176//#testresult/a1d537cfc2353101","status":"passed","time":{"start":1727969341924,"stop":1727969341944,"duration":20}},{"uid":"1ac7bbdd2b6a1ee5","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22175//#testresult/1ac7bbdd2b6a1ee5","status":"passed","time":{"start":1727963758838,"stop":1727963758859,"duration":21}},{"uid":"13dc96cfc46e04a9","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22174//#testresult/13dc96cfc46e04a9","status":"passed","time":{"start":1727962681485,"stop":1727962681520,"duration":35}},{"uid":"318c80b1cf1e2bd7","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22173//#testresult/318c80b1cf1e2bd7","status":"passed","time":{"start":1727962527099,"stop":1727962527118,"duration":19}},{"uid":"b53f50d2728e51aa","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22171//#testresult/b53f50d2728e51aa","status":"passed","time":{"start":1727914077458,"stop":1727914077492,"duration":34}},{"uid":"d474587a69ac440e","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22169//#testresult/d474587a69ac440e","status":"passed","time":{"start":1727909928011,"stop":1727909928030,"duration":19}},{"uid":"94d285732ae23e4e","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22164//#testresult/94d285732ae23e4e","status":"passed","time":{"start":1727903828969,"stop":1727903828987,"duration":18}},{"uid":"7e3e4bf959fb7b9a","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22163//#testresult/7e3e4bf959fb7b9a","status":"passed","time":{"start":1727902910648,"stop":1727902910669,"duration":21}},{"uid":"59cc709fdf88aca7","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22162//#testresult/59cc709fdf88aca7","status":"passed","time":{"start":1727902665497,"stop":1727902665517,"duration":20}},{"uid":"d19659d8a497c53a","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22159//#testresult/d19659d8a497c53a","status":"passed","time":{"start":1727900027128,"stop":1727900027148,"duration":20}},{"uid":"762d0fd87a9b102f","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22156//#testresult/762d0fd87a9b102f","status":"passed","time":{"start":1727889114338,"stop":1727889114359,"duration":21}},{"uid":"974d55bde708fa35","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22153//#testresult/974d55bde708fa35","status":"passed","time":{"start":1727886924413,"stop":1727886924437,"duration":24}},{"uid":"decf883f22b6825a","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22154//#testresult/decf883f22b6825a","status":"passed","time":{"start":1727886921903,"stop":1727886921922,"duration":19}},{"uid":"6cee759eb47e0db3","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22151//#testresult/6cee759eb47e0db3","status":"passed","time":{"start":1727874938793,"stop":1727874938823,"duration":30}},{"uid":"c173c09f6f4445e7","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22150//#testresult/c173c09f6f4445e7","status":"passed","time":{"start":1727826936504,"stop":1727826936524,"duration":20}},{"uid":"ca221117e1709606","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22148//#testresult/ca221117e1709606","status":"passed","time":{"start":1727819775645,"stop":1727819775664,"duration":19}},{"uid":"897b3db2c0fae37f","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22146//#testresult/897b3db2c0fae37f","status":"passed","time":{"start":1727817220501,"stop":1727817220519,"duration":18}},{"uid":"cf3e6a52e7c14c53","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22143//#testresult/cf3e6a52e7c14c53","status":"passed","time":{"start":1727811775743,"stop":1727811775762,"duration":19}},{"uid":"59f95b4211418aed","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22141//#testresult/59f95b4211418aed","status":"passed","time":{"start":1727809429708,"stop":1727809429729,"duration":21}},{"uid":"822b499b44d200bc","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22139//#testresult/822b499b44d200bc","status":"passed","time":{"start":1727806925172,"stop":1727806925196,"duration":24}}]},"tags":[]},"source":"fc682e7686be8660.json","parameterValues":[" 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\ No newline at end of file diff --git a/22178/data/test-cases/ffa83cc7224d25a4.json b/22178/data/test-cases/ffa83cc7224d25a4.json deleted file mode 100644 index f818f9b4df29..000000000000 --- a/22178/data/test-cases/ffa83cc7224d25a4.json +++ /dev/null @@ -1 +0,0 @@ -{"uid":"ffa83cc7224d25a4","name":"test__rollup[with_ethnicity_compare_dim_on_single_tissue-input_cell_counts_df4-expected_cell_counts_df4-input_gene_expr_df4-expected_gene_expr_df4]","fullName":"tests.unit.backend.wmg.api.common.test_rollup#test__rollup","historyId":"cea2ec9c99b35378700fac487d392abf","time":{"start":1727969458043,"stop":1727969458064,"duration":21},"description":"\n Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\n values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\n grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ).\n\n The input:\n\n 1. A cell type ontology subgraph consisting of 4 cell types.\n\n CL:0000127\n ├── CL:0000644\n ├── CL:0002605\n └── CL:0002627\n\n 2. A gene expression dataframe consisting of expression numeric values for each\n (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\n This value is held in a column called `n_cells_tissue`.\n 6. A cell counts dataframe that consists of cell counts for each\n (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 7. We set the `n_cells_tissue` column values to 1000 for all rows\n in the gene expression dataframe.\n 8. We set all other numeric column values to `1` in the gene expression dataframe.\n\n The expected output:\n\n 1. A rolled up gene expression dataframe.\n 2. A rolled up cell counts dataframe.\n 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\n does not change for all rows because it should not be rolled up the cell type ontology\n ancestor paths.\n 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\n in the rolled up gene expression dataframe hold the correct rolled up values.\n 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\n rolled up values.\n ","descriptionHtml":"
Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\nvalues FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\ngrouped by (tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>).\n\nThe input:\n\n1. A cell type ontology subgraph consisting of 4 cell types.\n\nCL:0000127\n├── CL:0000644\n├── CL:0002605\n└── CL:0002627\n\n2. A gene expression dataframe consisting of expression numeric values for each\n(gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\nThis value is held in a column called `n_cells_tissue`.\n6. A cell counts dataframe that consists of cell counts for each\n(tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n7. We set the `n_cells_tissue` column values to 1000 for all rows\nin the gene expression dataframe.\n8. We set all other numeric column values to `1` in the gene expression dataframe.\n\nThe expected output:\n\n1. A rolled up gene expression dataframe.\n2. A rolled up cell counts dataframe.\n3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\ndoes not change for all rows because it should not be rolled up the cell type ontology\nancestor paths.\n4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\nin the rolled up gene expression dataframe hold the correct rolled up values.\n5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\nrolled up values.\n
\n","status":"passed","flaky":false,"newFailed":false,"newBroken":false,"newPassed":false,"retriesCount":0,"retriesStatusChange":false,"beforeStages":[{"name":"patch_all","time":{"start":1727969455097,"stop":1727969455098,"duration":1},"status":"passed","steps":[],"attachments":[],"parameters":[],"shouldDisplayMessage":false,"stepsCount":0,"attachmentsCount":0,"hasContent":false,"attachmentStep":false}],"testStage":{"description":"\n Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\n values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\n grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ).\n\n The input:\n\n 1. A cell type ontology subgraph consisting of 4 cell types.\n\n CL:0000127\n ├── CL:0000644\n ├── CL:0002605\n └── CL:0002627\n\n 2. A gene expression dataframe consisting of expression numeric values for each\n (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\n This value is held in a column called `n_cells_tissue`.\n 6. A cell counts dataframe that consists of cell counts for each\n (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 7. We set the `n_cells_tissue` column values to 1000 for all rows\n in the gene expression dataframe.\n 8. We set all other numeric column values to `1` in the gene expression dataframe.\n\n The expected output:\n\n 1. A rolled up gene expression dataframe.\n 2. A rolled up cell counts dataframe.\n 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\n does not change for all rows because it should not be rolled up the cell type ontology\n ancestor paths.\n 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\n in the rolled up gene expression dataframe hold the correct rolled up values.\n 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\n rolled up values.\n ","status":"passed","steps":[],"attachments":[{"uid":"85d51bf7acc634bd","name":"log","source":"85d51bf7acc634bd.txt","type":"text/plain","size":230}],"parameters":[],"shouldDisplayMessage":false,"stepsCount":0,"attachmentsCount":1,"hasContent":true,"attachmentStep":false},"afterStages":[],"labels":[{"name":"parentSuite","value":"tests.unit.backend.wmg.api.common"},{"name":"suite","value":"test_rollup"},{"name":"host","value":"12bb8e14ad85"},{"name":"thread","value":"1-MainThread"},{"name":"framework","value":"pytest"},{"name":"language","value":"cpython3"},{"name":"package","value":"tests.unit.backend.wmg.api.common.test_rollup"},{"name":"resultFormat","value":"allure2"}],"parameters":[{"name":"expected_cell_counts_df","value":" n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id self_reported_ethnicity_ontology_term_id \nUBERON:0000955 CL:0000127 HANCESTRO:0008 50\n multiethnic 70\n unknown 410\n CL:0000644 unknown 70\n CL:0002605 HANCESTRO:0005 10\n HANCESTRO:0008 30\n multiethnic 40\n CL:0002627 HANCESTRO:0006 10\n HANCESTRO:0008 20\n multiethnic 30\n unknown 40"},{"name":"expected_gene_expr_df","value":" gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000085265 ... 1000\n2 ENSG00000169429 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000085265 ... 1000\n5 ENSG00000085265 ... 1000\n6 ENSG00000085265 ... 1000\n7 ENSG00000085265 ... 1000\n8 ENSG00000169429 ... 1000\n\n[9 rows x 8 columns]"},{"name":"input_cell_counts_df","value":" n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id self_reported_ethnicity_ontology_term_id \nUBERON:0000955 CL:0000127 unknown 300\n CL:0000644 unknown 70\n CL:0002605 HANCESTRO:0005 10\n HANCESTRO:0008 30\n multiethnic 40\n CL:0002627 HANCESTRO:0006 10\n HANCESTRO:0008 20\n multiethnic 30\n unknown 40"},{"name":"input_gene_expr_df","value":" gene_ontology_term_id 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n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id self_reported_ethnicity_ontology_term_id \nUBERON:0000955 CL:0000127 HANCESTRO:0008 50\n multiethnic 70\n unknown 410\n CL:0000644 unknown 70\n CL:0002605 HANCESTRO:0005 10\n HANCESTRO:0008 30\n multiethnic 40\n CL:0002627 HANCESTRO:0006 10\n HANCESTRO:0008 20\n multiethnic 30\n unknown 40"," gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000085265 ... 1000\n2 ENSG00000169429 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000085265 ... 1000\n5 ENSG00000085265 ... 1000\n6 ENSG00000085265 ... 1000\n7 ENSG00000085265 ... 1000\n8 ENSG00000169429 ... 1000\n\n[9 rows x 8 columns]"," n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id self_reported_ethnicity_ontology_term_id \nUBERON:0000955 CL:0000127 unknown 300\n CL:0000644 unknown 70\n CL:0002605 HANCESTRO:0005 10\n HANCESTRO:0008 30\n multiethnic 40\n CL:0002627 HANCESTRO:0006 10\n HANCESTRO:0008 20\n multiethnic 30\n unknown 40"," gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000085265 ... 1000\n2 ENSG00000085265 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000169429 ... 1000\n\n[5 rows x 8 columns]","'with_ethnicity_compare_dim_on_single_tissue'"]} \ No newline at end of file diff --git a/22178/data/test-cases/ffcd2c29daa05be6.json b/22178/data/test-cases/ffcd2c29daa05be6.json deleted file mode 100644 index fdc0589f163c..000000000000 --- a/22178/data/test-cases/ffcd2c29daa05be6.json +++ /dev/null @@ -1 +0,0 @@ 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144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 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726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 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797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 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array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test__upload_update_by_dataset_canonical_id__OK","uid":"3c26d5c9e65973c8","parentUid":"6990826a8455854f5c54d7395e4e44c2","status":"passed","time":{"start":1727969596132,"stop":1727969596135,"duration":3},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test_type_inference[parameters30]","uid":"3668587761f134b7","parentUid":"6990826a8455854f5c54d7395e4e44c2","status":"passed","time":{"start":1727969647906,"stop":1727969647906,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 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processing status +Traceback (most recent call last): + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 199, in _new_conn + sock = connection.create_connection( + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py", line 60, in create_connection + for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM): + File "/usr/lib/python3.10/socket.py", line 967, in getaddrinfo + for res in _socket.getaddrinfo(host, port, family, type, proto, flags): +socket.gaierror: [Errno -3] Temporary failure in name resolution + +The above exception was the direct cause of the following exception: + +Traceback (most recent call last): + File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 464, in send + urllib_response = conn.urlopen( + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 843, in urlopen + retries = retries.increment( + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py", line 449, in increment + raise reraise(type(error), error, _stacktrace) + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py", line 39, in reraise + raise value + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 789, in urlopen + response = self._make_request( + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 495, in _make_request + conn.request( + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 96, in request + rval = super().request(method, url, body, headers, *args, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 441, in request + self.endheaders() + File "/usr/lib/python3.10/http/client.py", line 1278, in endheaders + self._send_output(message_body, encode_chunked=encode_chunked) + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 123, in _send_output + self.send(msg) + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 223, in send + return super().send(str) + File "/usr/lib/python3.10/http/client.py", line 976, in send + self.connect() + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 279, in connect + self.sock = self._new_conn() + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 206, in _new_conn + raise NameResolutionError(self.host, self, e) from e +urllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution) + +During handling of the above exception, another exception occurred: + +Traceback (most recent call last): + File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 87, in update_dataset_processing_status_to_failed + get_business_logic().update_dataset_version_status( + File "/single-cell-data-portal/backend/portal/api/providers.py", line 18, in get_business_logic + DatabaseProvider(), + File "/single-cell-data-portal/backend/layers/persistence/persistence.py", line 57, in __init__ + database_uri = CorporaDbConfig().database_uri + File "/single-cell-data-portal/backend/common/utils/secret_config.py", line 54, in __getattr__ + self.load() + File "/single-cell-data-portal/backend/common/utils/secret_config.py", line 88, in load + self.load_from_aws() + File "/single-cell-data-portal/backend/common/utils/secret_config.py", line 99, in load_from_aws + secret = AwsSecret(secret_path) + File "/single-cell-data-portal/backend/common/utils/aws.py", line 31, in __init__ + self._load() + File "/single-cell-data-portal/backend/common/utils/aws.py", line 76, in _load + response = self.secrets_mgr.describe_secret(SecretId=self.name) + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 569, in _api_call + return self._make_api_call(operation_name, kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1005, in _make_api_call + http, parsed_response = self._make_request( + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1029, in _make_request + return self._endpoint.make_request(operation_model, request_dict) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 119, in make_request + return self._send_request(request_dict, operation_model) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 200, in _send_request + while self._needs_retry( + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 360, in _needs_retry + responses = self._event_emitter.emit( + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 412, in emit + return self._emitter.emit(aliased_event_name, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 256, in emit + return self._emit(event_name, kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 239, in _emit + response = handler(**kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 207, in __call__ + if self._checker(**checker_kwargs): + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 284, in __call__ + should_retry = self._should_retry( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 320, in _should_retry + return self._checker(attempt_number, response, caught_exception) + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 363, in __call__ + checker_response = checker( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 247, in __call__ + return self._check_caught_exception( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 416, in _check_caught_exception + raise caught_exception + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 279, in _do_get_response + http_response = self._send(request) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 383, in _send + return self.http_session.send(request) + File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 493, in send + raise EndpointConnectionError(endpoint_url=request.url, error=e) +botocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: "http://localstack:4566/" +ERROR processing:logger.py:41 Failed to clean up artifacts. +Traceback (most recent call last): + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 199, in _new_conn + sock = connection.create_connection( + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py", line 60, in create_connection + for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM): + File "/usr/lib/python3.10/socket.py", line 967, in getaddrinfo + for res in _socket.getaddrinfo(host, port, family, type, proto, flags): +socket.gaierror: [Errno -3] Temporary failure in name resolution + +The above exception was the direct cause of the following exception: + +Traceback (most recent call last): + File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 464, in send + urllib_response = conn.urlopen( + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 843, in urlopen + retries = retries.increment( + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py", line 449, in increment + raise reraise(type(error), error, _stacktrace) + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py", line 39, in reraise + raise value + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 789, in urlopen + response = self._make_request( + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 495, in _make_request + conn.request( + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 96, in request + rval = super().request(method, url, body, headers, *args, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 441, in request + self.endheaders() + File "/usr/lib/python3.10/http/client.py", line 1278, in endheaders + self._send_output(message_body, encode_chunked=encode_chunked) + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 123, in _send_output + self.send(msg) + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 223, in send + return super().send(str) + File "/usr/lib/python3.10/http/client.py", line 976, in send + self.connect() + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 279, in connect + self.sock = self._new_conn() + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 206, in _new_conn + raise NameResolutionError(self.host, self, e) from e +urllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution) + +During handling of the above exception, another exception occurred: + +Traceback (most recent call last): + File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 192, in cleanup_artifacts + delete_many_from_s3(artifact_bucket, object_key + "/") + File "/single-cell-data-portal/backend/common/utils/aws.py", line 107, in delete_many_from_s3 + bucket.objects.filter(Prefix=f"{prefix}").delete() + File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 555, in batch_action + return action(self, *args, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py", line 134, in __call__ + for page in parent.pages(): + File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 169, in pages + for page in pages: + File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 269, in __iter__ + response = self._make_request(current_kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 357, in _make_request + return self._method(**current_kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 569, in _api_call + return self._make_api_call(operation_name, kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1005, in _make_api_call + http, parsed_response = self._make_request( + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1029, in _make_request + return self._endpoint.make_request(operation_model, request_dict) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 119, in make_request + return self._send_request(request_dict, operation_model) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 200, in _send_request + while self._needs_retry( + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 360, in _needs_retry + responses = self._event_emitter.emit( + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 412, in emit + return self._emitter.emit(aliased_event_name, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 256, in emit + return self._emit(event_name, kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 239, in _emit + response = handler(**kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 207, in __call__ + if self._checker(**checker_kwargs): + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 284, in __call__ + should_retry = self._should_retry( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 320, in _should_retry + return self._checker(attempt_number, response, caught_exception) + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 363, in __call__ + checker_response = checker( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 247, in __call__ + return self._check_caught_exception( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 416, in _check_caught_exception + raise caught_exception + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 279, in _do_get_response + http_response = self._send(request) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 383, in _send + return self.http_session.send(request) + File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 493, in send + raise EndpointConnectionError(endpoint_url=request.url, error=e) +botocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: "http://localstack:4566/artifact-bucket?prefix=123%2F&encoding-type=url" +ERROR processing:logger.py:41 Failed to clean up datasets. +Traceback (most recent call last): + File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 194, in cleanup_artifacts + datasets_bucket = os.environ["DATASETS_BUCKET"] + File "/usr/lib/python3.10/os.py", line 680, in __getitem__ + raise KeyError(key) from None +KeyError: 'DATASETS_BUCKET' +ERROR processing:logger.py:41 Failed to clean up cxgs. +Traceback (most recent call last): + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 199, in _new_conn + sock = connection.create_connection( + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py", line 60, in create_connection + for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM): + File "/usr/lib/python3.10/socket.py", line 967, in getaddrinfo + for res in _socket.getaddrinfo(host, port, family, type, proto, flags): +socket.gaierror: [Errno -3] Temporary failure in name resolution + +The above exception was the direct cause of the following exception: + +Traceback (most recent call last): + File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 464, in send + urllib_response = conn.urlopen( + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 843, in urlopen + retries = retries.increment( + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py", line 449, in increment + raise reraise(type(error), error, _stacktrace) + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py", line 39, in reraise + raise value + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 789, in urlopen + response = self._make_request( + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 495, in _make_request + conn.request( + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 96, in request + rval = super().request(method, url, body, headers, *args, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 441, in request + self.endheaders() + File "/usr/lib/python3.10/http/client.py", line 1278, in endheaders + self._send_output(message_body, encode_chunked=encode_chunked) + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 123, in _send_output + self.send(msg) + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 223, in send + return super().send(str) + File "/usr/lib/python3.10/http/client.py", line 976, in send + self.connect() + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 279, in connect + self.sock = self._new_conn() + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 206, in _new_conn + raise NameResolutionError(self.host, self, e) from e +urllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution) + +During handling of the above exception, another exception occurred: + +Traceback (most recent call last): + File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 198, in cleanup_artifacts + delete_many_from_s3(cellxgene_bucket, object_key + ".cxg/") + File "/single-cell-data-portal/backend/common/utils/aws.py", line 107, in delete_many_from_s3 + bucket.objects.filter(Prefix=f"{prefix}").delete() + File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 555, in batch_action + return action(self, *args, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py", line 134, in __call__ + for page in parent.pages(): + File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 169, in pages + for page in pages: + File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 269, in __iter__ + response = self._make_request(current_kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 357, in _make_request + return self._method(**current_kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 569, in _api_call + return self._make_api_call(operation_name, kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1005, in _make_api_call + http, parsed_response = self._make_request( + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1029, in _make_request + return self._endpoint.make_request(operation_model, request_dict) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 119, in make_request + return self._send_request(request_dict, operation_model) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 200, in _send_request + while self._needs_retry( + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 360, in _needs_retry + responses = self._event_emitter.emit( + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 412, in emit + return self._emitter.emit(aliased_event_name, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 256, in emit + return self._emit(event_name, kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 239, in _emit + response = handler(**kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 207, in __call__ + if self._checker(**checker_kwargs): + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 284, in __call__ + should_retry = self._should_retry( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 320, in _should_retry + return self._checker(attempt_number, response, caught_exception) + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 363, in __call__ + checker_response = checker( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 247, in __call__ + return self._check_caught_exception( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 416, in _check_caught_exception + raise caught_exception + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 279, in _do_get_response + http_response = self._send(request) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 383, in _send + return self.http_session.send(request) + File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 493, in send + raise EndpointConnectionError(endpoint_url=request.url, error=e) +botocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: "http://localstack:4566/cellxgene-bucket?prefix=123.cxg%2F&encoding-type=url" \ No newline at end of file diff --git a/22255/data/attachments/12f23334a2be67d.txt b/22255/data/attachments/12f23334a2be67d.txt new file mode 100644 index 000000000000..229631dd6230 --- /dev/null +++ b/22255/data/attachments/12f23334a2be67d.txt @@ -0,0 +1,2 @@ +{"levelname": "ERROR", "asctime": "2024-10-07T20:18:33.007Z", "name": "processing", "message": "Error in func", "lineno": 343, "pathname": "/single-cell-data-portal/backend/layers/processing/schema_migration.py", "exc_info": "Traceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/schema_migration.py\", line 341, in wrapper\n return func(*args, **kwargs)\n File \"/single-cell-data-portal/tests/unit/processing/schema_migration/test_error_wrapper.py\", line 13, in func\n raise Exception(\"error\")\nException: error", "input": {"args": [1], "kwargs": {"b": 2}}} +{"levelname": "INFO", "asctime": "2024-10-07T20:18:33.007Z", "name": "processing", "message": "Uploaded to S3", "lineno": 313, "pathname": "/single-cell-data-portal/backend/layers/processing/schema_migration.py", "file_name": "/tmp/pytest-of-root/pytest-0/test_error_wrapper0/test_file.json", "bucket": "artifact-bucket", "key": "schema_migration/test-execution-arn/report/errors//tmp/pytest-of-root/pytest-0/test_error_wrapper0/test_file.json"} diff --git a/22255/data/attachments/1323a86bc658164f.txt b/22255/data/attachments/1323a86bc658164f.txt new file mode 100644 index 000000000000..32bd73389387 --- /dev/null +++ b/22255/data/attachments/1323a86bc658164f.txt @@ -0,0 +1 @@ +{"levelname": "ERROR", "asctime": "2024-10-07T20:19:25.007Z", "name": "root", "message": "Collection collection123 not found", "lineno": 114, "pathname": "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py"} diff --git a/22178/data/attachments/56ec32f3c67bf9d6.txt b/22255/data/attachments/13adaee5daf8bf0e.txt similarity index 100% rename from 22178/data/attachments/56ec32f3c67bf9d6.txt rename to 22255/data/attachments/13adaee5daf8bf0e.txt diff --git a/22178/data/attachments/360ffd701af1c9ae.txt b/22255/data/attachments/14036413224a7af8.txt similarity index 100% rename from 22178/data/attachments/360ffd701af1c9ae.txt rename to 22255/data/attachments/14036413224a7af8.txt diff --git a/22255/data/attachments/143c29c1c6bbfd66.txt b/22255/data/attachments/143c29c1c6bbfd66.txt new file mode 100644 index 000000000000..9debf33671fd --- /dev/null +++ b/22255/data/attachments/143c29c1c6bbfd66.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "7bb2eb16-4cbb-43b6-9591-1221505b3f2d", "type": "REQUEST", "details": {"url": "/dp/v1/datasets/e305849e-d28c-4032-8872-816afd48b2cc", "method": "DELETE", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "7bb2eb16-4cbb-43b6-9591-1221505b3f2d", "type": "RESPONSE", "details": {"status_code": 403, "content_length": 97, "response_time": 0.0021660327911376953}} diff --git a/22255/data/attachments/14ce92807b35c3c9.txt b/22255/data/attachments/14ce92807b35c3c9.txt new file mode 100644 index 000000000000..341b3ea45875 --- /dev/null +++ b/22255/data/attachments/14ce92807b35c3c9.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "55741a0f-b44e-4768-8e9a-0ae64b5fe5a3", "type": "REQUEST", "details": {"url": "/dp/v1/collections/178641b6-2d36-40eb-bee8-9b00e4c436e5/order-datasets", "method": "PUT", "content_length": 94}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", 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+{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "8696461b-492c-4d0f-95ec-bee65e044e7d", "type": "RESPONSE", "details": {"status_code": 403, "content_length": 132, "response_time": 0.0028104782104492188}} diff --git a/22178/data/attachments/b07c1313d10c3b59.txt b/22255/data/attachments/2193faccd03cad3b.txt similarity index 100% rename from 22178/data/attachments/b07c1313d10c3b59.txt rename to 22255/data/attachments/2193faccd03cad3b.txt diff --git a/22255/data/attachments/21fe1d896d934de9.txt b/22255/data/attachments/21fe1d896d934de9.txt new file mode 100644 index 000000000000..fd793d180022 --- /dev/null +++ b/22255/data/attachments/21fe1d896d934de9.txt @@ -0,0 +1,8 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "831edf02-31b0-43c5-bd39-d6f1033b6ab4", "type": "REQUEST", "details": {"url": "/dp/v1/collections/61753220-4855-425f-9b2a-dd7f3a4a0a5a", "method": "POST", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "831edf02-31b0-43c5-bd39-d6f1033b6ab4", "type": "RESPONSE", "details": {"status_code": 201, "content_length": 7764, "response_time": 0.009514570236206055}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "f49c891d-9b2c-4b51-8c35-58faef026e5d", "type": "REQUEST", "details": {"url": "/dp/v1/collections/1cf62f5f-f014-4ff3-be06-58373af968e0", "method": "DELETE", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "f49c891d-9b2c-4b51-8c35-58faef026e5d", "type": "RESPONSE", "details": {"status_code": 204, "content_length": null, "response_time": 0.0032472610473632812}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "30352ad6-aadb-4438-bd52-269ff991ea15", "type": "REQUEST", "details": {"url": "/dp/v1/collections/1cf62f5f-f014-4ff3-be06-58373af968e0", "method": "GET", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "30352ad6-aadb-4438-bd52-269ff991ea15", "type": "RESPONSE", "details": {"status_code": 403, "content_length": 132, "response_time": 0.0007929801940917969}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "db1ce5c9-863e-4cab-a2c8-135e5b673575", "type": "REQUEST", "details": {"url": "/dp/v1/collections/61753220-4855-425f-9b2a-dd7f3a4a0a5a", "method": "GET", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "db1ce5c9-863e-4cab-a2c8-135e5b673575", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 7749, "response_time": 0.007724285125732422}} diff --git a/22255/data/attachments/2204f0f2145e735b.txt b/22255/data/attachments/2204f0f2145e735b.txt new file mode 100644 index 000000000000..4f2bb0cbbfb3 --- /dev/null +++ b/22255/data/attachments/2204f0f2145e735b.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "fc6adb65-3118-4783-bf4d-e67b7dedfdb1", "type": "REQUEST", "details": {"url": "/dp/v1/collections/6bc8fc19-92b5-4653-a7cc-b90b2f2ca2bc/upload-links", "method": "POST", "content_length": 67}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "fc6adb65-3118-4783-bf4d-e67b7dedfdb1", "type": "RESPONSE", "details": {"status_code": 403, "content_length": 132, "response_time": 0.0027313232421875}} diff --git a/22255/data/attachments/2233931d8a35263a.txt b/22255/data/attachments/2233931d8a35263a.txt new file mode 100644 index 000000000000..99556064aa95 --- /dev/null +++ b/22255/data/attachments/2233931d8a35263a.txt @@ -0,0 +1,4 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "3cfbf3ac-37ec-46cb-a6ee-29a21b268e56", "type": "REQUEST", "details": {"url": "/curation/v1/collections/12f4b122-c226-42f7-baf0-354f44d5fc46/datasets/8d83e742-9a05-4636-8649-06f47ba3ab4b", "method": "PUT", "content_length": 67}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "3cfbf3ac-37ec-46cb-a6ee-29a21b268e56", "type": "RESPONSE", "details": {"status_code": 403, "content_length": 132, "response_time": 0.002069711685180664}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "58b04d97-3ca3-46e3-bd5f-76e8158710ab", "type": "REQUEST", "details": {"url": "/curation/v1/collections/12f4b122-c226-42f7-baf0-354f44d5fc46/datasets/d9d35840-dfe5-40aa-90b7-0f1216e7654f", "method": "PUT", "content_length": 67}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "58b04d97-3ca3-46e3-bd5f-76e8158710ab", "type": "RESPONSE", "details": {"status_code": 403, "content_length": 132, "response_time": 0.0020799636840820312}} diff --git a/22255/data/attachments/234dc836372abe2c.txt b/22255/data/attachments/234dc836372abe2c.txt new file mode 100644 index 000000000000..75f9638c8c97 --- /dev/null +++ b/22255/data/attachments/234dc836372abe2c.txt @@ -0,0 +1,2 @@ +INFO root:h5ad_data_file.py:185 Reading in AnnData dataset: 4022c984-9f2c-46f3-9548-e2ac1dc0b4a2.h5ad +INFO root:h5ad_data_file.py:187 Completed reading in AnnData dataset! \ No newline at end of file diff --git a/22255/data/attachments/2363cce4f238cdbb.txt b/22255/data/attachments/2363cce4f238cdbb.txt new file mode 100644 index 000000000000..d8ae2aeb023a --- /dev/null +++ b/22255/data/attachments/2363cce4f238cdbb.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "b008e14b-ac91-48f1-83b8-0eaa369786fa", "type": "REQUEST", "details": {"url": "/dp/v1/collections/a918c78a-3301-44e8-8c59-713737a10b69/upload-links", "method": "PUT", "content_length": 113}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "b008e14b-ac91-48f1-83b8-0eaa369786fa", "type": "RESPONSE", "details": {"status_code": 404, "content_length": 104, "response_time": 0.0012066364288330078}} diff --git a/22255/data/attachments/23ad8bce62ca36cf.txt b/22255/data/attachments/23ad8bce62ca36cf.txt new file mode 100644 index 000000000000..290fe335abca --- /dev/null +++ b/22255/data/attachments/23ad8bce62ca36cf.txt @@ -0,0 +1 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:19:30.007Z", "name": "backend.layers.business.business", "message": "Restoring previous dataset version", "lineno": 1329, "pathname": "/single-cell-data-portal/backend/layers/business/business.py", "dataset_id": "cd7c5a76-378e-448d-8827-820296422dff", "replace_version_id": "3c825eed-9acf-4437-8925-c57293017873", "restored_version_id": "14c51a52-af2f-4e01-acef-be2f8ae1d32c"} diff --git a/22255/data/attachments/2421600a7b45d1a9.txt b/22255/data/attachments/2421600a7b45d1a9.txt new file mode 100644 index 000000000000..0d0e2b6c79e4 --- /dev/null +++ b/22255/data/attachments/2421600a7b45d1a9.txt @@ -0,0 +1,5 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:19:02.007Z", "name": "root", "message": "", "lineno": 22, "pathname": "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", "dataset_version_id": "123", "collection_version_id": "456", "error": {}, "execution_id": "arn:aws:states:us-west-2:123456789012:execution:MyStateMachine"} +{"levelname": "ERROR", "asctime": "2024-10-07T20:19:09.007Z", "name": "processing", "message": "Failed to update dataset processing status", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 199, in _new_conn\n sock = connection.create_connection(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py\", line 60, in create_connection\n for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):\n File \"/usr/lib/python3.10/socket.py\", line 967, in getaddrinfo\n for res in _socket.getaddrinfo(host, port, family, type, proto, flags):\nsocket.gaierror: [Errno -3] Temporary failure in name resolution\n\nThe above exception was the direct cause of the following exception:\n\nTraceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 464, in send\n urllib_response = conn.urlopen(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 843, in urlopen\n retries = retries.increment(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py\", line 449, in increment\n raise reraise(type(error), error, _stacktrace)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py\", line 39, in reraise\n raise value\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 789, in urlopen\n response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 495, in _make_request\n conn.request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 96, in request\n rval = super().request(method, url, body, headers, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 441, in request\n self.endheaders()\n File \"/usr/lib/python3.10/http/client.py\", line 1278, in endheaders\n self._send_output(message_body, encode_chunked=encode_chunked)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 123, in _send_output\n self.send(msg)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 223, in send\n return super().send(str)\n File \"/usr/lib/python3.10/http/client.py\", line 976, in send\n self.connect()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 279, in connect\n self.sock = self._new_conn()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 206, in _new_conn\n raise NameResolutionError(self.host, self, e) from e\nurllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution)\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 87, in update_dataset_processing_status_to_failed\n get_business_logic().update_dataset_version_status(\n File \"/single-cell-data-portal/backend/portal/api/providers.py\", line 18, in get_business_logic\n DatabaseProvider(),\n File \"/single-cell-data-portal/backend/layers/persistence/persistence.py\", line 57, in __init__\n database_uri = CorporaDbConfig().database_uri\n File \"/single-cell-data-portal/backend/common/utils/secret_config.py\", line 54, in __getattr__\n self.load()\n File \"/single-cell-data-portal/backend/common/utils/secret_config.py\", line 88, in load\n self.load_from_aws()\n File \"/single-cell-data-portal/backend/common/utils/secret_config.py\", line 99, in load_from_aws\n secret = AwsSecret(secret_path)\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 31, in __init__\n self._load()\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 76, in _load\n response = self.secrets_mgr.describe_secret(SecretId=self.name)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 569, in _api_call\n return self._make_api_call(operation_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1005, in _make_api_call\n http, parsed_response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1029, in _make_request\n return self._endpoint.make_request(operation_model, request_dict)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 119, in make_request\n return self._send_request(request_dict, operation_model)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 200, in _send_request\n while self._needs_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 360, in _needs_retry\n responses = self._event_emitter.emit(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 412, in emit\n return self._emitter.emit(aliased_event_name, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 256, in emit\n return self._emit(event_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 239, in _emit\n response = handler(**kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 207, in __call__\n if self._checker(**checker_kwargs):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 284, in __call__\n should_retry = self._should_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 320, in _should_retry\n return self._checker(attempt_number, response, caught_exception)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 363, in __call__\n checker_response = checker(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 247, in __call__\n return self._check_caught_exception(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 416, in _check_caught_exception\n raise caught_exception\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 279, in _do_get_response\n http_response = self._send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 383, in _send\n return self.http_session.send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 493, in send\n raise EndpointConnectionError(endpoint_url=request.url, error=e)\nbotocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: \"http://localstack:4566/\""} +{"levelname": "ERROR", "asctime": "2024-10-07T20:19:19.007Z", "name": "processing", "message": "Failed to clean up artifacts.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 199, in _new_conn\n sock = connection.create_connection(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py\", line 60, in create_connection\n for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):\n File \"/usr/lib/python3.10/socket.py\", line 967, in getaddrinfo\n for res in _socket.getaddrinfo(host, port, family, type, proto, flags):\nsocket.gaierror: [Errno -3] Temporary failure in name resolution\n\nThe above exception was the direct cause of the following exception:\n\nTraceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 464, in send\n urllib_response = conn.urlopen(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 843, in urlopen\n retries = retries.increment(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py\", line 449, in increment\n raise reraise(type(error), error, _stacktrace)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py\", line 39, in reraise\n raise value\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 789, in urlopen\n response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 495, in _make_request\n conn.request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 96, in request\n rval = super().request(method, url, body, headers, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 441, in request\n self.endheaders()\n File \"/usr/lib/python3.10/http/client.py\", line 1278, in endheaders\n self._send_output(message_body, encode_chunked=encode_chunked)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 123, in _send_output\n self.send(msg)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 223, in send\n return super().send(str)\n File \"/usr/lib/python3.10/http/client.py\", line 976, in send\n self.connect()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 279, in connect\n self.sock = self._new_conn()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 206, in _new_conn\n raise NameResolutionError(self.host, self, e) from e\nurllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution)\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 192, in cleanup_artifacts\n delete_many_from_s3(artifact_bucket, object_key + \"/\")\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 107, in delete_many_from_s3\n bucket.objects.filter(Prefix=f\"{prefix}\").delete()\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 555, in batch_action\n return action(self, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py\", line 134, in __call__\n for page in parent.pages():\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 169, in pages\n for page in pages:\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 269, in __iter__\n response = self._make_request(current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 357, in _make_request\n return self._method(**current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 569, in _api_call\n return self._make_api_call(operation_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1005, in _make_api_call\n http, parsed_response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1029, in _make_request\n return self._endpoint.make_request(operation_model, request_dict)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 119, in make_request\n return self._send_request(request_dict, operation_model)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 200, in _send_request\n while self._needs_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 360, in _needs_retry\n responses = self._event_emitter.emit(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 412, in emit\n return self._emitter.emit(aliased_event_name, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 256, in emit\n return self._emit(event_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 239, in _emit\n response = handler(**kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 207, in __call__\n if self._checker(**checker_kwargs):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 284, in __call__\n should_retry = self._should_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 320, in _should_retry\n return self._checker(attempt_number, response, caught_exception)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 363, in __call__\n checker_response = checker(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 247, in __call__\n return self._check_caught_exception(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 416, in _check_caught_exception\n raise caught_exception\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 279, in _do_get_response\n http_response = self._send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 383, in _send\n return self.http_session.send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 493, in send\n raise EndpointConnectionError(endpoint_url=request.url, error=e)\nbotocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: \"http://localstack:4566/artifact-bucket?prefix=123%2F&encoding-type=url\""} +{"levelname": "ERROR", "asctime": "2024-10-07T20:19:19.007Z", "name": "processing", "message": "Failed to clean up datasets.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 194, in cleanup_artifacts\n datasets_bucket = os.environ[\"DATASETS_BUCKET\"]\n File \"/usr/lib/python3.10/os.py\", line 680, in __getitem__\n raise KeyError(key) from None\nKeyError: 'DATASETS_BUCKET'"} +{"levelname": "ERROR", "asctime": "2024-10-07T20:19:25.007Z", "name": "processing", "message": "Failed to clean up cxgs.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 199, in _new_conn\n sock = connection.create_connection(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py\", line 60, in create_connection\n for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):\n File \"/usr/lib/python3.10/socket.py\", line 967, in getaddrinfo\n for res in _socket.getaddrinfo(host, port, family, type, proto, flags):\nsocket.gaierror: [Errno -3] Temporary failure in name resolution\n\nThe above exception was the direct cause of the following exception:\n\nTraceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 464, in send\n urllib_response = conn.urlopen(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 843, in urlopen\n retries = retries.increment(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py\", line 449, in increment\n raise reraise(type(error), error, _stacktrace)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py\", line 39, in reraise\n raise value\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 789, in urlopen\n response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 495, in _make_request\n conn.request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 96, in request\n rval = super().request(method, url, body, headers, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 441, in request\n self.endheaders()\n File \"/usr/lib/python3.10/http/client.py\", line 1278, in endheaders\n self._send_output(message_body, encode_chunked=encode_chunked)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 123, in _send_output\n self.send(msg)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 223, in send\n return super().send(str)\n File \"/usr/lib/python3.10/http/client.py\", line 976, in send\n self.connect()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 279, in connect\n self.sock = self._new_conn()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 206, in _new_conn\n raise NameResolutionError(self.host, self, e) from e\nurllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution)\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 198, in cleanup_artifacts\n delete_many_from_s3(cellxgene_bucket, object_key + \".cxg/\")\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 107, in delete_many_from_s3\n bucket.objects.filter(Prefix=f\"{prefix}\").delete()\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 555, in batch_action\n return action(self, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py\", line 134, in __call__\n for page in parent.pages():\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 169, in pages\n for page in pages:\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 269, in __iter__\n response = self._make_request(current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 357, in _make_request\n return self._method(**current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 569, in _api_call\n return self._make_api_call(operation_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1005, in _make_api_call\n http, parsed_response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1029, in _make_request\n return self._endpoint.make_request(operation_model, request_dict)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 119, in make_request\n return self._send_request(request_dict, operation_model)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 200, in _send_request\n while self._needs_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 360, in _needs_retry\n responses = self._event_emitter.emit(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 412, in emit\n return self._emitter.emit(aliased_event_name, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 256, in emit\n return self._emit(event_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 239, in _emit\n response = handler(**kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 207, in __call__\n if self._checker(**checker_kwargs):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 284, in __call__\n should_retry = self._should_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 320, in _should_retry\n return self._checker(attempt_number, response, caught_exception)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 363, in __call__\n checker_response = checker(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 247, in __call__\n return self._check_caught_exception(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 416, in _check_caught_exception\n raise caught_exception\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 279, in _do_get_response\n http_response = self._send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 383, in _send\n return self.http_session.send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 493, in send\n raise EndpointConnectionError(endpoint_url=request.url, error=e)\nbotocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: \"http://localstack:4566/cellxgene-bucket?prefix=123.cxg%2F&encoding-type=url\""} diff --git a/22255/data/attachments/2448deb3aab3dda8.txt b/22255/data/attachments/2448deb3aab3dda8.txt new file mode 100644 index 000000000000..1ee990fe2dbf --- /dev/null +++ b/22255/data/attachments/2448deb3aab3dda8.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:19:30.007Z", "name": "backend.layers.business.business", "message": "Restoring previous dataset version", "lineno": 1329, "pathname": "/single-cell-data-portal/backend/layers/business/business.py", "dataset_id": "826c8bd4-fdf6-4343-a5a0-e61ee7041cce", "replace_version_id": "ad23b415-057f-4847-95f3-e2f8159bcf5e", "restored_version_id": "ef6bacec-deb8-4aee-afd6-6399145ed482"} +{"levelname": "INFO", "asctime": "2024-10-07T20:19:30.007Z", "name": "backend.layers.business.business", "message": "Restoring previous dataset version", "lineno": 1329, "pathname": "/single-cell-data-portal/backend/layers/business/business.py", "dataset_id": "05392d1d-37eb-4c10-9696-b952f4acb8c4", "replace_version_id": "f90cb351-9830-43bb-9833-c0b5795daa48", "restored_version_id": "f1b4fa2a-e418-480b-8727-bca0cebc4247"} diff --git a/22255/data/attachments/24af07b129647c7c.txt b/22255/data/attachments/24af07b129647c7c.txt new file mode 100644 index 000000000000..213bc3df7884 --- /dev/null +++ b/22255/data/attachments/24af07b129647c7c.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "25a831b3-351c-4dd1-83be-8973b7cc9ea9", "type": "REQUEST", "details": {"url": "/dp/v1/auth/key", "method": "GET", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "25a831b3-351c-4dd1-83be-8973b7cc9ea9", "type": "RESPONSE", "details": {"status_code": 404, "content_length": 104, "response_time": 0.0007736682891845703}} diff --git a/22255/data/attachments/24eb8da9370a69e8.txt b/22255/data/attachments/24eb8da9370a69e8.txt new file mode 100644 index 000000000000..188679b7f94e --- /dev/null +++ b/22255/data/attachments/24eb8da9370a69e8.txt @@ -0,0 +1,15 @@ +INFO root:h5ad_data_file.py:185 Reading in AnnData dataset: 6597496f-527a-45de-a42c-b53b3d14aa10.h5ad +INFO root:h5ad_data_file.py:187 Completed reading in AnnData dataset! +INFO root:h5ad_data_file.py:68 Beginning writing to CXG. +INFO root:h5ad_data_file.py:72 ...group created, with name /single-cell-data-portal/tests/unit/backend/fixtures/6597496f-527a-45de-a42c-b53b3d14aa10.cxg +INFO root:h5ad_data_file.py:77 ...dataset metadata saved +INFO root:h5ad_data_file.py:80 ...dataset obs dataframe saved +INFO root:h5ad_data_file.py:83 ...dataset var dataframe saved +INFO root:h5ad_data_file.py:86 ...dataset uns dataframe saved +INFO root:h5ad_data_file.py:142 .../single-cell-data-portal/tests/unit/backend/fixtures/6597496f-527a-45de-a42c-b53b3d14aa10.cxg/emb/awesome_embedding embedding created +INFO root:h5ad_data_file.py:89 ...dataset embeddings saved +INFO root:h5ad_data_file.py:101 is_sparse: False +INFO root:cxg_generation_utils.py:217 create /single-cell-data-portal/tests/unit/backend/fixtures/6597496f-527a-45de-a42c-b53b3d14aa10.cxg/X +INFO root:h5ad_data_file.py:106 start consolidating +INFO root:h5ad_data_file.py:92 ...dataset X matrix saved +INFO root:h5ad_data_file.py:94 Completed writing to CXG. \ No newline at end of file diff --git a/22255/data/attachments/259b72720c1c34dc.txt b/22255/data/attachments/259b72720c1c34dc.txt new file mode 100644 index 000000000000..72b4976d49b4 --- /dev/null +++ b/22255/data/attachments/259b72720c1c34dc.txt @@ -0,0 +1 @@ +INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 2bc12cd1-9247-47d9-b23b-5df7bfc1f7ab, 'url': 'http://fake.url', 'current_dataset_version_id': None} \ No newline at end of file diff --git a/22255/data/attachments/25d80af610a62786.txt b/22255/data/attachments/25d80af610a62786.txt new file mode 100644 index 000000000000..ae0f2b2e5e6e --- /dev/null +++ b/22255/data/attachments/25d80af610a62786.txt @@ -0,0 +1,4 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:22.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "2280f51b-89a1-4d97-b5c7-e4b8ad838613", "type": "REQUEST", "details": {"url": "/curation/v1/collections/bb877f31-ca52-4ed2-ac74-39a5967a0b5e/datasets/57a97264-dab9-4dc7-857e-fa327a818c95", "method": "GET", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:22.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "2280f51b-89a1-4d97-b5c7-e4b8ad838613", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 2472, "response_time": 0.004082202911376953}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:22.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "7439485d-4b86-4177-b716-63b423a5c163", "type": "REQUEST", "details": {"url": "/curation/v1/collections/bb877f31-ca52-4ed2-ac74-39a5967a0b5e/datasets/57a97264-dab9-4dc7-857e-fa327a818c95", "method": "GET", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:22.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "7439485d-4b86-4177-b716-63b423a5c163", "type": "RESPONSE", "details": {"status_code": 410, "content_length": 105, "response_time": 0.0024566650390625}} diff --git a/22255/data/attachments/25d9f835578c3f06.txt b/22255/data/attachments/25d9f835578c3f06.txt new file mode 100644 index 000000000000..317fe0b6d94d --- /dev/null +++ b/22255/data/attachments/25d9f835578c3f06.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:22.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "a655f84b-be0e-4c4d-8a6e-774da2709492", "type": "REQUEST", "details": {"url": "/curation/v1/collections/e3c8e563-9eb9-4f99-831e-3352487a25a0/datasets/c17ec742-e0a9-4231-aa93-773fc539d680", "method": "PATCH", "content_length": 22}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:22.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "a655f84b-be0e-4c4d-8a6e-774da2709492", "type": "RESPONSE", "details": {"status_code": 404, "content_length": 104, "response_time": 0.0011360645294189453}} diff --git a/22255/data/attachments/25e4aa64bf4a7536.txt b/22255/data/attachments/25e4aa64bf4a7536.txt new file mode 100644 index 000000000000..82c8fe16458b --- /dev/null +++ b/22255/data/attachments/25e4aa64bf4a7536.txt @@ -0,0 +1,10 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:18:34.007Z", "name": "backend.layers.business.business", "message": "ingesting dataset", "lineno": 553, "pathname": "/single-cell-data-portal/backend/layers/business/business.py", "collection_version_id": "f900c185-3e94-48f7-94c2-df1c025581fe", "url": "http://fake.url", "current_dataset_version_id": null} +{"levelname": "INFO", "asctime": "2024-10-07T20:18:34.007Z", "name": "backend.layers.business.business", "message": "ingesting dataset", "lineno": 553, "pathname": "/single-cell-data-portal/backend/layers/business/business.py", "collection_version_id": "f900c185-3e94-48f7-94c2-df1c025581fe", "url": null, "current_dataset_version_id": "a1eb5ca2-e19b-47db-967a-0b4029aca01a"} +{"levelname": "INFO", "asctime": "2024-10-07T20:18:34.007Z", "name": "processing", "message": "Updating processing status", "lineno": 45, "pathname": "/single-cell-data-portal/backend/layers/processing/process_logic.py", "validation_message": null, "status_key": "upload", "status_value": "DatasetUploadStatus.UPLOADING", "dataset_version_id": "8a920f3e-141d-4b8f-88f0-44656a15f4dd"} +{"levelname": "INFO", "asctime": "2024-10-07T20:18:34.007Z", "name": "processing", "message": "Start create_artifact", "lineno": 26, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "type": "METRIC"} +{"levelname": "INFO", "asctime": "2024-10-07T20:18:34.007Z", "name": "processing", "message": "Updating processing status", "lineno": 45, 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"asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "063641df-9f22-4773-94d2-20c1a2398656", "type": "REQUEST", "details": {"url": "/dp/v1/collections", "method": "POST", "content_length": 296}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "063641df-9f22-4773-94d2-20c1a2398656", "type": "RESPONSE", "details": {"status_code": 201, "content_length": 62, "response_time": 0.0012574195861816406}} diff --git a/22255/data/attachments/3615089784260269.txt b/22255/data/attachments/3615089784260269.txt new file mode 100644 index 000000000000..9462b5ffb897 --- /dev/null +++ b/22255/data/attachments/3615089784260269.txt @@ -0,0 +1,4 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "63f424fd-8b87-4a29-a196-e6a08cffa567", "type": "REQUEST", "details": {"url": "/dp/v1/datasets/95fd54e4-a9c6-4b4a-abd3-c74b1e8b8ca9", "method": "DELETE", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "63f424fd-8b87-4a29-a196-e6a08cffa567", "type": "RESPONSE", "details": {"status_code": 202, "content_length": null, "response_time": 0.003387928009033203}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "8a3b3669-420e-4b1e-807c-05e4efde231f", "type": "REQUEST", "details": {"url": "/dp/v1/datasets/1f0ab0ab-4ff0-4c3b-b089-dc828a1ebeaa", "method": "DELETE", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "8a3b3669-420e-4b1e-807c-05e4efde231f", "type": "RESPONSE", "details": {"status_code": 202, "content_length": null, "response_time": 0.003356456756591797}} diff --git a/22255/data/attachments/3683eabed6b79061.txt b/22255/data/attachments/3683eabed6b79061.txt new file mode 100644 index 000000000000..0685a495f899 --- /dev/null +++ b/22255/data/attachments/3683eabed6b79061.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:21.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "15b4727d-9929-4562-ad04-8e11fb7c9875", "type": "REQUEST", "details": {"url": "/curation/v1/collections/da77f817-0765-452b-aed4-a82a4cc0c059", "method": "PATCH", "content_length": 118}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:21.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "15b4727d-9929-4562-ad04-8e11fb7c9875", "type": "RESPONSE", "details": {"status_code": 403, "content_length": 132, "response_time": 0.0010840892791748047}} diff --git a/22255/data/attachments/3688307eb314808f.txt b/22255/data/attachments/3688307eb314808f.txt new file mode 100644 index 000000000000..7a6dd893e2f3 --- /dev/null +++ b/22255/data/attachments/3688307eb314808f.txt @@ -0,0 +1,8 @@ +INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 5a0e6a9b-490e-46c3-b0fd-1907487212bb, 'url': 'nothing', 'current_dataset_version_id': None} +INFO processing:process_logic.py:113 Converting local.h5ad +INFO processing:process_logic.py:45 Updating processing status +INFO processing:process_logic.py:45 Updating processing status +INFO processing:process_logic.py:119 Finished converting in 0:00:00.000620 +INFO processing:process_logic.py:45 Updating processing status +INFO processing:process_cxg.py:109 Updating database with cxg artifact for dataset 69dc6857-7c1a-471f-b644-269e13922260. s3_uri is s3://fake_cxg_bucket/69dc6857-7c1a-471f-b644-269e13922260.cxg/ +INFO processing:process_logic.py:45 Updating processing status \ No newline at end of file diff --git a/22255/data/attachments/36a0cea2b108f275.txt b/22255/data/attachments/36a0cea2b108f275.txt new file mode 100644 index 000000000000..efbbbc584301 --- /dev/null +++ b/22255/data/attachments/36a0cea2b108f275.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "5f07e54e-0855-42a3-bf27-c99db6a474c0", "type": "REQUEST", "details": {"url": "/dp/v1/collections/1bfe4483-9857-454c-978a-41094e0a96ed/upload-links", "method": "POST", "content_length": 66}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "5f07e54e-0855-42a3-bf27-c99db6a474c0", "type": "RESPONSE", "details": {"status_code": 401, "content_length": 119, "response_time": 0.0006597042083740234}} diff --git a/22255/data/attachments/36d07a8da2c3f051.txt b/22255/data/attachments/36d07a8da2c3f051.txt new file mode 100644 index 000000000000..e964693cd25d --- /dev/null +++ b/22255/data/attachments/36d07a8da2c3f051.txt @@ -0,0 +1,3 @@ +{"levelname": "ERROR", "asctime": "2024-10-07T20:19:25.007Z", "name": "processing", "message": "Failed to clean up artifacts.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 192, in cleanup_artifacts\n delete_many_from_s3(artifact_bucket, object_key + \"/\")\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1114, in __call__\n return self._mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1118, in _mock_call\n return self._execute_mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1173, in _execute_mock_call\n raise effect\nException: Boom!"} +{"levelname": "ERROR", "asctime": "2024-10-07T20:19:25.007Z", "name": "processing", "message": "Failed to clean up datasets.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 195, in cleanup_artifacts\n delete_many_from_s3(datasets_bucket, object_key + \".\")\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1114, in __call__\n return self._mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1118, in _mock_call\n return self._execute_mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1173, in _execute_mock_call\n raise effect\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 192, in cleanup_artifacts\n delete_many_from_s3(artifact_bucket, object_key + \"/\")\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1114, in __call__\n return self._mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1118, in _mock_call\n return self._execute_mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1173, in _execute_mock_call\n raise effect\nException: Boom!"} +{"levelname": "ERROR", "asctime": "2024-10-07T20:19:25.007Z", "name": "processing", "message": "Failed to clean up cxgs.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 198, in cleanup_artifacts\n delete_many_from_s3(cellxgene_bucket, object_key + \".cxg/\")\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1114, in __call__\n return self._mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1118, in _mock_call\n return self._execute_mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1173, in _execute_mock_call\n raise effect\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 195, in cleanup_artifacts\n delete_many_from_s3(datasets_bucket, object_key + \".\")\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1114, in __call__\n return self._mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1118, in _mock_call\n return self._execute_mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1173, in _execute_mock_call\n raise effect\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 192, in cleanup_artifacts\n delete_many_from_s3(artifact_bucket, object_key + \"/\")\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1114, in __call__\n return self._mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1118, in _mock_call\n return self._execute_mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1173, in _execute_mock_call\n raise effect\nException: Boom!"} diff --git a/22255/data/attachments/375dfb911ff6342c.txt b/22255/data/attachments/375dfb911ff6342c.txt new file mode 100644 index 000000000000..f9fdb75ffc5c --- /dev/null +++ b/22255/data/attachments/375dfb911ff6342c.txt @@ -0,0 +1,15 @@ +INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 8ebf3ffa-3cbd-4619-963b-7055c8342f1f, 'url': 'nothing', 'current_dataset_version_id': None} +INFO processing:process_logic.py:113 Converting local.h5ad +INFO processing:process_logic.py:45 Updating processing status +INFO processing:process_logic.py:45 Updating processing status +INFO processing:process_logic.py:119 Finished converting in 0:00:00.000550 +INFO processing:process_logic.py:45 Updating processing status +INFO processing:process_cxg.py:109 Updating database with cxg artifact for dataset e180e9b8-a94f-4a52-a932-0461b16f37af. s3_uri is s3://fake_cxg_bucket/e180e9b8-a94f-4a52-a932-0461b16f37af.cxg/ +INFO processing:process_logic.py:45 Updating processing status +INFO processing:process_logic.py:113 Converting local.h5ad +INFO processing:process_logic.py:45 Updating processing status +INFO processing:process_logic.py:45 Updating processing status +INFO processing:process_logic.py:119 Finished converting in 0:00:00.000250 +INFO processing:process_logic.py:45 Updating processing status +INFO processing:process_cxg.py:109 Updating database with cxg artifact for dataset e180e9b8-a94f-4a52-a932-0461b16f37af. s3_uri is s3://fake_cxg_bucket/e180e9b8-a94f-4a52-a932-0461b16f37af.cxg/ +INFO processing:process_logic.py:45 Updating processing status \ No newline at end of file diff --git a/22255/data/attachments/3765118e8b60731b.txt b/22255/data/attachments/3765118e8b60731b.txt new file mode 100644 index 000000000000..a31231f375bc --- /dev/null +++ b/22255/data/attachments/3765118e8b60731b.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:18:35.007Z", "name": "root", "message": "s3_event", "lineno": 60, "pathname": "/single-cell-data-portal/backend/layers/processing/submissions/app.py", "Records": [{"s3": {"bucket": {"name": "some_bucket"}, "object": {"key": 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ddtrace.internal.remoteconfig._subscribers:_subscribers.py:47 [PID 1 | PPID 0] Subscriber ASM got data +DEBUG ddtrace.internal.remoteconfig.worker:worker.py:53 Agent is down or Remote Config is not enabled in the Agent +Check your Agent version, you need an Agent running on 7.39.1 version or above. +Check Your Remote Config environment variables on your Agent: +DD_REMOTE_CONFIGURATION_ENABLED=true +See: https://docs.datadoghq.com/agent/guide/how_remote_config_works/ +DEBUG ddtrace.internal.remoteconfig._subscribers:_subscribers.py:45 [PID 1 | PPID 0] Subscriber ASM is getting data, 8 additional messages skipped +DEBUG ddtrace.internal.remoteconfig._subscribers:_subscribers.py:47 [PID 1 | PPID 0] Subscriber ASM got data, 8 additional messages skipped +DEBUG ddtrace.internal.remoteconfig.worker:worker.py:53 Agent is down or Remote Config is not enabled in the Agent +Check your Agent version, you need an Agent running on 7.39.1 version or above. +Check Your Remote Config environment variables on your Agent: +DD_REMOTE_CONFIGURATION_ENABLED=true +See: https://docs.datadoghq.com/agent/guide/how_remote_config_works/, 3 additional messages skipped \ No newline at end of file diff --git a/22255/data/attachments/42f792ac01ebb888.txt b/22255/data/attachments/42f792ac01ebb888.txt new file mode 100644 index 000000000000..ccd1b148f0c8 --- /dev/null +++ b/22255/data/attachments/42f792ac01ebb888.txt @@ -0,0 +1,16 @@ +INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 86d7bff1-87ae-489f-9e20-5275a895ad61, 'url': 'http://fake.url', 'current_dataset_version_id': None} +INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 86d7bff1-87ae-489f-9e20-5275a895ad61, 'url': None, 'current_dataset_version_id': a33f0ea4-fe54-4ccf-881d-4ebb55c0c716} +INFO processing:dataset_metadata_update.py:333 Main: No raw h5ad update required +INFO processing:process_logic.py:45 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'1b9b787d-71b7-47db-8372-6db6a3d70af7', '1b9b787d-71b7-47db-8372-6db6a3d70af7', '1b9b787d-71b7-47db-8372-6db6a3d70af7'] +public_dataset.dataset_version_id: 8840cd2a-0bde-4272-b40c-d5c81b399b08 +private_dataset.dataset_version_id: 1b9b787d-71b7-47db-8372-6db6a3d70af7 diff --git a/22255/data/attachments/6e2048eaf81fdc21.txt b/22255/data/attachments/6e2048eaf81fdc21.txt new file mode 100644 index 000000000000..79dbef1a4409 --- /dev/null +++ b/22255/data/attachments/6e2048eaf81fdc21.txt @@ -0,0 +1,15 @@ +INFO root:h5ad_data_file.py:185 Reading in AnnData dataset: 8588b126-7053-44f1-93ba-0b95bc39a1af.h5ad +INFO root:h5ad_data_file.py:187 Completed reading in AnnData dataset! +INFO root:h5ad_data_file.py:68 Beginning writing to CXG. +INFO root:h5ad_data_file.py:72 ...group created, with name /single-cell-data-portal/tests/unit/backend/fixtures/8588b126-7053-44f1-93ba-0b95bc39a1af.cxg +INFO root:h5ad_data_file.py:77 ...dataset metadata saved +INFO root:h5ad_data_file.py:80 ...dataset obs dataframe saved +INFO root:h5ad_data_file.py:83 ...dataset var dataframe saved +INFO root:h5ad_data_file.py:86 ...dataset uns dataframe saved +INFO root:h5ad_data_file.py:142 .../single-cell-data-portal/tests/unit/backend/fixtures/8588b126-7053-44f1-93ba-0b95bc39a1af.cxg/emb/awesome_embedding embedding created +INFO root:h5ad_data_file.py:89 ...dataset embeddings saved +INFO root:h5ad_data_file.py:101 is_sparse: False +INFO root:cxg_generation_utils.py:217 create /single-cell-data-portal/tests/unit/backend/fixtures/8588b126-7053-44f1-93ba-0b95bc39a1af.cxg/X +INFO root:h5ad_data_file.py:106 start consolidating +INFO root:h5ad_data_file.py:92 ...dataset X matrix saved +INFO root:h5ad_data_file.py:94 Completed writing to CXG. \ No newline at end of file diff --git a/22255/data/attachments/6e84a65f1115d290.txt b/22255/data/attachments/6e84a65f1115d290.txt new file mode 100644 index 000000000000..a48cccf1dabb --- /dev/null +++ b/22255/data/attachments/6e84a65f1115d290.txt @@ -0,0 +1,3 @@ +{"levelname": "WARNING", "asctime": "2024-10-07T20:19:30.007Z", "name": "root", "message": "Type float64 will be converted to 32 bit float and may lose precision.", "lineno": 155, "pathname": "/single-cell-data-portal/backend/layers/processing/utils/type_conversion_utils.py"} +{"levelname": "WARNING", "asctime": "2024-10-07T20:19:30.007Z", "name": "root", "message": "Type float64 will be converted to 32 bit float and may lose precision.", "lineno": 155, "pathname": "/single-cell-data-portal/backend/layers/processing/utils/type_conversion_utils.py"} +{"levelname": "WARNING", "asctime": "2024-10-07T20:19:30.007Z", "name": "root", "message": "Type float64 will be converted to 32 bit float and may lose precision.", "lineno": 155, "pathname": "/single-cell-data-portal/backend/layers/processing/utils/type_conversion_utils.py"} diff --git a/22255/data/attachments/6ec61b9df6a2e1eb.txt b/22255/data/attachments/6ec61b9df6a2e1eb.txt new file mode 100644 index 000000000000..3bb99d461a28 --- /dev/null +++ b/22255/data/attachments/6ec61b9df6a2e1eb.txt @@ -0,0 +1,2 @@ +Successfully tombstoned Collection 10543451-8ecd-4438-aff8-9257246a7dff +Successfully resurrected Collection 10543451-8ecd-4438-aff8-9257246a7dff diff --git a/22255/data/attachments/6efe98cb82446598.txt b/22255/data/attachments/6efe98cb82446598.txt new file mode 100644 index 000000000000..881b7cb8a049 --- /dev/null +++ b/22255/data/attachments/6efe98cb82446598.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "e786e3da-6fd3-496b-9497-7d975653961b", "type": "REQUEST", "details": {"url": "/dp/v1/collections/ce8133e1-b160-4830-9ad8-8de0ec087338/upload-links", "method": "POST", "content_length": 67}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "e786e3da-6fd3-496b-9497-7d975653961b", "type": "RESPONSE", "details": {"status_code": 403, "content_length": 132, "response_time": 0.0008883476257324219}} diff --git a/22255/data/attachments/6f8fce15207893f0.txt b/22255/data/attachments/6f8fce15207893f0.txt new file mode 100644 index 000000000000..7138ee71d1d2 --- /dev/null +++ b/22255/data/attachments/6f8fce15207893f0.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "55ac81f8-65dd-4353-ab5a-46510b3a6a31", "type": "REQUEST", "details": {"url": "/curation/v1/auth/token", "method": "POST", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "55ac81f8-65dd-4353-ab5a-46510b3a6a31", "type": "RESPONSE", "details": {"status_code": 401, "content_length": 147, "response_time": 0.0008618831634521484}} diff --git a/22255/data/attachments/7008ba140b9b52e2.txt b/22255/data/attachments/7008ba140b9b52e2.txt new file mode 100644 index 000000000000..d28cece8c543 --- /dev/null +++ b/22255/data/attachments/7008ba140b9b52e2.txt @@ -0,0 +1 @@ +{'access_type': 'WRITE', 'consortia': ['Consortia 1', 'Consortia 2'], 'contact_email': 'john.doe@email.com', 'contact_name': 'john doe', 'created_at': 1728332245.427864, 'curator_name': 'Jane Smith', 'datasets': [{'assay': [{'label': 'test_assay_label', 'ontology_term_id': 'test_assay_term_id'}], 'batch_condition': ['test_batch_1', 'test_batch_2'], 'cell_count': 10, 'cell_type': [{'label': 'unknown', 'ontology_term_id': 'unknown'}], 'collection_id': '61753220-4855-425f-9b2a-dd7f3a4a0a5a', 'created_at': 1728332245.415162, 'dataset_assets': [{'created_at': 0, 'dataset_id': '72a3707f-c72e-4716-adef-6634142ff3c0', 'filename': 'local.h5ad', 'filetype': 'H5AD', 'id': '444e8f67-1927-4b1c-8cf5-a639b3070448', 's3_uri': 's3://fake.bucket/72a3707f-c72e-4716-adef-6634142ff3c0/local.h5ad', 'updated_at': 0, 'user_submitted': True}, {'created_at': 0, 'dataset_id': '72a3707f-c72e-4716-adef-6634142ff3c0', 'filename': 'local.cxg', 'filetype': 'CXG', 'id': '948d0dad-da1d-4f27-86b1-615658ccb17a', 's3_uri': 's3://fake.bucket/72a3707f-c72e-4716-adef-6634142ff3c0/local.cxg', 'updated_at': 0, 'user_submitted': True}, {'created_at': 0, 'dataset_id': '72a3707f-c72e-4716-adef-6634142ff3c0', 'filename': 'local.rds', 'filetype': 'RDS', 'id': '6e855013-6759-4e3f-ad1e-828ded87eef0', 's3_uri': 's3://fake.bucket/72a3707f-c72e-4716-adef-6634142ff3c0/local.rds', 'updated_at': 0, 'user_submitted': True}], 'dataset_deployments': [{'url': '/e/72a3707f-c72e-4716-adef-6634142ff3c0.cxg/'}], 'development_stage': [{'label': 'unknown', 'ontology_term_id': 'unknown'}], 'disease': [{'label': 'test_disease_label', 'ontology_term_id': 'test_disease_term_id'}], 'donor_id': ['test_donor_1'], 'id': '72a3707f-c72e-4716-adef-6634142ff3c0', 'is_primary_data': 'BOTH', 'is_valid': True, 'mean_genes_per_cell': 0.5, 'name': 'test_dataset_name', 'organism': [{'label': 'test_organism_label', 'ontology_term_id': 'test_organism_term_id'}], 'primary_cell_count': 5, 'processing_status': {'created_at': 0, 'cxg_status': 'NA', 'dataset_id': '72a3707f-c72e-4716-adef-6634142ff3c0', 'h5ad_status': 'NA', 'id': 'NA', 'processing_status': 'INITIALIZED', 'rds_status': 'NA', 'updated_at': 0, 'upload_progress': 1, 'upload_status': 'WAITING', 'validation_status': 'NA'}, 'published': True, 'published_at': 1728332245.420171, 'revision': 0, 'schema_version': '3.0.0', 'self_reported_ethnicity': [{'label': 'test_self_reported_ethnicity_label', 'ontology_term_id': 'test_self_reported_ethnicity_term_id'}], 'sex': [{'label': 'test_sex_label', 'ontology_term_id': 'test_sex_term_id'}], 'suspension_type': ['test_suspension_type'], 'tissue': [{'label': 'unknown', 'ontology_term_id': 'unknown', 'tissue_type': 'tissue'}], 'tombstone': False, 'updated_at': 1728332245.415162, 'x_approximate_distribution': 'normal'}, {'assay': [{'label': 'test_assay_label', 'ontology_term_id': 'test_assay_term_id'}], 'batch_condition': ['test_batch_1', 'test_batch_2'], 'cell_count': 10, 'cell_type': [{'label': 'unknown', 'ontology_term_id': 'unknown'}], 'collection_id': '61753220-4855-425f-9b2a-dd7f3a4a0a5a', 'created_at': 1728332245.416671, 'dataset_assets': [{'created_at': 0, 'dataset_id': '3826978f-056c-4291-b2c5-d0a41f5fa918', 'filename': 'local.h5ad', 'filetype': 'H5AD', 'id': '6429e626-0fe0-4f96-9f15-e8d3e0443622', 's3_uri': 's3://fake.bucket/3826978f-056c-4291-b2c5-d0a41f5fa918/local.h5ad', 'updated_at': 0, 'user_submitted': True}, {'created_at': 0, 'dataset_id': '3826978f-056c-4291-b2c5-d0a41f5fa918', 'filename': 'local.cxg', 'filetype': 'CXG', 'id': 'f500e4b8-5c70-4fd9-806f-9c34dc30b586', 's3_uri': 's3://fake.bucket/3826978f-056c-4291-b2c5-d0a41f5fa918/local.cxg', 'updated_at': 0, 'user_submitted': True}, {'created_at': 0, 'dataset_id': '3826978f-056c-4291-b2c5-d0a41f5fa918', 'filename': 'local.rds', 'filetype': 'RDS', 'id': '0e7ca44e-20a9-4663-aae1-737acc060907', 's3_uri': 's3://fake.bucket/3826978f-056c-4291-b2c5-d0a41f5fa918/local.rds', 'updated_at': 0, 'user_submitted': True}], 'dataset_deployments': [{'url': '/e/3826978f-056c-4291-b2c5-d0a41f5fa918.cxg/'}], 'development_stage': [{'label': 'unknown', 'ontology_term_id': 'unknown'}], 'disease': [{'label': 'test_disease_label', 'ontology_term_id': 'test_disease_term_id'}], 'donor_id': ['test_donor_1'], 'id': '3826978f-056c-4291-b2c5-d0a41f5fa918', 'is_primary_data': 'BOTH', 'is_valid': True, 'mean_genes_per_cell': 0.5, 'name': 'test_dataset_name', 'organism': [{'label': 'test_organism_label', 'ontology_term_id': 'test_organism_term_id'}], 'primary_cell_count': 5, 'processing_status': {'created_at': 0, 'cxg_status': 'NA', 'dataset_id': '3826978f-056c-4291-b2c5-d0a41f5fa918', 'h5ad_status': 'NA', 'id': 'NA', 'processing_status': 'INITIALIZED', 'rds_status': 'NA', 'updated_at': 0, 'upload_progress': 1, 'upload_status': 'WAITING', 'validation_status': 'NA'}, 'published': True, 'published_at': 1728332245.420171, 'revision': 0, 'schema_version': '3.0.0', 'self_reported_ethnicity': [{'label': 'test_self_reported_ethnicity_label', 'ontology_term_id': 'test_self_reported_ethnicity_term_id'}], 'sex': [{'label': 'test_sex_label', 'ontology_term_id': 'test_sex_term_id'}], 'suspension_type': ['test_suspension_type'], 'tissue': [{'label': 'unknown', 'ontology_term_id': 'unknown', 'tissue_type': 'tissue'}], 'tombstone': False, 'updated_at': 1728332245.416671, 'x_approximate_distribution': 'normal'}], 'description': 'described', 'id': '1cf62f5f-f014-4ff3-be06-58373af968e0', 'links': [], 'name': 'test_collection', 'published_at': 1728332245.420171, 'revision_of': '61753220-4855-425f-9b2a-dd7f3a4a0a5a', 'updated_at': 1728332245.427864, 'visibility': 'PRIVATE'} diff --git a/22255/data/attachments/70105a05b851bcac.txt b/22255/data/attachments/70105a05b851bcac.txt new file mode 100644 index 000000000000..c5918079cc31 --- /dev/null +++ b/22255/data/attachments/70105a05b851bcac.txt @@ -0,0 +1,302 @@ +INFO root:app.py:22 {'dataset_version_id': '123', 'collection_version_id': '456', 'error': {}, 'execution_id': 'arn:aws:states:us-west-2:migrate_123456789012:execution:MyStateMachine'} +INFO root:app.py:33 Skipping slack notification for arn:aws:states:us-west-2:migrate_123456789012:execution:MyStateMachine because failure is related to a schema migration +ERROR processing:logger.py:41 Failed to update dataset processing status +Traceback (most recent call last): + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 199, in _new_conn + sock = connection.create_connection( + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py", line 60, in create_connection + for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM): + File "/usr/lib/python3.10/socket.py", line 967, in getaddrinfo + for res in _socket.getaddrinfo(host, port, family, type, proto, flags): +socket.gaierror: [Errno -3] Temporary failure in name resolution + +The above exception was the direct cause of the following exception: + +Traceback (most recent call last): + File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 464, in send + urllib_response = conn.urlopen( + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 843, in urlopen + retries = retries.increment( + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py", line 449, in increment + raise reraise(type(error), error, _stacktrace) + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py", line 39, in reraise + raise value + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 789, in urlopen + response = self._make_request( + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 495, in _make_request + conn.request( + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 96, in request + rval = super().request(method, url, body, headers, *args, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 441, in request + self.endheaders() + File "/usr/lib/python3.10/http/client.py", line 1278, in endheaders + self._send_output(message_body, encode_chunked=encode_chunked) + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 123, in _send_output + self.send(msg) + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 223, in send + return super().send(str) + File "/usr/lib/python3.10/http/client.py", line 976, in send + self.connect() + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 279, in connect + self.sock = self._new_conn() + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 206, in _new_conn + raise NameResolutionError(self.host, self, e) from e +urllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution) + +During handling of the above exception, another exception occurred: + +Traceback (most recent call last): + File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 87, in update_dataset_processing_status_to_failed + get_business_logic().update_dataset_version_status( + File "/single-cell-data-portal/backend/portal/api/providers.py", line 18, in get_business_logic + DatabaseProvider(), + File "/single-cell-data-portal/backend/layers/persistence/persistence.py", line 57, in __init__ + database_uri = CorporaDbConfig().database_uri + File "/single-cell-data-portal/backend/common/utils/secret_config.py", line 54, in __getattr__ + self.load() + File "/single-cell-data-portal/backend/common/utils/secret_config.py", line 88, in load + self.load_from_aws() + File "/single-cell-data-portal/backend/common/utils/secret_config.py", line 99, in load_from_aws + secret = AwsSecret(secret_path) + File "/single-cell-data-portal/backend/common/utils/aws.py", line 31, in __init__ + self._load() + File "/single-cell-data-portal/backend/common/utils/aws.py", line 76, in _load + response = self.secrets_mgr.describe_secret(SecretId=self.name) + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 569, in _api_call + return self._make_api_call(operation_name, kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1005, in _make_api_call + http, parsed_response = self._make_request( + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1029, in _make_request + return self._endpoint.make_request(operation_model, request_dict) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 119, in make_request + return self._send_request(request_dict, operation_model) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 200, in _send_request + while self._needs_retry( + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 360, in _needs_retry + responses = self._event_emitter.emit( + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 412, in emit + return self._emitter.emit(aliased_event_name, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 256, in emit + return self._emit(event_name, kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 239, in _emit + response = handler(**kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 207, in __call__ + if self._checker(**checker_kwargs): + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 284, in __call__ + should_retry = self._should_retry( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 320, in _should_retry + return self._checker(attempt_number, response, caught_exception) + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 363, in __call__ + checker_response = checker( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 247, in __call__ + return self._check_caught_exception( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 416, in _check_caught_exception + raise caught_exception + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 279, in _do_get_response + http_response = self._send(request) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 383, in _send + return self.http_session.send(request) + File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 493, in send + raise EndpointConnectionError(endpoint_url=request.url, error=e) +botocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: "http://localstack:4566/" +ERROR processing:logger.py:41 Failed to clean up artifacts. +Traceback (most recent call last): + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 199, in _new_conn + sock = connection.create_connection( + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py", line 60, in create_connection + for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM): + File "/usr/lib/python3.10/socket.py", line 967, in getaddrinfo + for res in _socket.getaddrinfo(host, port, family, type, proto, flags): +socket.gaierror: [Errno -3] Temporary failure in name resolution + +The above exception was the direct cause of the following exception: + +Traceback (most recent call last): + File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 464, in send + urllib_response = conn.urlopen( + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 843, in urlopen + retries = retries.increment( + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py", line 449, in increment + raise reraise(type(error), error, _stacktrace) + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py", line 39, in reraise + raise value + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 789, in urlopen + response = self._make_request( + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 495, in _make_request + conn.request( + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 96, in request + rval = super().request(method, url, body, headers, *args, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 441, in request + self.endheaders() + File "/usr/lib/python3.10/http/client.py", line 1278, in endheaders + self._send_output(message_body, encode_chunked=encode_chunked) + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 123, in _send_output + self.send(msg) + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 223, in send + return super().send(str) + File "/usr/lib/python3.10/http/client.py", line 976, in send + self.connect() + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 279, in connect + self.sock = self._new_conn() + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 206, in _new_conn + raise NameResolutionError(self.host, self, e) from e +urllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution) + +During handling of the above exception, another exception occurred: + +Traceback (most recent call last): + File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 192, in cleanup_artifacts + delete_many_from_s3(artifact_bucket, object_key + "/") + File "/single-cell-data-portal/backend/common/utils/aws.py", line 107, in delete_many_from_s3 + bucket.objects.filter(Prefix=f"{prefix}").delete() + File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 555, in batch_action + return action(self, *args, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py", line 134, in __call__ + for page in parent.pages(): + File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 169, in pages + for page in pages: + File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 269, in __iter__ + response = self._make_request(current_kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 357, in _make_request + return self._method(**current_kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 569, in _api_call + return self._make_api_call(operation_name, kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1005, in _make_api_call + http, parsed_response = self._make_request( + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1029, in _make_request + return self._endpoint.make_request(operation_model, request_dict) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 119, in make_request + return self._send_request(request_dict, operation_model) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 200, in _send_request + while self._needs_retry( + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 360, in _needs_retry + responses = self._event_emitter.emit( + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 412, in emit + return self._emitter.emit(aliased_event_name, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 256, in emit + return self._emit(event_name, kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 239, in _emit + response = handler(**kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 207, in __call__ + if self._checker(**checker_kwargs): + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 284, in __call__ + should_retry = self._should_retry( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 320, in _should_retry + return self._checker(attempt_number, response, caught_exception) + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 363, in __call__ + checker_response = checker( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 247, in __call__ + return self._check_caught_exception( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 416, in _check_caught_exception + raise caught_exception + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 279, in _do_get_response + http_response = self._send(request) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 383, in _send + return self.http_session.send(request) + File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 493, in send + raise EndpointConnectionError(endpoint_url=request.url, error=e) +botocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: "http://localstack:4566/artifact-bucket?prefix=123%2F&encoding-type=url" +ERROR processing:logger.py:41 Failed to clean up datasets. +Traceback (most recent call last): + File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 194, in cleanup_artifacts + datasets_bucket = os.environ["DATASETS_BUCKET"] + File "/usr/lib/python3.10/os.py", line 680, in __getitem__ + raise KeyError(key) from None +KeyError: 'DATASETS_BUCKET' +ERROR processing:logger.py:41 Failed to clean up cxgs. +Traceback (most recent call last): + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 199, in _new_conn + sock = connection.create_connection( + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py", line 60, in create_connection + for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM): + File "/usr/lib/python3.10/socket.py", line 967, in getaddrinfo + for res in _socket.getaddrinfo(host, port, family, type, proto, flags): +socket.gaierror: [Errno -3] Temporary failure in name resolution + +The above exception was the direct cause of the following exception: + +Traceback (most recent call last): + File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 464, in send + urllib_response = conn.urlopen( + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 843, in urlopen + retries = retries.increment( + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py", line 449, in increment + raise reraise(type(error), error, _stacktrace) + File "/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py", line 39, in reraise + raise value + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 789, in urlopen + response = self._make_request( + File "/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py", line 495, in _make_request + conn.request( + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 96, in request + rval = super().request(method, url, body, headers, *args, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 441, in request + self.endheaders() + File "/usr/lib/python3.10/http/client.py", line 1278, in endheaders + self._send_output(message_body, encode_chunked=encode_chunked) + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 123, in _send_output + self.send(msg) + File "/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py", line 223, in send + return super().send(str) + File "/usr/lib/python3.10/http/client.py", line 976, in send + self.connect() + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 279, in connect + self.sock = self._new_conn() + File "/opt/venv/lib/python3.10/site-packages/urllib3/connection.py", line 206, in _new_conn + raise NameResolutionError(self.host, self, e) from e +urllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution) + +During handling of the above exception, another exception occurred: + +Traceback (most recent call last): + File "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", line 198, in cleanup_artifacts + delete_many_from_s3(cellxgene_bucket, object_key + ".cxg/") + File "/single-cell-data-portal/backend/common/utils/aws.py", line 107, in delete_many_from_s3 + bucket.objects.filter(Prefix=f"{prefix}").delete() + File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 555, in batch_action + return action(self, *args, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py", line 134, in __call__ + for page in parent.pages(): + File "/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py", line 169, in pages + for page in pages: + File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 269, in __iter__ + response = self._make_request(current_kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/paginate.py", line 357, in _make_request + return self._method(**current_kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 569, in _api_call + return self._make_api_call(operation_name, kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1005, in _make_api_call + http, parsed_response = self._make_request( + File "/opt/venv/lib/python3.10/site-packages/botocore/client.py", line 1029, in _make_request + return self._endpoint.make_request(operation_model, request_dict) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 119, in make_request + return self._send_request(request_dict, operation_model) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 200, in _send_request + while self._needs_retry( + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 360, in _needs_retry + responses = self._event_emitter.emit( + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 412, in emit + return self._emitter.emit(aliased_event_name, **kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 256, in emit + return self._emit(event_name, kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/hooks.py", line 239, in _emit + response = handler(**kwargs) + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 207, in __call__ + if self._checker(**checker_kwargs): + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 284, in __call__ + should_retry = self._should_retry( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 320, in _should_retry + return self._checker(attempt_number, response, caught_exception) + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 363, in __call__ + checker_response = checker( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 247, in __call__ + return self._check_caught_exception( + File "/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py", line 416, in _check_caught_exception + raise caught_exception + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 279, in _do_get_response + http_response = self._send(request) + File "/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py", line 383, in _send + return self.http_session.send(request) + File "/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py", line 493, in send + raise EndpointConnectionError(endpoint_url=request.url, error=e) +botocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: "http://localstack:4566/cellxgene-bucket?prefix=123.cxg%2F&encoding-type=url" \ No newline at end of file diff --git a/22255/data/attachments/70807e58cb08c551.txt b/22255/data/attachments/70807e58cb08c551.txt new file mode 100644 index 000000000000..54659a552308 --- /dev/null +++ b/22255/data/attachments/70807e58cb08c551.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:19:30.007Z", "name": "backend.layers.business.business", "message": "Restoring previous dataset version", "lineno": 1329, "pathname": "/single-cell-data-portal/backend/layers/business/business.py", "dataset_id": "c5c38c17-81c7-406a-8b75-4f8a4eb8c1a5", "replace_version_id": "700db200-ff65-47a7-b538-7462ab288df5", "restored_version_id": "b1621c86-70b8-433e-abbd-fff5d4d0dc45"} +{"levelname": "INFO", "asctime": "2024-10-07T20:19:30.007Z", "name": "backend.layers.business.business", "message": "Restoring previous dataset version", "lineno": 1329, "pathname": "/single-cell-data-portal/backend/layers/business/business.py", "dataset_id": "41bc5c8c-bf05-4a23-9cf7-b1eed546ff6f", "replace_version_id": "6495d847-c2eb-4023-9d8a-ab802b732710", "restored_version_id": "967fea8a-3053-4d9a-8c1d-4de4cdee73c7"} diff --git a/22255/data/attachments/708c848d021fefbf.txt b/22255/data/attachments/708c848d021fefbf.txt new file mode 100644 index 000000000000..4dcd2d806215 --- /dev/null +++ b/22255/data/attachments/708c848d021fefbf.txt @@ -0,0 +1,3 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:21.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "62c4113f-f346-4dbc-a7c9-de0a42a00dc7", "type": "REQUEST", "details": {"url": "/curation/v1/collections", "method": "GET", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:21.007Z", "name": "root", "message": "", "lineno": 42, "pathname": "/single-cell-data-portal/backend/curation/api/v1/curation/collections/actions.py", "request_id": "62c4113f-f346-4dbc-a7c9-de0a42a00dc7", "is_published": false, "owner": "test_user_id"} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:21.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "62c4113f-f346-4dbc-a7c9-de0a42a00dc7", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 1795, "response_time": 0.002966165542602539}} diff --git a/22255/data/attachments/70a408ea438f44ac.txt b/22255/data/attachments/70a408ea438f44ac.txt new file mode 100644 index 000000000000..430d3ef425fd --- /dev/null +++ b/22255/data/attachments/70a408ea438f44ac.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:45.007Z", "name": "corpora-api-wmg-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "1deea01e-6b26-4572-9d55-20607d2d2f61", "type": "REQUEST", "details": {"url": "/wmg/v2/query", "method": "POST", "content_length": 154}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:45.007Z", "name": "corpora-api-wmg-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "1deea01e-6b26-4572-9d55-20607d2d2f61", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 8427, "response_time": 0.05298662185668945}} diff --git a/22255/data/attachments/71ddf1dc10ff1f6e.txt b/22255/data/attachments/71ddf1dc10ff1f6e.txt new file mode 100644 index 000000000000..441e394839c9 --- /dev/null +++ b/22255/data/attachments/71ddf1dc10ff1f6e.txt @@ -0,0 +1,6 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:18:37.007Z", "name": "root", "message": "", "lineno": 22, "pathname": "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py", "dataset_version_id": "123", "collection_version_id": "456", "error": {}, "execution_id": "arn:aws:states:us-west-2:migrate_123456789012:execution:MyStateMachine"} +{"levelname": "INFO", "asctime": "2024-10-07T20:18:37.007Z", "name": "root", "message": "Skipping slack notification for arn:aws:states:us-west-2:migrate_123456789012:execution:MyStateMachine because failure is related to a schema migration", "lineno": 33, "pathname": "/single-cell-data-portal/backend/layers/processing/upload_failures/app.py"} +{"levelname": "ERROR", "asctime": "2024-10-07T20:18:44.007Z", "name": "processing", "message": "Failed to update dataset processing status", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 199, in _new_conn\n sock = connection.create_connection(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py\", line 60, in create_connection\n for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):\n File \"/usr/lib/python3.10/socket.py\", line 967, in getaddrinfo\n for res in _socket.getaddrinfo(host, port, family, type, proto, flags):\nsocket.gaierror: [Errno -3] Temporary failure in name resolution\n\nThe above exception was the direct cause of the following exception:\n\nTraceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 464, in send\n urllib_response = conn.urlopen(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 843, in urlopen\n retries = retries.increment(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py\", line 449, in increment\n raise reraise(type(error), error, _stacktrace)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py\", line 39, in reraise\n raise value\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 789, in urlopen\n response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 495, in _make_request\n conn.request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 96, in request\n rval = super().request(method, url, body, headers, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 441, in request\n self.endheaders()\n File \"/usr/lib/python3.10/http/client.py\", line 1278, in endheaders\n self._send_output(message_body, encode_chunked=encode_chunked)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 123, in _send_output\n self.send(msg)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 223, in send\n return super().send(str)\n File \"/usr/lib/python3.10/http/client.py\", line 976, in send\n self.connect()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 279, in connect\n self.sock = self._new_conn()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 206, in _new_conn\n raise NameResolutionError(self.host, self, e) from e\nurllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution)\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 87, in update_dataset_processing_status_to_failed\n get_business_logic().update_dataset_version_status(\n File \"/single-cell-data-portal/backend/portal/api/providers.py\", line 18, in get_business_logic\n DatabaseProvider(),\n File \"/single-cell-data-portal/backend/layers/persistence/persistence.py\", line 57, in __init__\n database_uri = CorporaDbConfig().database_uri\n File \"/single-cell-data-portal/backend/common/utils/secret_config.py\", line 54, in __getattr__\n self.load()\n File \"/single-cell-data-portal/backend/common/utils/secret_config.py\", line 88, in load\n self.load_from_aws()\n File \"/single-cell-data-portal/backend/common/utils/secret_config.py\", line 99, in load_from_aws\n secret = AwsSecret(secret_path)\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 31, in __init__\n self._load()\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 76, in _load\n response = self.secrets_mgr.describe_secret(SecretId=self.name)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 569, in _api_call\n return self._make_api_call(operation_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1005, in _make_api_call\n http, parsed_response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1029, in _make_request\n return self._endpoint.make_request(operation_model, request_dict)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 119, in make_request\n return self._send_request(request_dict, operation_model)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 200, in _send_request\n while self._needs_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 360, in _needs_retry\n responses = self._event_emitter.emit(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 412, in emit\n return self._emitter.emit(aliased_event_name, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 256, in emit\n return self._emit(event_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 239, in _emit\n response = handler(**kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 207, in __call__\n if self._checker(**checker_kwargs):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 284, in __call__\n should_retry = self._should_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 320, in _should_retry\n return self._checker(attempt_number, response, caught_exception)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 363, in __call__\n checker_response = checker(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 247, in __call__\n return self._check_caught_exception(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 416, in _check_caught_exception\n raise caught_exception\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 279, in _do_get_response\n http_response = self._send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 383, in _send\n return self.http_session.send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 493, in send\n raise EndpointConnectionError(endpoint_url=request.url, error=e)\nbotocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: \"http://localstack:4566/\""} +{"levelname": "ERROR", "asctime": "2024-10-07T20:18:51.007Z", "name": "processing", "message": "Failed to clean up artifacts.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 199, in _new_conn\n sock = connection.create_connection(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py\", line 60, in create_connection\n for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):\n File \"/usr/lib/python3.10/socket.py\", line 967, in getaddrinfo\n for res in _socket.getaddrinfo(host, port, family, type, proto, flags):\nsocket.gaierror: [Errno -3] Temporary failure in name resolution\n\nThe above exception was the direct cause of the following exception:\n\nTraceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 464, in send\n urllib_response = conn.urlopen(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 843, in urlopen\n retries = retries.increment(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py\", line 449, in increment\n raise reraise(type(error), error, _stacktrace)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py\", line 39, in reraise\n raise value\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 789, in urlopen\n response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 495, in _make_request\n conn.request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 96, in request\n rval = super().request(method, url, body, headers, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 441, in request\n self.endheaders()\n File \"/usr/lib/python3.10/http/client.py\", line 1278, in endheaders\n self._send_output(message_body, encode_chunked=encode_chunked)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 123, in _send_output\n self.send(msg)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 223, in send\n return super().send(str)\n File \"/usr/lib/python3.10/http/client.py\", line 976, in send\n self.connect()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 279, in connect\n self.sock = self._new_conn()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 206, in _new_conn\n raise NameResolutionError(self.host, self, e) from e\nurllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution)\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 192, in cleanup_artifacts\n delete_many_from_s3(artifact_bucket, object_key + \"/\")\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 107, in delete_many_from_s3\n bucket.objects.filter(Prefix=f\"{prefix}\").delete()\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 555, in batch_action\n return action(self, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py\", line 134, in __call__\n for page in parent.pages():\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 169, in pages\n for page in pages:\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 269, in __iter__\n response = self._make_request(current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 357, in _make_request\n return self._method(**current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 569, in _api_call\n return self._make_api_call(operation_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1005, in _make_api_call\n http, parsed_response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1029, in _make_request\n return self._endpoint.make_request(operation_model, request_dict)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 119, in make_request\n return self._send_request(request_dict, operation_model)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 200, in _send_request\n while self._needs_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 360, in _needs_retry\n responses = self._event_emitter.emit(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 412, in emit\n return self._emitter.emit(aliased_event_name, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 256, in emit\n return self._emit(event_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 239, in _emit\n response = handler(**kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 207, in __call__\n if self._checker(**checker_kwargs):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 284, in __call__\n should_retry = self._should_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 320, in _should_retry\n return self._checker(attempt_number, response, caught_exception)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 363, in __call__\n checker_response = checker(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 247, in __call__\n return self._check_caught_exception(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 416, in _check_caught_exception\n raise caught_exception\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 279, in _do_get_response\n http_response = self._send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 383, in _send\n return self.http_session.send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 493, in send\n raise EndpointConnectionError(endpoint_url=request.url, error=e)\nbotocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: \"http://localstack:4566/artifact-bucket?prefix=123%2F&encoding-type=url\""} +{"levelname": "ERROR", "asctime": "2024-10-07T20:18:51.007Z", "name": "processing", "message": "Failed to clean up datasets.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 194, in cleanup_artifacts\n datasets_bucket = os.environ[\"DATASETS_BUCKET\"]\n File \"/usr/lib/python3.10/os.py\", line 680, in __getitem__\n raise KeyError(key) from None\nKeyError: 'DATASETS_BUCKET'"} +{"levelname": "ERROR", "asctime": "2024-10-07T20:19:02.007Z", "name": "processing", "message": "Failed to clean up cxgs.", "lineno": 41, "pathname": "/single-cell-data-portal/backend/layers/processing/logger.py", "exc_info": "Traceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 199, in _new_conn\n sock = connection.create_connection(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/connection.py\", line 60, in create_connection\n for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):\n File \"/usr/lib/python3.10/socket.py\", line 967, in getaddrinfo\n for res in _socket.getaddrinfo(host, port, family, type, proto, flags):\nsocket.gaierror: [Errno -3] Temporary failure in name resolution\n\nThe above exception was the direct cause of the following exception:\n\nTraceback (most recent call last):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 464, in send\n urllib_response = conn.urlopen(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 843, in urlopen\n retries = retries.increment(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/retry.py\", line 449, in increment\n raise reraise(type(error), error, _stacktrace)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/util/util.py\", line 39, in reraise\n raise value\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 789, in urlopen\n response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connectionpool.py\", line 495, in _make_request\n conn.request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 96, in request\n rval = super().request(method, url, body, headers, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 441, in request\n self.endheaders()\n File \"/usr/lib/python3.10/http/client.py\", line 1278, in endheaders\n self._send_output(message_body, encode_chunked=encode_chunked)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 123, in _send_output\n self.send(msg)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/awsrequest.py\", line 223, in send\n return super().send(str)\n File \"/usr/lib/python3.10/http/client.py\", line 976, in send\n self.connect()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 279, in connect\n self.sock = self._new_conn()\n File \"/opt/venv/lib/python3.10/site-packages/urllib3/connection.py\", line 206, in _new_conn\n raise NameResolutionError(self.host, self, e) from e\nurllib3.exceptions.NameResolutionError: : Failed to resolve 'localstack' ([Errno -3] Temporary failure in name resolution)\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"/single-cell-data-portal/backend/layers/processing/upload_failures/app.py\", line 198, in cleanup_artifacts\n delete_many_from_s3(cellxgene_bucket, object_key + \".cxg/\")\n File \"/single-cell-data-portal/backend/common/utils/aws.py\", line 107, in delete_many_from_s3\n bucket.objects.filter(Prefix=f\"{prefix}\").delete()\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 555, in batch_action\n return action(self, *args, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/action.py\", line 134, in __call__\n for page in parent.pages():\n File \"/opt/venv/lib/python3.10/site-packages/boto3/resources/collection.py\", line 169, in pages\n for page in pages:\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 269, in __iter__\n response = self._make_request(current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/paginate.py\", line 357, in _make_request\n return self._method(**current_kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 569, in _api_call\n return self._make_api_call(operation_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1005, in _make_api_call\n http, parsed_response = self._make_request(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/client.py\", line 1029, in _make_request\n return self._endpoint.make_request(operation_model, request_dict)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 119, in make_request\n return self._send_request(request_dict, operation_model)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 200, in _send_request\n while self._needs_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 360, in _needs_retry\n responses = self._event_emitter.emit(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 412, in emit\n return self._emitter.emit(aliased_event_name, **kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 256, in emit\n return self._emit(event_name, kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/hooks.py\", line 239, in _emit\n response = handler(**kwargs)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 207, in __call__\n if self._checker(**checker_kwargs):\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 284, in __call__\n should_retry = self._should_retry(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 320, in _should_retry\n return self._checker(attempt_number, response, caught_exception)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 363, in __call__\n checker_response = checker(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 247, in __call__\n return self._check_caught_exception(\n File \"/opt/venv/lib/python3.10/site-packages/botocore/retryhandler.py\", line 416, in _check_caught_exception\n raise caught_exception\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 279, in _do_get_response\n http_response = self._send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/endpoint.py\", line 383, in _send\n return self.http_session.send(request)\n File \"/opt/venv/lib/python3.10/site-packages/botocore/httpsession.py\", line 493, in send\n raise EndpointConnectionError(endpoint_url=request.url, error=e)\nbotocore.exceptions.EndpointConnectionError: Could not connect to the endpoint URL: \"http://localstack:4566/cellxgene-bucket?prefix=123.cxg%2F&encoding-type=url\""} diff --git a/22178/data/attachments/7f8bb38b536359be.txt b/22255/data/attachments/726e7fe0212b5ba.txt similarity index 100% rename from 22178/data/attachments/7f8bb38b536359be.txt rename to 22255/data/attachments/726e7fe0212b5ba.txt diff --git a/22255/data/attachments/72b75e4875264812.txt b/22255/data/attachments/72b75e4875264812.txt new file mode 100644 index 000000000000..5c68679929bb --- /dev/null +++ b/22255/data/attachments/72b75e4875264812.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:20.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "b7f6bc22-0ca4-4f6e-8900-e29a5fccc2d5", "type": "REQUEST", "details": {"url": "/", "method": "GET", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:20.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "b7f6bc22-0ca4-4f6e-8900-e29a5fccc2d5", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 314, "response_time": 0.0003056526184082031}} diff --git a/22255/data/attachments/73ec47d63a71741c.txt 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root:h5ad_data_file.py:68 Beginning writing to CXG. +INFO root:h5ad_data_file.py:72 ...group created, with name /single-cell-data-portal/tests/unit/backend/fixtures/46dae8e4-c950-449c-bc5e-211ad91d8cd3.cxg +INFO root:h5ad_data_file.py:77 ...dataset metadata saved +INFO root:h5ad_data_file.py:80 ...dataset obs dataframe saved +INFO root:h5ad_data_file.py:83 ...dataset var dataframe saved +INFO root:h5ad_data_file.py:86 ...dataset uns dataframe saved +INFO root:h5ad_data_file.py:142 .../single-cell-data-portal/tests/unit/backend/fixtures/46dae8e4-c950-449c-bc5e-211ad91d8cd3.cxg/emb/awesome_embedding embedding created +INFO root:h5ad_data_file.py:89 ...dataset embeddings saved +INFO root:h5ad_data_file.py:101 is_sparse: False +INFO root:cxg_generation_utils.py:217 create /single-cell-data-portal/tests/unit/backend/fixtures/46dae8e4-c950-449c-bc5e-211ad91d8cd3.cxg/X +INFO root:h5ad_data_file.py:106 start consolidating +INFO root:h5ad_data_file.py:92 ...dataset X matrix saved +INFO root:h5ad_data_file.py:94 Completed writing to CXG. \ No newline at end of file diff --git a/22255/data/attachments/a051eefb54111b9f.txt b/22255/data/attachments/a051eefb54111b9f.txt new file mode 100644 index 000000000000..f85561364f54 --- /dev/null +++ b/22255/data/attachments/a051eefb54111b9f.txt @@ -0,0 +1 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:19:25.007Z", "name": "root", "message": "Matrix is not sparse. 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you need an Agent running on 7.39.1 version or above. +Check Your Remote Config environment variables on your Agent: +DD_REMOTE_CONFIGURATION_ENABLED=true +See: https://docs.datadoghq.com/agent/guide/how_remote_config_works/, 5 additional messages skipped +{"levelname": "DEBUG", "asctime": "2024-10-07T20:18:04.007Z", "name": "ddtrace.internal.remoteconfig.worker", "message": "Agent is down or Remote Config is not enabled in the Agent\nCheck your Agent version, you need an Agent running on 7.39.1 version or above.\nCheck Your Remote Config environment variables on your Agent:\nDD_REMOTE_CONFIGURATION_ENABLED=true\nSee: https://docs.datadoghq.com/agent/guide/how_remote_config_works/, 5 additional messages skipped", "lineno": 53, "pathname": "/usr/local/lib/python3.10/dist-packages/ddtrace/internal/remoteconfig/worker.py", "request_id": ""} diff --git a/22255/data/attachments/bfea6ba2d240987.txt b/22255/data/attachments/bfea6ba2d240987.txt new file mode 100644 index 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b/22255/data/attachments/c2097711b887d218.txt @@ -0,0 +1,16 @@ +INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 7a7dcc71-5ce4-417a-804e-f0bf81edf0fa, 'url': 'http://fake.url', 'current_dataset_version_id': None} +INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 7a7dcc71-5ce4-417a-804e-f0bf81edf0fa, 'url': None, 'current_dataset_version_id': d028eaee-769e-4e86-9d13-8e7b54c5b3eb} +INFO processing:dataset_metadata_update.py:333 Main: No raw h5ad update required +INFO processing:process_logic.py:45 Updating processing status +INFO processing:process_logic.py:45 Updating processing status +INFO processing:logger.py:26 Start create_artifact +INFO processing:process_logic.py:45 Updating processing status +INFO processing:process_logic.py:91 Uploaded [c3fb5b17-a034-4fc0-8d55-043c31e4e4dd/raw.h5ad] to s3://artifact_bucket/c3fb5b17-a034-4fc0-8d55-043c31e4e4dd/raw.h5ad +INFO processing:process_logic.py:93 Updated database with raw_h5ad. +INFO processing:process_logic.py:45 Updating processing status +INFO processing:logger.py:28 Complete create_artifact +INFO processing:process_logic.py:45 Updating processing status +INFO processing:dataset_metadata_update.py:337 Main: Starting thread for h5ad update +INFO processing:process_logic.py:45 Updating processing status +INFO processing:dataset_metadata_update.py:380 Main: Starting thread for cxg update +INFO processing:process_logic.py:45 Updating processing status \ No newline at end of file diff --git a/22255/data/attachments/c25dddbeedbaaead.txt b/22255/data/attachments/c25dddbeedbaaead.txt new file mode 100644 index 000000000000..a48cccf1dabb --- /dev/null +++ b/22255/data/attachments/c25dddbeedbaaead.txt @@ -0,0 +1,3 @@ +{"levelname": "WARNING", "asctime": "2024-10-07T20:19:30.007Z", "name": "root", "message": "Type float64 will be converted to 32 bit float and may lose precision.", "lineno": 155, "pathname": "/single-cell-data-portal/backend/layers/processing/utils/type_conversion_utils.py"} +{"levelname": "WARNING", "asctime": "2024-10-07T20:19:30.007Z", "name": "root", "message": "Type float64 will be converted to 32 bit float and may lose precision.", "lineno": 155, "pathname": "/single-cell-data-portal/backend/layers/processing/utils/type_conversion_utils.py"} +{"levelname": "WARNING", "asctime": "2024-10-07T20:19:30.007Z", "name": "root", "message": "Type float64 will be converted to 32 bit float and may lose precision.", "lineno": 155, "pathname": "/single-cell-data-portal/backend/layers/processing/utils/type_conversion_utils.py"} diff --git a/22255/data/attachments/c27d5ae05bad825e.txt b/22255/data/attachments/c27d5ae05bad825e.txt new file mode 100644 index 000000000000..2c85f2dd6c9f --- /dev/null +++ b/22255/data/attachments/c27d5ae05bad825e.txt @@ -0,0 +1 @@ +INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': 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'dataset_id': '3d113f37-adab-4745-8827-da24fffeef22', 'replace_version_id': '8fd30cf1-2b50-4309-ae58-fe12e04fecc0', 'restored_version_id': '3a51ab97-0213-4c00-a9cb-1440c4f3c514'} \ No newline at end of file diff --git a/22255/data/attachments/c4d867dad7af29db.txt b/22255/data/attachments/c4d867dad7af29db.txt new file mode 100644 index 000000000000..82c76812fd8a --- /dev/null +++ b/22255/data/attachments/c4d867dad7af29db.txt @@ -0,0 +1,13 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:19:25.007Z", "name": "backend.layers.business.business", "message": "ingesting dataset", "lineno": 553, "pathname": "/single-cell-data-portal/backend/layers/business/business.py", "collection_version_id": "3f31b207-2783-4c17-be17-8c2ead246c7f", "url": "https://www.dropbox.com/s/fake_location/test.h5ad?dl=0", "current_dataset_version_id": null} +{"levelname": "INFO", "asctime": "2024-10-07T20:19:25.007Z", "name": "processing", "message": "Start validate_h5ad_file_and_add_labels", "lineno": 26, 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diff --git a/22178/data/attachments/b59cda62f7e1b464.txt b/22255/data/attachments/d5b8e079daa43048.txt similarity index 100% rename from 22178/data/attachments/b59cda62f7e1b464.txt rename to 22255/data/attachments/d5b8e079daa43048.txt diff --git a/22255/data/attachments/d65bf295a64b9cd0.txt b/22255/data/attachments/d65bf295a64b9cd0.txt new file mode 100644 index 000000000000..6683be233769 --- /dev/null +++ b/22255/data/attachments/d65bf295a64b9cd0.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "6a18f826-2393-4121-abaa-dd2763d3f342", "type": "REQUEST", "details": {"url": "/dp/v1/auth/key", "method": "DELETE", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": 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processing:process_logic.py:45 Updating processing status +INFO processing:process_logic.py:45 Updating processing status +INFO processing:logger.py:26 Start create_artifact +INFO processing:process_logic.py:45 Updating processing status +INFO processing:process_logic.py:91 Uploaded [a4d0829e-0cc7-4503-b411-0f61c23e7410/raw.h5ad] to s3://artifact_bucket/a4d0829e-0cc7-4503-b411-0f61c23e7410/raw.h5ad +INFO processing:process_logic.py:93 Updated database with raw_h5ad. +INFO processing:process_logic.py:45 Updating processing status +INFO processing:logger.py:28 Complete create_artifact +INFO processing:process_logic.py:45 Updating processing status +INFO processing:dataset_metadata_update.py:337 Main: Starting thread for h5ad update +ERROR processing:dataset_metadata_update.py:374 Cannot find RDS artifact uri for 84e3987c-fcd7-48b1-a553-dcf65c45f184, and Conversion Status is not SKIPPED. +INFO processing:process_logic.py:45 Updating processing status +INFO 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create_deep_zoom_assets\n image_array, _ = self._fetch_image(content)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1114, in __call__\n return self._mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1118, in _mock_call\n return self._execute_mock_call(*args, **kwargs)\n File \"/usr/lib/python3.10/unittest/mock.py\", line 1173, in _execute_mock_call\n raise effect\nException: Test exception"} diff --git a/22255/data/attachments/e67932b870d9ba7b.txt b/22255/data/attachments/e67932b870d9ba7b.txt new file mode 100644 index 000000000000..8689259c7958 --- /dev/null +++ b/22255/data/attachments/e67932b870d9ba7b.txt @@ -0,0 +1 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:19:30.007Z", "name": "backend.layers.business.business", "message": "Restoring previous collection version", "lineno": 1365, "pathname": "/single-cell-data-portal/backend/layers/business/business.py", "collection_id": "713f860d-2e2e-4799-bc9e-80bad284de79", "replace_version_id": 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b/22255/data/attachments/f8135589d995cf4a.txt @@ -0,0 +1,2 @@ +INFO root:h5ad_data_file.py:185 Reading in AnnData dataset: 1cf85702-e9e0-4eda-b20d-95977a7e7393.h5ad +INFO root:h5ad_data_file.py:187 Completed reading in AnnData dataset! \ No newline at end of file diff --git a/22178/data/attachments/f490760c3efe2f20.txt b/22255/data/attachments/f81d42ab1727fbaa.txt similarity index 100% rename from 22178/data/attachments/f490760c3efe2f20.txt rename to 22255/data/attachments/f81d42ab1727fbaa.txt diff --git a/22255/data/attachments/f96d7ed662e9c852.txt b/22255/data/attachments/f96d7ed662e9c852.txt new file mode 100644 index 000000000000..945be8499c46 --- /dev/null +++ b/22255/data/attachments/f96d7ed662e9c852.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "c583b4f7-e44a-49ce-acbf-446e8dac466b", "type": "REQUEST", "details": {"url": "/curation/v1/auth/token", "method": "POST", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "c583b4f7-e44a-49ce-acbf-446e8dac466b", "type": "RESPONSE", "details": {"status_code": 201, "content_length": 27, "response_time": 0.00102996826171875}} diff --git a/22178/data/attachments/9caefac48ca8e5be.txt b/22255/data/attachments/f9d6476fba03b01.txt similarity index 100% rename from 22178/data/attachments/9caefac48ca8e5be.txt rename to 22255/data/attachments/f9d6476fba03b01.txt diff --git a/22255/data/attachments/fa0b673015a8e683.txt b/22255/data/attachments/fa0b673015a8e683.txt new file mode 100644 index 000000000000..d3a5f211acab --- /dev/null +++ b/22255/data/attachments/fa0b673015a8e683.txt @@ -0,0 +1 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:18:34.007Z", "name": "backend.layers.business.business", "message": "ingesting dataset", "lineno": 553, "pathname": "/single-cell-data-portal/backend/layers/business/business.py", "collection_version_id": "6e982a23-5ef0-4e98-90f7-26377704054e", "url": "http://fake.url", "current_dataset_version_id": null} diff --git a/22255/data/attachments/fa9264e273bfce3b.txt b/22255/data/attachments/fa9264e273bfce3b.txt new file mode 100644 index 000000000000..1d39c1b15584 --- /dev/null +++ b/22255/data/attachments/fa9264e273bfce3b.txt @@ -0,0 +1,17 @@ +INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': c6899d40-e787-4949-b6cc-3ad443a4531f, 'url': 'http://fake.url', 'current_dataset_version_id': None} +INFO backend.layers.business.business:business.py:553 {'message': 'ingesting dataset', 'collection_version_id': c6899d40-e787-4949-b6cc-3ad443a4531f, 'url': None, 'current_dataset_version_id': 9152fb76-9100-43dc-9158-24c2e435a367} +INFO processing:dataset_metadata_update.py:333 Main: No raw h5ad update required +INFO processing:process_logic.py:45 Updating processing status +INFO processing:process_logic.py:45 Updating processing status +INFO processing:logger.py:26 Start create_artifact +INFO processing:process_logic.py:45 Updating processing status +INFO processing:process_logic.py:91 Uploaded [223bd1b7-f158-4e33-938a-9d7a767fd8a7/raw.h5ad] to s3://artifact_bucket/223bd1b7-f158-4e33-938a-9d7a767fd8a7/raw.h5ad +INFO processing:process_logic.py:93 Updated database with raw_h5ad. +INFO processing:process_logic.py:45 Updating processing status +INFO processing:logger.py:28 Complete create_artifact +INFO processing:process_logic.py:45 Updating processing status +ERROR processing:dataset_metadata_update.py:353 Cannot find labeled H5AD artifact uri for 9152fb76-9100-43dc-9158-24c2e435a367. +INFO processing:process_logic.py:45 Updating processing status +INFO processing:dataset_metadata_update.py:357 Main: Starting thread 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"2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "InternalServerError", "lineno": 103, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "3a213eb9-1f46-4e23-9fe9-9cdaa4ed01dc", "exc_info": "Traceback (most recent call last):\n File \"/usr/local/lib/python3.10/dist-packages/flask/app.py\", line 1823, in full_dispatch_request\n rv = self.dispatch_request()\n File \"/usr/local/lib/python3.10/dist-packages/flask/app.py\", line 1799, in dispatch_request\n return self.ensure_sync(self.view_functions[rule.endpoint])(**view_args)\n File \"/usr/local/lib/python3.10/dist-packages/connexion/decorators/decorator.py\", line 68, in wrapper\n response = function(request)\n File \"/usr/local/lib/python3.10/dist-packages/connexion/decorators/uri_parsing.py\", line 149, in wrapper\n response = function(request)\n File \"/usr/local/lib/python3.10/dist-packages/connexion/decorators/validation.py\", line 399, in wrapper\n return function(request)\n File \"/usr/local/lib/python3.10/dist-packages/connexion/decorators/response.py\", line 112, in wrapper\n response = function(request)\n File \"/usr/local/lib/python3.10/dist-packages/connexion/decorators/parameter.py\", line 120, in wrapper\n return function(**kwargs)\n File \"/single-cell-data-portal/backend/portal/api/portal_api.py\", line 743, in get_dataset_asset\n raise ServerErrorHTTPException() from None\nbackend.common.utils.http_exceptions.ServerErrorHTTPException"} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:25.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "3a213eb9-1f46-4e23-9fe9-9cdaa4ed01dc", "type": "RESPONSE", "details": {"status_code": 500, "content_length": 159, "response_time": 0.002236604690551758}} diff --git a/22178/data/attachments/fd2c9bd37f177ee9.txt b/22255/data/attachments/fb8f23ae9766cba1.txt similarity index 100% rename from 22178/data/attachments/fd2c9bd37f177ee9.txt rename to 22255/data/attachments/fb8f23ae9766cba1.txt diff --git a/22255/data/attachments/fb9011f7dfd1c820.txt b/22255/data/attachments/fb9011f7dfd1c820.txt new file mode 100644 index 000000000000..1fc1f9f8ab63 --- /dev/null +++ b/22255/data/attachments/fb9011f7dfd1c820.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "e7097f6f-5f55-4dcc-b810-e7788618e85e", "type": "REQUEST", "details": {"url": "/dp/v1/collections/0a7f7a51-9e9c-4d6b-974b-471f27c37466", "method": "PUT", "content_length": 30}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "e7097f6f-5f55-4dcc-b810-e7788618e85e", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 408, "response_time": 0.0017006397247314453}} diff --git a/22255/data/attachments/fbb9bcaf462777f5.txt b/22255/data/attachments/fbb9bcaf462777f5.txt new file mode 100644 index 000000000000..b7cc688e8f57 --- /dev/null +++ b/22255/data/attachments/fbb9bcaf462777f5.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:21.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "859ffc87-61d5-4d29-9fad-353269e85e4c", "type": "REQUEST", "details": {"url": "/curation/v1/collections", "method": "GET", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:21.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "859ffc87-61d5-4d29-9fad-353269e85e4c", "type": "RESPONSE", "details": {"status_code": 403, "content_length": 132, "response_time": 0.0007481575012207031}} diff --git a/22255/data/attachments/fbcb67febdb0a961.txt b/22255/data/attachments/fbcb67febdb0a961.txt new file mode 100644 index 000000000000..1db429edcb3a --- /dev/null +++ b/22255/data/attachments/fbcb67febdb0a961.txt @@ -0,0 +1,4 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "8e348c74-74d9-468d-8b74-86ad109bc1cb", "type": "REQUEST", "details": {"url": "/dp/v1/collections/e5a4f3db-d8cb-44ea-8fc7-985d14f0c4fe/order-datasets", "method": "PUT", "content_length": 94}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "8e348c74-74d9-468d-8b74-86ad109bc1cb", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 0, "response_time": 0.004431247711181641}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "3a93e474-bb08-4af8-97ea-1c96398823c8", "type": "REQUEST", "details": {"url": "/dp/v1/collections/e5a4f3db-d8cb-44ea-8fc7-985d14f0c4fe", "method": "GET", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:24.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "3a93e474-bb08-4af8-97ea-1c96398823c8", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 8351, "response_time": 0.006425619125366211}} diff --git a/22255/data/attachments/fbeb2664b8e13261.txt b/22255/data/attachments/fbeb2664b8e13261.txt new file mode 100644 index 000000000000..c0a69cd9b854 --- /dev/null +++ b/22255/data/attachments/fbeb2664b8e13261.txt @@ -0,0 +1,3 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:21.007Z", "name": "corpora-api-test", "message": "", "lineno": 76, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "167caf6c-20b7-4755-be8f-ddde14f7ee50", "type": "REQUEST", "details": {"url": "/curation/v1/collections", "method": "GET", "content_length": null}} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:21.007Z", "name": "root", "message": "", "lineno": 42, "pathname": "/single-cell-data-portal/backend/curation/api/v1/curation/collections/actions.py", "request_id": "167caf6c-20b7-4755-be8f-ddde14f7ee50", "is_published": false, "owner": "test_user_id"} +{"levelname": "INFO", "asctime": "2024-10-07T20:17:21.007Z", "name": "corpora-api-test", "message": "", "lineno": 88, "pathname": "/single-cell-data-portal/backend/common/server/config.py", "request_id": "167caf6c-20b7-4755-be8f-ddde14f7ee50", "type": "RESPONSE", "details": {"status_code": 200, "content_length": 1640, "response_time": 0.0030138492584228516}} diff --git a/22255/data/attachments/fc0dfc480f1b9827.txt b/22255/data/attachments/fc0dfc480f1b9827.txt new file mode 100644 index 000000000000..bd426e5fbf2c --- /dev/null +++ b/22255/data/attachments/fc0dfc480f1b9827.txt @@ -0,0 +1,4 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:18:33.007Z", "name": "processing", "message": "Uploaded to S3", "lineno": 313, "pathname": "/single-cell-data-portal/backend/layers/processing/schema_migration.py", "file_name": "/tmp/pytest-of-root/pytest-0/test_create_migration_revision1/f941dd07-901a-4fc5-a29f-1eaf88702ea7.json", "bucket": "artifact-bucket", "key": "schema_migration/test-execution-arn/log_errors_and_cleanup/f941dd07-901a-4fc5-a29f-1eaf88702ea7.json"} +{"levelname": "INFO", "asctime": "2024-10-07T20:18:33.007Z", "name": "processing", "message": "Uploaded to S3", "lineno": 313, "pathname": "/single-cell-data-portal/backend/layers/processing/schema_migration.py", "file_name": "/tmp/pytest-of-root/pytest-0/test_create_migration_revision1/f941dd07-901a-4fc5-a29f-1eaf88702ea7.json", "bucket": "artifact-bucket", "key": "schema_migration/test-execution-arn/span_datasets/f941dd07-901a-4fc5-a29f-1eaf88702ea7.json"} +{"levelname": "INFO", "asctime": "2024-10-07T20:18:33.007Z", "name": "processing", "message": "Uploaded to S3", "lineno": 313, "pathname": "/single-cell-data-portal/backend/layers/processing/schema_migration.py", "file_name": "/tmp/pytest-of-root/pytest-0/test_create_migration_revision1/f941dd07-901a-4fc5-a29f-1eaf88702ea7.json", "bucket": "artifact-bucket", "key": "schema_migration/test-execution-arn/log_errors_and_cleanup/f941dd07-901a-4fc5-a29f-1eaf88702ea7.json"} +{"levelname": "INFO", "asctime": "2024-10-07T20:18:33.007Z", "name": "processing", "message": "Uploaded to S3", "lineno": 313, "pathname": "/single-cell-data-portal/backend/layers/processing/schema_migration.py", "file_name": "/tmp/pytest-of-root/pytest-0/test_create_migration_revision1/f941dd07-901a-4fc5-a29f-1eaf88702ea7.json", "bucket": "artifact-bucket", "key": "schema_migration/test-execution-arn/span_datasets/f941dd07-901a-4fc5-a29f-1eaf88702ea7.json"} diff --git a/22178/data/attachments/a5081aaa57167b02.txt b/22255/data/attachments/fc1f36f260f78ea0.txt similarity index 100% rename from 22178/data/attachments/a5081aaa57167b02.txt rename to 22255/data/attachments/fc1f36f260f78ea0.txt diff --git a/22255/data/attachments/fcef69f7a4e516f1.txt b/22255/data/attachments/fcef69f7a4e516f1.txt new file mode 100644 index 000000000000..7bc65bfeae05 --- /dev/null +++ b/22255/data/attachments/fcef69f7a4e516f1.txt @@ -0,0 +1 @@ +{"levelname": "WARNING", "asctime": "2024-10-07T20:19:25.007Z", "name": "matrix_utils", "message": "noncanonical data found in X; converting to canonical format using sum_duplicates.", "lineno": 71, 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{"status_code": 200, "content_length": 208, "response_time": 0.0039708614349365234}} diff --git a/22255/data/attachments/fe97305a8d362d68.txt b/22255/data/attachments/fe97305a8d362d68.txt new file mode 100644 index 000000000000..6ed91ab6a3f4 --- /dev/null +++ b/22255/data/attachments/fe97305a8d362d68.txt @@ -0,0 +1,2 @@ +INFO root:app.py:60 {'message': 's3_event', 'Records': [{'s3': {'bucket': {'name': 'some_bucket'}, 'object': {'key': 'super/dadd2b91-a2af-4e65-83f7-c0535a22540e/719ca00d-3169-4d05-92ed-396b0c5f63e4', 'size': 0}}}]} +INFO root:app.py:85 {'collection_owner': 'test_user_id', 'dataset_id': '719ca00d-3169-4d05-92ed-396b0c5f63e4'} \ No newline at end of file diff --git a/22255/data/attachments/feb3c79ef612a4cc.txt b/22255/data/attachments/feb3c79ef612a4cc.txt new file mode 100644 index 000000000000..6cbc1fcd2044 --- /dev/null +++ b/22255/data/attachments/feb3c79ef612a4cc.txt @@ -0,0 +1,2 @@ +{"levelname": "INFO", "asctime": "2024-10-07T20:17:21.007Z", "name": 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length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters5]","uid":"1128a8290b8c4af9","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370410,"stop":1728332370411,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters6]","uid":"80a441aeacdefa8f","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370416,"stop":1728332370416,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 0, 1, 2, 3,\n 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16,\n 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29,\n 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42,\n 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55,\n 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68,\n 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,\n 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94,\n 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107,\n 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120,\n 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133,\n 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146,\n 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159,\n 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172,\n 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185,\n 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198,\n 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211,\n 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224,\n 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237,\n 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250,\n 251, 252, 253, 254, 255, 0, 1, 2, 3, 4, 5, 6, 7,\n 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20,\n 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,\n 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,\n 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59,\n 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72,\n 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85,\n 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,\n 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111,\n 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124,\n 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137,\n 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150,\n 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163,\n 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176,\n 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189,\n 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202,\n 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215,\n 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228,\n 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241,\n 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254,\n 255, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11,\n 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,\n 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37,\n 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,\n 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,\n 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76,\n 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89,\n 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102,\n 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115,\n 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128,\n 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141,\n 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154,\n 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167,\n 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180,\n 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193,\n 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206,\n 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219,\n 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231],\n dtype=uint8), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters7]","uid":"22d051beb537720e","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370422,"stop":1728332370422,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 227\n996 228\n997 229\n998 230\n999 231\nLength: 1000, dtype: uint8, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters8]","uid":"c862ff068f63f055","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370425,"stop":1728332370426,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 222, 223, 224, 225, 226, 227, 228, 229, 230, 231],\n dtype='uint8', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters9]","uid":"4bf9faa042049dca","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370429,"stop":1728332370429,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters10]","uid":"8b7afdd900be2673","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370434,"stop":1728332370434,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=int16), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters11]","uid":"953b5f8e7acf94da","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370440,"stop":1728332370441,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int16, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters12]","uid":"4c02b04f408dd4f3","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370444,"stop":1728332370445,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int16', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters13]","uid":"bbd7bcdd41d5c7c3","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370448,"stop":1728332370448,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters14]","uid":"f8fead74c5c74acf","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370453,"stop":1728332370453,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint16), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters15]","uid":"da4a4a9d61c8deeb","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370459,"stop":1728332370459,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: uint16, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters16]","uid":"e36776bca7992a0b","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370463,"stop":1728332370463,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='uint16', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters17]","uid":"dcbad8270b74ab21","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370466,"stop":1728332370466,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters18]","uid":"18673d06a7d4fb52","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370471,"stop":1728332370472,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=int32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters19]","uid":"2d471f6d3cf67614","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370478,"stop":1728332370478,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int32, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters20]","uid":"5878210bba109ebd","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370481,"stop":1728332370482,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int32', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters21]","uid":"b5b192be12884d85","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370485,"stop":1728332370485,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters22]","uid":"d8e7713f8e16da6c","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370490,"stop":1728332370490,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters23]","uid":"11337a387d607956","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370496,"stop":1728332370496,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: uint32, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters24]","uid":"d7f35065e78010af","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370500,"stop":1728332370500,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='uint32', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters25]","uid":"9109263d4c4fa81","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370503,"stop":1728332370504,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters26]","uid":"1878543008e5985b","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370509,"stop":1728332370509,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999]), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters27]","uid":"2174088465b5ff9a","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370515,"stop":1728332370515,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int64, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters28]","uid":"c932500f62c68b69","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370519,"stop":1728332370519,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int64', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters29]","uid":"ae9e77fb171b2937","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370522,"stop":1728332370522,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters30]","uid":"587561a4e5dffcd6","parentUid":"b1a8273437954620fa374b796ffaacdd","status":"passed","time":{"start":1728332370527,"stop":1728332370528,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 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18, 19, 20, 21,\n 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32,\n 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43,\n 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54,\n 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,\n 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76,\n 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87,\n 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,\n 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109,\n 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120,\n 121, 122, 123, 124, 125, 126, 127, -128, -127, -126, -125,\n -124, -123, -122, -121, -120, -119, -118, -117, -116, -115, -114,\n -113, -112, -111, -110, -109, -108, -107, -106, -105, -104, -103,\n -102, -101, -100, -99, -98, -97, -96, -95, -94, -93, -92,\n -91, -90, -89, -88, -87, -86, -85, -84, -83, -82, -81,\n -80, -79, -78, -77, -76, -75, -74, -73, -72, -71, -70,\n -69, -68, -67, -66, -65, -64, -63, -62, -61, -60, -59,\n -58, -57, -56, -55, -54, -53, -52, -51, -50, -49, -48,\n -47, -46, -45, -44, -43, -42, -41, -40, -39, -38, -37,\n -36, 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-81, -80, -79, -78, -77, -76, -75, -74, -73,\n -72, -71, -70, -69, -68, -67, -66, -65, -64, -63, -62,\n -61, -60, -59, -58, -57, -56, -55, -54, -53, -52, -51,\n -50, -49, -48, -47, -46, -45, -44, -43, -42, -41, -40,\n -39, -38, -37, -36, -35, -34, -33, -32, -31, -30, -29,\n -28, -27, -26, -25, -24, -23, -22, -21, -20, -19, -18,\n -17, -16, -15, -14, -13, -12, -11, -10, -9, -8, -7,\n -6, -5, -4, -3, -2, -1, 0, 1, 2, 3, 4,\n 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,\n 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26,\n 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37,\n 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48,\n 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59,\n 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70,\n 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,\n 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92,\n 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,\n 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125,\n 126, 127, -128, -127, -126, -125, -124, -123, -122, -121, -120,\n -119, -118, -117, -116, -115, -114, -113, -112, -111, -110, -109,\n -108, -107, -106, -105, -104, -103, -102, -101, -100, -99, -98,\n -97, -96, -95, -94, -93, -92, -91, -90, -89, -88, -87,\n -86, -85, -84, -83, -82, -81, -80, -79, -78, -77, -76,\n -75, -74, -73, -72, -71, -70, -69, -68, -67, -66, -65,\n -64, -63, -62, -61, -60, -59, -58, -57, -56, -55, -54,\n -53, -52, -51, -50, -49, -48, -47, -46, -45, -44, -43,\n -42, -41, -40, -39, -38, -37, -36, -35, -34, -33, -32,\n -31, -30, -29, -28, -27, -26, -25, -24, -23, -22, -21,\n -20, -19, -18, -17, -16, -15, -14, -13, -12, -11, -10,\n -9, -8, -7, -6, -5, -4, -3, -2, -1, 0, 1,\n 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23,\n 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34,\n 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45,\n 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56,\n 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67,\n 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,\n 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89,\n 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100,\n 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111,\n 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122,\n 123, 124, 125, 126, 127, -128, -127, -126, -125, -124, -123,\n -122, -121, -120, -119, -118, -117, -116, -115, -114, -113, -112,\n -111, -110, -109, -108, -107, -106, -105, -104, -103, -102, -101,\n -100, -99, -98, -97, -96, -95, -94, -93, -92, -91, -90,\n -89, -88, -87, -86, -85, -84, -83, -82, -81, -80, -79,\n -78, -77, -76, -75, -74, -73, -72, -71, -70, -69, -68,\n -67, -66, -65, -64, -63, -62, -61, -60, -59, -58, -57,\n -56, -55, -54, -53, -52, -51, -50, -49, -48, -47, -46,\n -45, -44, -43, -42, -41, -40, -39, -38, -37, -36, -35,\n -34, -33, -32, -31, -30, -29, -28, -27, -26, -25],\n dtype=int8), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters3]","uid":"bd2efe314e8e26da","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370403,"stop":1728332370403,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ..\n995 -29\n996 -28\n997 -27\n998 -26\n999 -25\nLength: 1000, dtype: int8, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters4]","uid":"becc5e79c2a9bda","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370407,"stop":1728332370407,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n -34, -33, -32, -31, -30, -29, -28, -27, -26, -25],\n dtype='int8', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters5]","uid":"1128a8290b8c4af9","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370410,"stop":1728332370411,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters6]","uid":"80a441aeacdefa8f","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370416,"stop":1728332370416,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 0, 1, 2, 3,\n 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16,\n 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29,\n 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42,\n 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55,\n 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68,\n 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,\n 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94,\n 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107,\n 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120,\n 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133,\n 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146,\n 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159,\n 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172,\n 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185,\n 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198,\n 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211,\n 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224,\n 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237,\n 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250,\n 251, 252, 253, 254, 255, 0, 1, 2, 3, 4, 5, 6, 7,\n 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20,\n 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,\n 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,\n 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59,\n 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72,\n 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85,\n 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,\n 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111,\n 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124,\n 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137,\n 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150,\n 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163,\n 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176,\n 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189,\n 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202,\n 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215,\n 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228,\n 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241,\n 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254,\n 255, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11,\n 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,\n 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37,\n 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,\n 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,\n 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76,\n 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89,\n 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102,\n 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115,\n 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128,\n 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141,\n 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154,\n 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167,\n 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180,\n 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193,\n 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206,\n 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219,\n 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231],\n dtype=uint8), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters7]","uid":"22d051beb537720e","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370422,"stop":1728332370422,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 227\n996 228\n997 229\n998 230\n999 231\nLength: 1000, dtype: uint8, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters8]","uid":"c862ff068f63f055","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370425,"stop":1728332370426,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 222, 223, 224, 225, 226, 227, 228, 229, 230, 231],\n dtype='uint8', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters9]","uid":"4bf9faa042049dca","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370429,"stop":1728332370429,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters10]","uid":"8b7afdd900be2673","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370434,"stop":1728332370434,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=int16), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters11]","uid":"953b5f8e7acf94da","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370440,"stop":1728332370441,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int16, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters12]","uid":"4c02b04f408dd4f3","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370444,"stop":1728332370445,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int16', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters13]","uid":"bbd7bcdd41d5c7c3","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370448,"stop":1728332370448,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters14]","uid":"f8fead74c5c74acf","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370453,"stop":1728332370453,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint16), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters15]","uid":"da4a4a9d61c8deeb","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370459,"stop":1728332370459,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: uint16, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters16]","uid":"e36776bca7992a0b","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370463,"stop":1728332370463,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='uint16', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters17]","uid":"dcbad8270b74ab21","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370466,"stop":1728332370466,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters18]","uid":"18673d06a7d4fb52","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370471,"stop":1728332370472,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=int32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters19]","uid":"2d471f6d3cf67614","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370478,"stop":1728332370478,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int32, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters20]","uid":"5878210bba109ebd","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370481,"stop":1728332370482,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int32', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters21]","uid":"b5b192be12884d85","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370485,"stop":1728332370485,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters22]","uid":"d8e7713f8e16da6c","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370490,"stop":1728332370490,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters23]","uid":"11337a387d607956","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370496,"stop":1728332370496,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: uint32, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters24]","uid":"d7f35065e78010af","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370500,"stop":1728332370500,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='uint32', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters25]","uid":"9109263d4c4fa81","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370503,"stop":1728332370504,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters26]","uid":"1878543008e5985b","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370509,"stop":1728332370509,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999]), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters27]","uid":"2174088465b5ff9a","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370515,"stop":1728332370515,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int64, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters28]","uid":"c932500f62c68b69","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370519,"stop":1728332370519,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int64', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters29]","uid":"ae9e77fb171b2937","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370522,"stop":1728332370522,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters30]","uid":"587561a4e5dffcd6","parentUid":"d9286f96f847b733843d3f5d189d0a6b","status":"passed","time":{"start":1728332370527,"stop":1728332370528,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint64), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 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}"],"tags":[]}],"uid":"d9286f96f847b733843d3f5d189d0a6b"}],"uid":"9f8e82f14f7da08f327224bb8696a9c5"}],"uid":"tests.unit"}],"name":"packages"} \ No newline at end of file diff --git a/22255/data/suites.csv b/22255/data/suites.csv new file mode 100644 index 000000000000..ace0bd37dffd --- /dev/null +++ b/22255/data/suites.csv @@ -0,0 +1,1532 @@ +"Status","Start Time","Stop Time","Duration in ms","Parent Suite","Suite","Sub Suite","Test Class","Test Method","Name","Description" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","15","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_get_all_collections_published_does_not_retrieve_old_versions"," + `get_collections` with is_published=True should not return versions that were previously + published but have a new version + " +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","17","tests.unit.backend.layers.api","test_curation_api","TestDeleteDataset","","","test__delete_dataset_by_canonical_id"," + Calling DELETE /collections/:collection_id/datasets/:dataset_id should work according to the + auth token passed and when using canonical ids. In this case, the unpublished collection + version will be looked up and used for deletion. + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","19","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_update_crossref_metadata_changed_doi_returns_doi_update_ok"," + The check for changes in Crossref returns the existing DOI and the returned Crossref DOI if there is a + change between the two. + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","14","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__delete_uploaded_dataset__ok","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","23","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_all_user_collections_for_index"," + The `my-collections/index` endpoint should return all public collections and the private + collections the user has WRITE access to. Curators can see all public collectoins and private collections where + they are the owner. Super Curators can see all public and private collections. + " +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","0","tests.unit.backend.common","test_common","","","","test_remove_duplicate_dataset_assets","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","3","tests.unit.processing.schema_migration","test_log_errors_and_cleanup","TestLogErrorsAndCleanup","","","test_OK","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","9","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__delete_public_dataset_returns__405","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","5","tests.unit.backend.layers.api","test_curation_api","TestS3Credentials","","","test__generate_s3_credentials__by_collection_version_id","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","1","tests.unit.backend.layers.common","test_validation","","","","test_invalid_characters_in_field[text\x01]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[raw_data-http://somewhere.org/path/?abcd=123]","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","5","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__new_dataset_version_bad_processing_status","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_missing_data_submission_policy_version__400"," + Checks for failure on missing data submission policy version. + " +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","14","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_public_collection__OK","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_private_datasets_400","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","2","tests.unit.backend.layers.business","test_business","TestUpdateCollection","","","test_update_collection_same_doi"," + A collection updated with the same DOI should not trigger a Crossref call + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters81]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters26]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters35]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters53]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_rejects_invalid_consortia","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","3","tests.unit.processing","test_spatial_assets_utils","","","","test__create_deep_zoom_assets_exception","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","14","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_with_auth__OK_3","The 'revising_in' attribute is equal to the id of the revision Collection" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","17","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__can_retrieve_created_collection","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","12","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__invalid_artifact_status","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","2","tests.unit.processing","test_dataset_submissions","TestDatasetSubmissions","","","test__missing_collection_id__raises_error","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","11","tests.unit.backend.layers.api","test_portal_api","TestCollectionPutUploadLink","","","test__reupload_published_dataset_during_revision__202"," + Reupload a published dataset during a revision + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[data_source-https://www.google.com]","" +"passed","Mon Oct 07 20:18:35 GMT 2024","Mon Oct 07 20:18:35 GMT 2024","1","tests.unit.processing","test_dataset_submissions","TestDatasetSubmissions","","","test__nonexistent_dataset__raises_error","" +"passed","Mon Oct 07 20:17:20 GMT 2024","Mon Oct 07 20:17:20 GMT 2024","7","tests.unit.backend.layers.api","test_app","TestAPI","","","test__curation_api_swagger_ui__returns_200","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_fails_with_extra_fields","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters38]","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","13","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_only_private_collections_with_auth__OK","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","0","tests.unit.processing","test_matrix_utils","TestMatrixUtils","","","test__is_matrix_sparse__partially_populated_sparse_matrix_returns_true","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__doi_is_not_CURIE_reference__BAD_REQUEST","" +"passed","Mon Oct 07 20:18:11 GMT 2024","Mon Oct 07 20:18:11 GMT 2024","229","tests.unit.backend.wmg","test_query","QueryPrimaryFilterDimensionsTest","","","test__multiple_dimensions__returns_all_dimensions_and_terms_as_tuples","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_ignores_metadata_if_crossref_exception","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestAuthToken","","","test__post_token__404","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_with_auth__OK_6","revision_of contains None if the collection is unpublished" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_dataset_asset__dataset_NOT_FOUND","" +"passed","Mon Oct 07 20:17:46 GMT 2024","Mon Oct 07 20:17:46 GMT 2024","169","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_total_cell_count_per_cell_type","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","3","tests.unit.backend.layers.api","test_version","TestVersion","","","test_get","" +"passed","Mon Oct 07 20:18:35 GMT 2024","Mon Oct 07 20:18:35 GMT 2024","1","tests.unit.processing","test_extract_metadata","TestProcessingValidate","","","test_get_spatial_metadata__is_single_true_and_fullres_false","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters28]","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","0","tests.unit.processing","test_process_download","","","","test_remove_prefix","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters41]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_returns_id_on_success","" +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","2","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_throws_exception_if_request_fails_with_non_2xx_code"," + Asserts a CrossrefFetchException if the GET request return a 500 error (any non 2xx will work) + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","11","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_order__OK","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","1","tests.unit.processing.schema_migration","test_publish_revisions","TestPublishRevisions","","","test_check_datasets_fail_status","Check datasets when one of the dataset has failed during the ingestion process." +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","10","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_cleanup_occurs_after_publication_of_private_collection"," + Outdated, unused Dataset assets and rows in private Collection not deleted until after Collection is published + " +"passed","Mon Oct 07 20:17:47 GMT 2024","Mon Oct 07 20:17:47 GMT 2024","14","tests.unit.backend.wmg.data","test_snapshot","","","","test_get_wmg_snapshot_fullpath[/tmp]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[doi-google.com]","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","15","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_nonexistent_collection__4xx","" +"passed","Mon Oct 07 20:17:44 GMT 2024","Mon Oct 07 20:17:45 GMT 2024","523","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_no_genes__returns_200_and_correct_response","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","1","tests.unit.processing","test_handle_error","TestCleanupArtifacts","","","test_cleanup_artifacts__not_download_validate","Check that file in the artifact bucket are not delete if error_step is not download-validate." +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","1","tests.unit.processing.schema_migration","test_gather_collections","TestGatherCollections","","","test_with_published","" +"passed","Mon Oct 07 20:17:44 GMT 2024","Mon Oct 07 20:17:44 GMT 2024","209","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__primary_filter_dimensions__returns_valid_response_body","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__doi__OK","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","2","tests.unit.processing.schema_migration","test_log_errors_and_cleanup","TestLogErrorsAndCleanup","","","test_skip_unprocessed_datasets"," + Test that datasets that do not appear in the processed_datasets variable in log_errors_and_cleanup are skipped + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","15","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_revision_crossref_checked_ok"," + Crossref should be called to check for updates to the publisher metadata when publishing + a revision that has a DOI. + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","1","tests.unit.backend.layers.common","test_validation","","","","test_invalid_email[@place.com]","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","12","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_published_collection_verify_body_is_reshaped_correctly__OK","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters33]","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","12","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_revision_same_doi_publisher_metadata_updated_ok"," + When publishing a revision - and there is no change in DOI - publisher metadata should be updated + if the deposited date is after the revised at or published at date of the corresponding collection. + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","2","tests.unit.backend.layers.business","test_business","TestSetPreviousDatasetVersion","","","test_private_with_no_previous_version","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","0","tests.unit.backend.layers.utils","test_semvar_utils","TestSemvarUtils","","","test__prerelease_release_version__returns_true","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__consortia__OK","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[protocol-google]","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","12","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_no_auth_visibility_public__OK","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","10","tests.unit.backend.layers.business","test_business","TestSetCollectionVersionDatasetsOrder","","","test_set_collection_version_datasets_order_ok"," + The order of the datasets in a collection version is set using `set_collection_version_datasets_order`. + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters59]","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","0","tests.unit.backend.layers.utils","test_json","TestCustomJSONEncoder","","","test_unsupported_type","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","0","tests.unit.backend.layers.utils","test_json","TestCustomJSONEncoder","","","test_enum","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","13","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_does_not_change_original_published_at_ok"," + When publishing a collection version, the published_at for the canonical collection + should not change + " +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","10","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_collection_with_dataset_failing_validation","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_ignores_metadata_if_no_doi","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","0","tests.unit.processing","test_logger","","","","test_log_suppressed__caught","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters86]","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","2","tests.unit.scripts","test_zenhub_close","TestCloseReadyForProd","","","test_close_ready_for_prod_with_issues_to_close","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","1","tests.unit.processing","test_process_download","","","","test_estimate_resource_requirements_positive[adata1-memory_settings1-expected1]","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","0","tests.unit.scripts","test_zenhub_close","TestFilterIssues","","","test_filter_issues_with_blocking_issues","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","8","tests.unit.backend.layers.api","test_curation_api","TestS3Credentials","","","test__generate_s3_credentials__Not_Private","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollectionPutUploadLink","","","test__dataset_not_in_collection__404"," + Trying to publish a dataset belonging to a different collection raises a 404 + " +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","12","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_singletonness","" +"passed","Mon Oct 07 20:18:35 GMT 2024","Mon Oct 07 20:18:35 GMT 2024","25","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__create_h5ad_data_file__copies_index_of_obs_and_var_to_column","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_dataset_artifact_download_data_ok"," + Calling `get_dataset_artifact_download_data` should yield downloadable data + " +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_private_collection_dataset_super_202","" +"passed","Mon Oct 07 20:17:32 GMT 2024","Mon Oct 07 20:17:32 GMT 2024","20","tests.unit.backend.wmg.api.common","test_rollup","","","","test__rollup[no_compare_dim_gene_expressed_in_one_tissue_but_not_other-input_cell_counts_df2-expected_cell_counts_df2-input_gene_expr_df2-expected_gene_expr_df2]"," + Test that the `rollup` function correctly accumulates (or rolls up) gene-expression + values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths + grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ). + + The input: + + 1. A cell type ontology subgraph consisting of 4 cell types. + + CL:0000127 + ├── CL:0000644 + ├── CL:0002605 + └── CL:0002627 + + 2. A gene expression dataframe consisting of expression numeric values for each + (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. + 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id. + This value is held in a column called `n_cells_tissue`. + 6. A cell counts dataframe that consists of cell counts for each + (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. + 7. We set the `n_cells_tissue` column values to 1000 for all rows + in the gene expression dataframe. + 8. We set all other numeric column values to `1` in the gene expression dataframe. + + The expected output: + + 1. A rolled up gene expression dataframe. + 2. A rolled up cell counts dataframe. + 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe + does not change for all rows because it should not be rolled up the cell type ontology + ancestor paths. + 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`) + in the rolled up gene expression dataframe hold the correct rolled up values. + 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct + rolled up values. + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters34]","" +"passed","Mon Oct 07 20:18:35 GMT 2024","Mon Oct 07 20:18:36 GMT 2024","24","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__create_h5ad_data_file__obs_and_var_index_names_specified_doesnt_exist_raises_exception","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","41","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionVersions","","","test__get_collection_versions__200","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters93]","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__OK","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","26","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_tombstoned_dataset_in_a_collection_410","" +"passed","Mon Oct 07 20:17:29 GMT 2024","Mon Oct 07 20:17:30 GMT 2024","403","tests.unit.backend.wmg.api.common","test_expression_dotplot","ExpressionDotPlotTest","","","test__query_all_indexed_dims_multi_valued__returns_correct_result","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","2","tests.unit.processing","test_handle_error","","","","test_get_failure_slack_notification_message_with_dataset_version_id_none","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","1","tests.unit.processing","test_handle_error","","","","test_get_failure_slack_notification_message_with_dataset_and_collection","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters42]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters48]","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","5","tests.unit.backend.layers.api","test_curation_api","TestPostCollection","","","test__create_collection__InvalidParameters","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","35","tests.unit.backend.layers.api","test_portal_api","TestDeleteRevision","","","test__revision_deleted__204"," + Delete a collection under revision. + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_status__ok","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","5","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_replace_dataset_on_non_existing_dataset_fail"," + Calling `ingest_dataset` and specifying a non existant dataset_version_id should fail + " +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","1","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_public_collection_verify_consortia_sorted__OK_1","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","7","tests.unit.processing","test_rollback","","","","test_rollback_private_collection","" +"passed","Mon Oct 07 20:17:23 GMT 2024","Mon Oct 07 20:17:23 GMT 2024","129","tests.unit.backend.layers.api","test_curation_api","TestPostRevision","","","test__post_revision__OK","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_delete_collection__not_owner","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","20","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_with_added_dataset_ok"," + Publishing a version with a dataset added should succeed + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","32","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_prior_published_versions_for_dataset"," + Given a canonical dataset id, return all its DatasetVersions that have been part of published CollectionVersions + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","7","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__create_collection_strip_string_fields","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","206","tests.unit.backend.layers.utils","test_aws","TestDeleteManyFromS3","","","test_delete_from_s3_handles_no_files","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","29","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_cleanup_occurs_after_revision_is_canceled"," + New Dataset assets and rows not deleted until after revision is canceled (for previously-published Collection) + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","2","tests.unit.backend.layers.api","test_curation_api","TestPutLink","","","test__existing_from_link__OK"," + Calling PUT /datasets/:dataset_id on an existing dataset_id should succeed if a valid link is uploaded by the + owner of the collection or a super curator + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_status__403","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","2","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__get_key__401","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","20","tests.unit.processing","test_dataset_metadata_update","TestDatasetMetadataUpdaterWorker","","","test_update_cxg","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","4","tests.unit.backend.layers.business","test_business","TestSetCollectionVersionDatasetsOrder","","","test_set_collection_version_datasets_order_length_fail"," + Attempting to set the order of the datasets in a collection version with a list of different length should fail. + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","0","tests.unit.backend.layers.business","test_business","TestCreateCollection","","","test_create_collection_with_doi_error_ignores_metadata_ok"," + A collection with an invalid DOI will be created with empty publisher metadata + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[data_source-google.com]","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","8","tests.unit.backend.layers.api","test_portal_api","TestCollectionPutUploadLink","","","test__reupload_unpublished_dataset__202"," + Reuploads an unpublished dataset + " +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","11","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__rds_skipped","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_dataset_asset__OK","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[other-google.com]","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_dataset_status_for_uploaded_dataset_ok"," + Calling `get_dataset_status` should yield the processing status + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollectionPostUploadLink","","","test__link_fake_collection__403","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","2","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses__invalid_cxg_status_1","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","0","tests.unit.processing","test_matrix_utils","TestEnforceCanonical","","","test_adata_with_canonical_X","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","10","tests.unit.processing","test_cxg_generation_utils","TestCxgGenerationUtils","","","test__convert_dictionary_to_cxg_group__writes_successfully","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","0","tests.unit.processing.schema_migration","test_publish_revisions","TestPublishRevisions","","","test_check_datasets_no_errors","positive test case for check_datasets method." +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_remove_dataset_from_published_collection_fail"," + Removing a dataset from a published collection should fail + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_resurrect_collection_ok"," + A tombstoned Collection can be resurrected + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","16","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_dataset_published_at_with_new_dataset_ok"," + When publishing a collection that contains a new dataset, `published_at` for the new dataset should be updated + " +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","6","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_private_collection_dataset_invalid_status_405","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","15","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata","" +"passed","Mon Oct 07 20:17:23 GMT 2024","Mon Oct 07 20:17:23 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_with_collection_201","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","10","tests.unit.scripts","test_tombstone","TestTombstone","","","test__resurrect_collection","" +"passed","Mon Oct 07 20:17:29 GMT 2024","Mon Oct 07 20:17:29 GMT 2024","390","tests.unit.backend.wmg.api.common","test_expression_dotplot","ExpressionDotPlotTest","","","test__query_agg_cell_type_counts__returns_correct_result","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__verify_expected_private_collection_fields","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__remove_all_collection_consortia","" +"passed","Mon Oct 07 20:17:44 GMT 2024","Mon Oct 07 20:17:44 GMT 2024","73","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__primary_filter_dimensions__returns_200","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","1","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_from_file","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_all_datasets_ok"," + All dataset that belong to a published collection can be retrieved with `get_all_mapped_datasets` + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","4","tests.unit.processing","test_processing","ProcessingTest","","","test_reprocess_cxg_success","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters58]","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","2","tests.unit.processing","test_handle_error","","","","test_get_failure_slack_notification_message_with_missing_collection","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters0]","" +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","2","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_throws_exception_if_request_cannot_be_parsed"," + Asserts an CrossrefParseException if the GET request succeeds but cannot be parsed + " +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","52","tests.unit.backend.layers.api","test_curation_api","TestGetDatasetVersion","","","test_get_dataset_version_4xx","" +"passed","Mon Oct 07 20:17:47 GMT 2024","Mon Oct 07 20:17:47 GMT 2024","0","tests.unit.backend.wmg.data","test_snapshot","","","","test_get_wmg_snapshot_rel_path","" +"passed","Mon Oct 07 20:17:32 GMT 2024","Mon Oct 07 20:17:32 GMT 2024","0","tests.unit.backend.wmg.api.common","test_wmg_api_helpers","","","","test_sanitize_api_query_dict[input_query4-expected_sanitized_query4]","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","4","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_get_collection_version_from_canonical_unpublished_ok"," + `get_collection_version_from_canonical` retrieves the unpublished version connected + to the canonical collection, if no published version is available + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","7","tests.unit.backend.layers.api","test_portal_api","TestDatasetCurators","","","test__cancel_dataset_download__202_user_not_collection_owner_as_super_curator","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters76]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters29]","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","12","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_with_auth__OK_4","revision_of contains the id to their published counterpart" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","9","tests.unit.processing","test_rollback","","","","test_rollback_private_collections","" +"passed","Mon Oct 07 20:18:35 GMT 2024","Mon Oct 07 20:18:35 GMT 2024","1","tests.unit.processing","test_extract_metadata","TestProcessingValidate","","","test_get_spatial_metadata__is_single_and_fullres_true","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","11","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__update_private_collection_dataset_collection_published__403","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters54]","" +"passed","Mon Oct 07 20:18:57 GMT 2024","Mon Oct 07 20:19:01 GMT 2024","3514","tests.unit.wmg_processing","test_expression_summary_and_cell_counts_diffexp","ExpressionSummaryDiffexpTests","","","test_expression_summary_diffexp","" +"passed","Mon Oct 07 20:17:47 GMT 2024","Mon Oct 07 20:17:47 GMT 2024","15","tests.unit.backend.wmg.data","test_snapshot","","","","test_get_wmg_snapshot_fullpath[None]","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","1","tests.unit.processing.schema_migration","test_gather_collections","TestGatherCollections","","","test_with_private","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters73]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__cancel_dataset_download__user_not_logged_in","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","2","tests.unit.processing","test_matrix_utils","TestMatrixUtils","","","test__is_matrix_sparse__giant_matrix_returns_false_early","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","40","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_from_aws","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_artifacts_with_rdev_prefix","" +"passed","Mon Oct 07 20:17:47 GMT 2024","Mon Oct 07 20:17:47 GMT 2024","0","tests.unit.backend.wmg.data","test_snapshot","","","","test_get_wmg_snapshot_schema_dir_rel_path","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_artifact_metadata_invalid_title_error"," + Attempting to update a dataset with an invalid title raises an exception. + " +"passed","Mon Oct 07 20:17:59 GMT 2024","Mon Oct 07 20:18:05 GMT 2024","5875","tests.unit.backend.wmg","test_query","QueryTest","","","test__query_marker_genes_cube__returns_correct_all_markers","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_collection_with_no_datasets_fail"," + Publishing a collection version with no datasets should fail + " +"passed","Mon Oct 07 20:17:44 GMT 2024","Mon Oct 07 20:17:44 GMT 2024","2","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_missing_gene__request_returns_400","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters95]","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","8","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionVersions","","","test__get_collection_versions_tombstoned__410","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters47]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[other-https://]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","176","tests.unit.backend.layers.utils","test_aws","TestDeleteManyFromS3","","","test_delete_from_s3_deletes_all_files","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters66]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","8","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__list_collection__ok","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","9","tests.unit.processing","test_dataset_metadata_update","TestDatasetMetadataUpdaterWorker","","","test_update_raw_h5ad","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_collection_id__403_not_found"," + GET /collections/:collection_id returns 403 if an invalid is specified + " +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","1","tests.unit.backend.layers.utils","test_uri","TestS3URI","","","test__validate_with_invalid_s3_uri__returns_none","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_new_collection_no_doi_crossref_not_checked_ok"," + When publishing a new collection without a DOI, no Crossref check should be made. + " +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","5","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__error_if_missing_raw_h5ad","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test_update_collection_with_empty_required_fields","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters62]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters24]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","9","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_delete_collection_version__public__403","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_rollback","","","","test_rollback[rollback_args4]","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestGetCollectionVersion","","","test_get_collection_version_for_published_collection_ok"," + A published collection version can be obtained using `get_collection_version` + " +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","44","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_custom_secret_name","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","0","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_create_collection_version_fails_if_collection_not_exists"," + A collection version can only be created on an existing collection + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_rejects_doi_not_in_crossref","" +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","1","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_throws_exception_if_request_fails"," + Asserts a CrossrefFetchException if the GET request fails for any reason + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","13","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_sets_is_auto_version_False"," + When publishing a collection version, is_auto_version should be set to False + " +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","79","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_datasets_by_schema_200","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters51]","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","0","tests.unit.backend.layers.business","test_business","TestCreateCollection","","","test_create_collection_with_bad_links_fail"," + A collection where a link isn't a http URI cannot be created + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_collection_url","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","10","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__dataset_meta__ok","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","2","tests.unit.processing","test_spatial_assets_utils","","","","test__generate_deep_zoom_assets"," + Test the method to generate deep zoom assets + " +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","0","tests.unit.processing","test_process_download","","","","test_estimate_resource_requirements_positive[adata3-memory_settings3-expected3]","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","2","tests.unit.processing.schema_migration","test_collection_migrate","TestCollectionMigrate","","","test_no_datasets","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__collection_level_processing_status__PENDING","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","7","tests.unit.processing","test_rollback","","","","test_rollback_public_collection","" +"passed","Mon Oct 07 20:18:36 GMT 2024","Mon Oct 07 20:18:36 GMT 2024","119","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__to_cxg__simple_anndata_with_corpora_and_dense","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters90]","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","0","tests.unit.scripts","test_zenhub_close","TestFilterIssues","","","test_positive","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestCreateCollection","","","test_create_collection_with_links_ok"," + A collection with links can be created using `create_collection` + " +"passed","Mon Oct 07 20:17:32 GMT 2024","Mon Oct 07 20:17:32 GMT 2024","19","tests.unit.backend.wmg.api.common","test_rollup","","","","test__rollup[no_compare_dim_one_of_the_tissues_has_no_gene_expressions_at_all-input_cell_counts_df3-expected_cell_counts_df3-input_gene_expr_df3-expected_gene_expr_df3]"," + Test that the `rollup` function correctly accumulates (or rolls up) gene-expression + values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths + grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ). + + The input: + + 1. A cell type ontology subgraph consisting of 4 cell types. + + CL:0000127 + ├── CL:0000644 + ├── CL:0002605 + └── CL:0002627 + + 2. A gene expression dataframe consisting of expression numeric values for each + (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. + 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id. + This value is held in a column called `n_cells_tissue`. + 6. A cell counts dataframe that consists of cell counts for each + (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. + 7. We set the `n_cells_tissue` column values to 1000 for all rows + in the gene expression dataframe. + 8. We set all other numeric column values to `1` in the gene expression dataframe. + + The expected output: + + 1. A rolled up gene expression dataframe. + 2. A rolled up cell counts dataframe. + 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe + does not change for all rows because it should not be rolled up the cell type ontology + ancestor paths. + 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`) + in the rolled up gene expression dataframe hold the correct rolled up values. + 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct + rolled up values. + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","15","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_revision_same_doi_publisher_metadata_not_updated_ok"," + When publishing a revision - and there is no change in DOI - publisher metadata should not be + updated if the deposited date is before the revised at or originally published at date of the + corresponding collection. + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestCreateCollection","","","test_create_collection_with_not_found_doi_fail"," + A collection with a DOI that cannot be found on Crossref will not be created + " +"passed","Mon Oct 07 20:21:59 GMT 2024","Mon Oct 07 20:22:01 GMT 2024","2003","tests.unit.backend.cellguide.pipeline","test_gpt_descriptions","TestGptDescriptionGenerator","","","test__gpt_seo_description_generator","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","15","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_all_datasets_for_user_index","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","2","tests.unit.processing.schema_migration","test_gather_collections","TestGatherCollections","","","test_with_migration_revision","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","7","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__update_private_collection_dataset_invalid_processing_status__405","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","8","tests.unit.backend.layers.utils","test_uri","TestRegisteredSources","","","test_from_uri","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters74]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_order_unauthenticated__401","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_private_collection_crossref_checked_ok"," + When publishing a new collection with a DOI, a Crossref check should be made. + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_artifacts_CollectionDeleteException_with_H5AD","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_invalid_data_submission_policy_version__400"," + Checks for failure on submit of a data submission policy version that is not a valid version. + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","11","tests.unit.backend.layers.business","test_business","TestGetAllCollections","","","test_get_all_collections_with_owner_ok"," + Only collection versions with the specified owner should be returned, including both published and unpublished + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","7","tests.unit.backend.layers.api","test_portal_api","TestCollectionPostUploadLink","","","test__bad_link__400","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","3","tests.unit.processing.schema_migration","test_collection_migrate","TestCollectionMigrate","","","test_create_migration_revision__published_with_revision","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_blank_fields","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","11","tests.unit.processing","test_cxg_generation_utils","TestCxgGenerationUtils","","","test__convert_matrices_to_cxg_arrays__dense_array_writes_successfully","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","0","tests.unit.backend.layers.utils","test_json","TestCustomJSONEncoder","","","test_datetime","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_as_non_autorized__401"," + Publish a collection as a non authenticated user returns 403 + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[data_source-://]","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_private_collection_same_doi_publisher_metadata_not_updated_ok"," + When publishing a private collection - and there is no change in DOI - publisher metadata should not + be updated if the deposited date is before the created at date of the corresponding collection. + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__update_private_collection_dataset_invalid_collection__403","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters94]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters16]","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","10","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_get_collection_version_from_canonical_published_ok"," + `get_collection_version_from_canonical` retrieves the active published version connected + to the canonical collection, when available + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters22]","" +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","3","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_parses_authors_and_dates_correctly","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollectionsCurators","","","test_view_non_owned_private_collection__ok","" +"passed","Mon Oct 07 20:17:44 GMT 2024","Mon Oct 07 20:17:44 GMT 2024","4","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_containing_tissue__request_returns_400","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","2","tests.unit.backend.layers.business","test_business","TestDatasetArtifactMetadataUpdates","","","test_generate_dataset_citation","" +"passed","Mon Oct 07 20:17:28 GMT 2024","Mon Oct 07 20:17:30 GMT 2024","2070","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_delete_of_existing_secret_deletes_secret","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_collection_id_retrieves_unpublished_version"," + If a collection is unpublished, GET /collections/:collection_id retrieves the unpublished version + when passed the canonical collection_id + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection_same_doi_does_not_update_metadata","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[raw_data-google.com]","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","5","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_datasets_nonexistent_collection_4xx","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__add_new_collection_consortia","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_tombstone_collection_ok"," + A Collection can be tombstoned + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters36]","" +"passed","Mon Oct 07 20:17:23 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestPostRevision","","","test__post_revision__no_auth","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters72]","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","13","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_create_collection_version_multiple_auto_versions_false_fails"," + Given a canonical collection with a published version and an unpublished version with is_auto_version == False, + creating an unpublished collection version where is_auto_verison is False will fail. + " +"passed","Mon Oct 07 20:17:54 GMT 2024","Mon Oct 07 20:17:57 GMT 2024","2939","tests.unit.wmg_processing","test_dataset_metadata","DatasetMetadataTests","","","test_dataset_metadata","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_dataset_asset__file_SERVER_ERROR"," + `get_dataset_asset` should throw 500 if url or file_size aren't returned from the server + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","18","tests.unit.backend.layers.business","test_business","TestGetCollectionVersion","","","test_get_collection_version_for_tombstoned_collection"," + A tombstoned Collection's versions can only be obtained if the `get_tombstoned` flag is explicitly set to True + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","15","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_revision_changed_doi_collection_updated_ok"," + When publishing a revision - and there is a change in DOI - collection and artifacts should be updated. + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters91]","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","10","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__doi_does_not_exist__BAD_REQUEST","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_add_empty_dataset_ok"," + An empty dataset can be added to a collection when `create_empty_dataset` is called. + The resulting dataset should be empty and in a state ready for processing. + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters60]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters69]","" +"passed","Mon Oct 07 20:17:32 GMT 2024","Mon Oct 07 20:17:32 GMT 2024","273","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__filter_request_with_filter_dims__returns_valid_filter_dims","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestCollectionPutUploadLink","","","test__reupload_while_processing_dataset__405","cannot reupload a dataset that is pending" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","64","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_all_datasets_200","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","6","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_private_collection_dataset_not_authorized_403","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_rollback","","","","test_rollback[rollback_args3]","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","6","tests.unit.backend.layers.utils","test_uri","TestS3URI","","","test__validate_with_valid_s3_uri__ok","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__update_private_collection_dataset_no_authentication__401","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_ok"," + A collection version can be published using `publish_collection` + " +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","1","tests.unit.processing.schema_migration","test_publish_revisions","TestPublishRevisions","","","test_run_neg","Run method when check_datasets returns errors." +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection_partial__OK","" +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","18","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__get_title_and_citation_from_doi","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","8","tests.unit.scripts","test_tombstone","TestTombstone","","","test__tombstone_collection","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","4","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_dataset_versions","" +"passed","Mon Oct 07 20:18:37 GMT 2024","Mon Oct 07 20:18:37 GMT 2024","0","tests.unit.processing","test_handle_error","","","","test_parse_event_with_error_cause","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","26","tests.unit.backend.layers.api","test_curation_api","TestS3Credentials","","","test__generate_s3_credentials__OK","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","25","tests.unit.backend.layers.api","test_curation_api","TestGetDatasetVersion","","","test_get_dataset_version_ok","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters87]","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","2","tests.unit.backend.layers.api","test_curation_api","TestPostCollection","","","test__create_collection__no_auth","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","23","tests.unit.backend.layers.api","test_portal_api","TestDeleteRevision","","","test__delete_revision_unauth__403"," + An unauthorized user should not be able to delete a collection revision + " +"passed","Mon Oct 07 20:17:53 GMT 2024","Mon Oct 07 20:17:59 GMT 2024","5803","tests.unit.backend.wmg","test_query","QueryTest","","","test__query_expression_summary_default_cube__returns_correct_results","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","2","tests.unit.processing","test_dataset_submissions","TestDatasetSubmissions","","","test__non_owner__raises_error","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_invalid_email[email@place.]","" +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","1","tests.unit.backend.common","test_feature_flag","TestFeatureFlag","","","test_feature_flag","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__update_private_collection_dataset_not_authorized_403","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection_strip_string_fields__OK","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestCreateCollection","","","test_create_collection_ok"," + A collection can be created using `create_collection` + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_spatial_assets_utils","","","","test__invalid_input_metadata_copy"," + Test case to verify that a KeyError is raised when passing invalid input metadata + " +"passed","Mon Oct 07 20:17:29 GMT 2024","Mon Oct 07 20:17:29 GMT 2024","360","tests.unit.backend.wmg.api.common","test_expression_dotplot","ExpressionDotPlotTest","","","test__query_agg_tissue_counts__returns_correct_result","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","9","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_cleanup_occurs_after_deletion_for_private_collection"," + Updated Dataset assets and rows in private Collection should not be deleted until after Collection is deleted + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[lab_website-google]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters40]","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_dataset_assets","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","41","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_when_item_is_not_in_config_but_is_in_env_and_use_env_is_not_set_we_raise","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","40","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_collection__ok","" +"passed","Mon Oct 07 20:17:38 GMT 2024","Mon Oct 07 20:17:44 GMT 2024","5848","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__markers_returns_200_and_empty_dictionary_for_bad_celltypes","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","0","tests.unit.backend.layers.utils","test_json","TestCustomJSONEncoder","","","test_timedelta","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","34","tests.unit.backend.layers.api","test_curation_api","TestDeleteDataset","","","test__delete_published_dataset__405"," + A Dataset that has been published cannot be deleted via the API + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_spatial_assets_utils","","","","test__valid_input_metadata_copy"," + Test case for verifying the required metadata is present + " +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","19","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_dataset_in_a_tombstoned_collection_410","" +"passed","Mon Oct 07 20:17:30 GMT 2024","Mon Oct 07 20:17:30 GMT 2024","11","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_delete_of_unknown_secret_raises_exception","" +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","260","tests.unit.backend.layers.utils","test_uri","TestS3URI","","","test_download","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","20","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_new_dataset_in_revision__ok","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters45]","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","21","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__links__OK","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters82]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_spatial_assets_utils","","","","test__fetch_image_fullres"," + Test that _fetch_image returns the fullres image when present. + " +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","0","tests.unit.backend.common","test_doi","TestDoi","","","test__clean_doi","" +"passed","Mon Oct 07 20:17:30 GMT 2024","Mon Oct 07 20:17:30 GMT 2024","30","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_init_of_existing_secret_retrieves_secret_metadata","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","3","tests.unit.processing","test_process_download","TestProcessDownload","","","test_download_from_dropbox_uri"," + Call process download using a dropbox uri + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","14","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_delete_published_collection__ok","Published collections are tombstoned." +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","9","tests.unit.backend.layers.business","test_business","TestCollectionUtilities","","","test__restore_previous_collection_version__no_previous_versions"," + Test restoring a previous version of a collection fails when there are no previous versions + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters61]","" +"passed","Mon Oct 07 20:19:20 GMT 2024","Mon Oct 07 20:20:10 GMT 2024","49769","tests.unit.wmg_processing","test_marker_genes","MarkerGenesTests","","","test_marker_genes_cube","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","11","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_with_auth__OK_1","The 'revising_in' attribute is None for unauthorized public collections" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","1","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[protocol-http://somewhere.org/path/?abcd=123]","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestUpdateCollection","","","test_update_published_collection_fail"," + Updating a collection version that is published should fail + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[data_source-.com]","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","47","tests.unit.processing","test_cxg_generation_utils","TestCxgGenerationUtils","","","test__convert_matrices_to_cxg_arrays__sparse_array_only_store_nonzeros","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","9","tests.unit.backend.layers.business","test_business","TestDatasetArtifactMetadataUpdates","","","test_trigger_dataset_artifact_update","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","3","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses__invalid_h5ad_status_1","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__create_collection__InvalidParameters_DOI","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","8","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_delete_private_collection_version__ok","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters83]","" +"passed","Mon Oct 07 20:18:36 GMT 2024","Mon Oct 07 20:18:36 GMT 2024","247","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__to_cxg__simple_anndata_no_corpora_and_dense","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","19","tests.unit.backend.layers.business","test_business","TestGetCollectionVersion","","","test_get_unpublished_collection_versions_from_canonical"," + Unpublished Collection versions can be retrieved from a canonical Collection + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_add_dataset_artifact_ok"," + A dataset artifact can be added using `add_dataset_artifact` + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","17","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_with_removed_datasets__OK"," + Publish a revision with delete datasets. + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestAuthToken","","","test__post_token__401","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollectionPostUploadLink","","","test__link_not_owner__403","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","12","tests.unit.processing","test_rollback","","","","test_rollback_published_collection_list","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","13","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__verify_expected_revision_collection_fields","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_adds_publisher_metadata","" +"passed","Mon Oct 07 20:17:32 GMT 2024","Mon Oct 07 20:17:32 GMT 2024","0","tests.unit.backend.wmg.api.common","test_wmg_api_helpers","","","","test_sanitize_api_query_dict[input_query1-expected_sanitized_query1]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","12","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_order_get_default_sort__OK","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","10","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_create_collection_version_is_auto_version_succeeds"," + Given a canonical collection with a published version and no unpublished versions, + creating an unpublished collection version where is_auto_verison is True will succeed. + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","21","tests.unit.backend.layers.api","test_portal_api","TestRevision","","","test__start_revision_of_a_collection_w_links__201"," + Start a revision of a collection with links. + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_artifacts_delete_no_artifacts","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","111","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_incorrect_gene_ids"," + Successfully raises exception for ensembl IDs that do not exist + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestPostRevision","","","test__post_revision_by_collection_version_id_403","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","3","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses__invalid_rds_status_0","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","10","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_with_auth__OK_5","revision_of contains None if the collection is public" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__no_auth","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_rejects_two_dois","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_replace_dataset_in_published_collection_fail"," + Replacing a dataset that belongs to a published collection should fail + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","4","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__delete_key__404","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","16","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection_links__OK","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters21]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","1","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[other-http://somewhere.org/path/?abcd=123]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters13]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","15","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_deleted_collection_does_not_appear_in_collection_lists","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","4","tests.unit.processing","test_process_download","TestProcessDownload","","","test_download_from_s3_uri"," + Call process download using an s3 uri + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters19]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters10]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_all_user_collections_for_index_requires_auth","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection__403","" +"passed","Mon Oct 07 20:17:31 GMT 2024","Mon Oct 07 20:17:31 GMT 2024","434","tests.unit.backend.wmg.api.common","test_expression_dotplot","ExpressionDotPlotTest","","","test__query_non_indexed_dim_single_valued__returns_correct_result","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","0","tests.unit.processing","test_logger","","","","test_log_suppressed__missed","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","11","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_all_datasets_for_index_with_ontology_expansion","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","2","tests.unit.processing","test_handle_error","","","","test_get_failure_slack_notification_message_with_dataset_not_found","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","23","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionVersionID","","","test_get_collection_version_ok","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[other-google]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","1","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_unexpected_ncbi_responses","Correctly identifies a valid search result from NCBI" +"passed","Mon Oct 07 20:18:36 GMT 2024","Mon Oct 07 20:18:37 GMT 2024","132","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__to_cxg__with_sparse_column_encoding","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters57]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","12","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__cancel_dataset_download__ok","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_spatial_assets_utils","","","","test__fetch_image_key_error"," + Test that _fetch_image raises KeyError when neither fullres nor hires images are present. + " +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__Super_Curator","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestGetCollectionVersion","","","test_get_published_collection_version_for_published_collection_is_none"," + An unpublished collection should not be obtained using get_collection + Instead, `get_collection_version` should be used + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","4","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_artifact_metadata_missing_title_error"," + Attempting to update a dataset without providing a title raises an exception. + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_replace_dataset_in_unpublished_collection_ok"," + A dataset can be replaced from a collection version by calling `ingest_dataset` + and specifying an existing dataset_version_id + " +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","11","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__raw_h5ad_updated","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","14","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_with_updated_metadata_ok"," + Publishing a collection with updated metadata should succeed, but not update revised_at + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","19","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_dataset_version_from_canonical"," + Get currently published dataset version using canonical dataset ID, or most recent active unpublished dataset + if none are published. + " +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","1","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_throws_exception_if_request_fails_with_404"," + Asserts a CrossrefFetchException if the GET request fails for any reason + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","2","tests.unit.backend.layers.business","test_business","TestDatasetArtifactMetadataUpdates","","","test_generate_dataset_citation__no_doi","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters4]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:28 GMT 2024","122","tests.unit.backend.layers.utils","test_aws","TestDeleteManyFromS3","","","test_delete_from_s3_raises_error_for_missing_dataset_id","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","0","tests.unit.scripts","test_zenhub_close","","","","test_format_issue","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","0","tests.unit.processing","test_matrix_utils","TestMatrixUtils","","","test__is_matrix_sparse__zero_and_one_hundred_percent_threshold","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","12","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_create_collection_version_multiple_auto_versions_true_fails"," + Given a canonical collection with a published version and an unpublished version where is_auto_version is True, + creating another unpublished collection version where is_auto_version is True will fail. + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","7","tests.unit.processing","test_processing","ProcessingTest","","","test_process_seurat_success","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters56]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters49]","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","3","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__delete_key__202","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_artifacts_delete_h5ad","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","0","tests.unit.processing","test_process_download","","","","test_get_job_definion_name[environ2-dp-test-ingest-process-fake_dataset_id]","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","7","tests.unit.processing","test_process_download","TestProcessDownload","","","test_process_download_success"," + ProcessValidate should: + 1. Download the h5ad artifact + 2. Set upload status to UPLOADED + 3. upload the original file to S3 + " +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:23 GMT 2024","1031","tests.unit.backend.layers.api","test_curation_api","TestGetDatasetIdVersions","","","test_get_dataset_id_versions_ok","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","1","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_gene_checker"," + GeneChecker successfully creates a dictionary of gene names to gene IDs, + checks validity of gene names, and returns ensembl ID for a gene name. + " +"passed","Mon Oct 07 20:17:23 GMT 2024","Mon Oct 07 20:17:23 GMT 2024","8","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_public_collection_405","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","17","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_resurrect_collection_with_tombstoned_dataset_ok"," + Individually-tombstoned Datasets should remain tombstoned after resurrection of their parent Collection. + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","0","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_parse_xml_tree_missing_values"," + Returns correct dictionary with missing values if given XML tree with missing values + " +"passed","Mon Oct 07 20:22:14 GMT 2024","Mon Oct 07 20:25:45 GMT 2024","211097","tests.unit.backend.cellguide.pipeline","test_ontology_tree","OntologyTreeBuilderTests","","","test__ontology_tree_builder","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","2","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_correct_parse_xml_tree"," + Successfully parses a properly formatted XML tree for gene information + " +"passed","Mon Oct 07 20:17:31 GMT 2024","Mon Oct 07 20:17:31 GMT 2024","41","tests.unit.backend.wmg.api.common","test_rollup","","","","test__rollup[no_compare_dim_all_tissues_have_all_cell_types-input_cell_counts_df0-expected_cell_counts_df0-input_gene_expr_df0-expected_gene_expr_df0]"," + Test that the `rollup` function correctly accumulates (or rolls up) gene-expression + values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths + grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ). + + The input: + + 1. A cell type ontology subgraph consisting of 4 cell types. + + CL:0000127 + ├── CL:0000644 + ├── CL:0002605 + └── CL:0002627 + + 2. A gene expression dataframe consisting of expression numeric values for each + (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. + 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id. + This value is held in a column called `n_cells_tissue`. + 6. A cell counts dataframe that consists of cell counts for each + (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. + 7. We set the `n_cells_tissue` column values to 1000 for all rows + in the gene expression dataframe. + 8. We set all other numeric column values to `1` in the gene expression dataframe. + + The expected output: + + 1. A rolled up gene expression dataframe. + 2. A rolled up cell counts dataframe. + 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe + does not change for all rows because it should not be rolled up the cell type ontology + ancestor paths. + 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`) + in the rolled up gene expression dataframe hold the correct rolled up values. + 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct + rolled up values. + " +"passed","Mon Oct 07 20:18:37 GMT 2024","Mon Oct 07 20:18:37 GMT 2024","0","tests.unit.processing","test_handle_error","","","","test_parse_event_with_invalid_error_cause","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[lab_website-://]","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollectionUploadLinkCurators","","","test__can_upload_dataset_to_non_owned_collection_as_super_curator"," + A super curator can upload a dataset to a non-owned collection + " +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","3","tests.unit.processing","test_matrix_utils","TestMatrixUtils","","","test__is_matrix_sparse_with_column_shift_encoding__giant_matrix_returns_false_early","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","3","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__get_key__404","" +"passed","Mon Oct 07 20:17:32 GMT 2024","Mon Oct 07 20:17:32 GMT 2024","19","tests.unit.backend.wmg.api.common","test_rollup","","","","test__rollup[no_compare_dim_all_tissues_have_all_cell_types_except_root_cell_type-input_cell_counts_df5-expected_cell_counts_df5-input_gene_expr_df5-expected_gene_expr_df5]"," + Test that the `rollup` function correctly accumulates (or rolls up) gene-expression + values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths + grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ). + + The input: + + 1. A cell type ontology subgraph consisting of 4 cell types. + + CL:0000127 + ├── CL:0000644 + ├── CL:0002605 + └── CL:0002627 + + 2. A gene expression dataframe consisting of expression numeric values for each + (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. + 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id. + This value is held in a column called `n_cells_tissue`. + 6. A cell counts dataframe that consists of cell counts for each + (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. + 7. We set the `n_cells_tissue` column values to 1000 for all rows + in the gene expression dataframe. + 8. We set all other numeric column values to `1` in the gene expression dataframe. + + The expected output: + + 1. A rolled up gene expression dataframe. + 2. A rolled up cell counts dataframe. + 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe + does not change for all rows because it should not be rolled up the cell type ontology + ancestor paths. + 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`) + in the rolled up gene expression dataframe hold the correct rolled up values. + 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct + rolled up values. + " +"passed","Mon Oct 07 20:18:35 GMT 2024","Mon Oct 07 20:18:35 GMT 2024","33","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__create_h5ad_data_file__copy_if_var_index_name_not_in_columns","" +"passed","Mon Oct 07 20:19:02 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","23023","tests.unit.processing","test_handle_error","","","","test_non_migration_event_triggers_slack","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters1]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters17]","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","4","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_artifact_metadata_invalid_status_error"," + Attempting to update a dataset with a non-success processing status raises an exception. + " +"passed","Mon Oct 07 20:25:45 GMT 2024","Mon Oct 07 20:26:05 GMT 2024","19902","tests.unit.backend.cellguide.pipeline","test_source_collections_generator","TestSourceCollectionsGenerator","","","test__source_collections_generator","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","21","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_get_collection_versions_for_canonical_ok"," + `get_collection_versions_from_canonical` can be used to retrieve all the versions + for a canonical collection, whether those are published, active or neither + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters32]","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","40","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_when_item_is_in_config_but_not_in_env_and_use_env_is_set_we_use_config","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","2","tests.unit.processing.schema_migration","test_dataset_migrate","TestDatasetMigrate","","","test_dataset_migrate_revision","" +"passed","Mon Oct 07 20:17:23 GMT 2024","Mon Oct 07 20:17:23 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_returns_canonical_id"," + POST /datasets returns the canonical dataset id on creation. + " +"passed","Mon Oct 07 20:17:20 GMT 2024","Mon Oct 07 20:17:20 GMT 2024","12","tests.unit.backend.layers.api","test_curation_api","TestDeleteCollection","","","test__delete_private_collection_by_collection_version_id","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","10","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__missing_labeled_h5ad","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","8","tests.unit.backend.layers.api","test_portal_api","TestCollectionUploadLinkCurators","","","test__can_reupload_dataset_as_super_curator"," + A super curator can reupload a dataset to a non-owned collection + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_spatial_assets_utils","","","","test__upload_assets_failure"," + Test upload assets to S3 when the upload fails + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","10","tests.unit.backend.layers.api","test_curation_api","TestPutLink","","","test_from_link__403"," + Calling PUT /datasets/:dataset_id should fail if version IDs are used for unpublished collections or + for referencing datasets + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestCollectionPutUploadLink","","","test__reupload_dataset_not_owner__403","" +"passed","Mon Oct 07 20:17:23 GMT 2024","Mon Oct 07 20:17:23 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestPostRevision","","","test__post_revision__Not_Owner","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_nonexistent_dataset_4xx","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","2","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_replace_dataset_on_empty_dataset_does_not_generate_new_ok"," + Calling `ingest_dataset` and specifying an existing dataset that is empty should start the ingestion + without creating a new dataset version + " +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","2","tests.unit.processing","test_process_download","TestProcessDownload","","","test_download_unknown_uri"," + Call process download using unknown + " +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","2","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses__invalid_h5ad_status_0","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters68]","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","10","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_collection_with_x_approximate_distribution_none__OK","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","5","tests.unit.processing","test_spatial_assets_utils","","","","test__process_and_flip_image"," + Test the image processing method + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","14","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_create_collection_version_is_auto_version_succeeds__with_revision"," + Given a canonical collection with a published version and an unpublished version where is_auto_version is False, + creating another unpublished collection version where is_auto_version is True will succeed. + " +"passed","Mon Oct 07 20:19:07 GMT 2024","Mon Oct 07 20:19:08 GMT 2024","1211","tests.unit.wmg_processing","test_expression_summary_default","ExpressionSummaryDefaultTests","","","test_expression_summary_default","" +"passed","Mon Oct 07 20:17:20 GMT 2024","Mon Oct 07 20:17:20 GMT 2024","29","tests.unit.backend.layers.api","test_curation_api","TestDeleteCollection","","","test__delete_public_collection","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestSetCollectionVersionDatasetsOrder","","","test_set_collection_version_datasets_order_no_custom_order_ok"," + The order of the datasets in a collection version is the default cell count, descending. + " +"passed","Mon Oct 07 20:17:32 GMT 2024","Mon Oct 07 20:17:38 GMT 2024","5818","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__markers_returns_200_and_correct_response","" +"passed","Mon Oct 07 20:17:23 GMT 2024","Mon Oct 07 20:17:23 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPostRevision","","","test__post_revision__Not_Public","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters71]","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","0","tests.unit.backend.layers.utils","test_semvar_utils","TestSemvarUtils","","","test__release_only_misformatted_version__returns_false","" +"passed","Mon Oct 07 20:20:20 GMT 2024","Mon Oct 07 20:20:20 GMT 2024","594","tests.unit.wmg_processing","test_primary_filter_dimensions","PrimaryFilterDimensionsTests","","","test_primary_filter_dimensions","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_dataset_artifacts_ok"," + Artifacts belonging to a dataset can be obtained with `get_dataset_artifacts` + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","10","tests.unit.processing","test_rollback","","","","test_rollback_private_dataset_list","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","6","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test_get_collection_with_dataset_no_metadata"," + GET collection should work when the collection has datasets with no metadata. + This happens when the dataset did not complete ingestion yet. + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","16","tests.unit.backend.layers.business","test_business","TestUpdateCollection","","","test_update_published_collection_fail__dataset_status_pending"," + Updating a collection version with a DOI change IF there is a dataset in non-finalized status should fail + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","31","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_delete_collection_revision__ok","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters39]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters96]","" +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","1","tests.unit.backend.common","test_common","","","","test_remove_duplicate_dataset_assets_no_duplicates","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","0","tests.unit.processing","test_process_download","","","","test_get_job_definion_name[environ1-dp-test-stack-ingest-process-fake_dataset_id]","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","1","tests.unit.scripts","test_zenhub_close","TestCloseReadyForProd","","","test_close_ready_for_prod_with_blocked_issues","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","12","tests.unit.processing","test_cxg_generation_utils","TestCxgGenerationUtils","","","test__convert_matrices_to_cxg_arrays__sparse_array_only_store_nonzeros_empty_array","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","3","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses__invalid_rds_status_1","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_spatial_assets_utils","","","","test__crop_to_aspect_ratio[55-30]"," + Test the cropping method to ensure the image is cropped to a square + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[raw_data-https://]","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","40","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_when_item_is_in_config_and_is_in_env_and_use_env_is_set_we_use_env","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_private_datasets_403","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","28","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_dataset_in_a_collection","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_dataset_in_private_collection__ok","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","11","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_tombstoned_collection__410","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_rollback","","","","test_rollback[rollback_args1]","" +"passed","Mon Oct 07 20:17:47 GMT 2024","Mon Oct 07 20:17:47 GMT 2024","527","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__schema4__query_request_with_compare_by_ethnicity__excludes_comma_delimited_ethnicity_values","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","1","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[protocol-://]","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_status_validation_message_ok"," + The dataset validation message can be updated using `update_dataset_status` + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestSetPreviousDatasetVersion","","","test_revision_with_no_previous_version","" +"passed","Mon Oct 07 20:20:30 GMT 2024","Mon Oct 07 20:20:36 GMT 2024","6737","tests.unit.backend.cellguide.pipeline","test_canonical_marker_genes","CanonicalMarkerGeneCompilerTests","","","test__canonical_marker_genes","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionVersions","","","test__get_collection_versions_not_a_uuid__403","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","1","tests.unit.processing.schema_migration","test_dataset_migrate","TestDatasetMigrate","","","test_dataset_migrate_private","" +"passed","Mon Oct 07 20:17:48 GMT 2024","Mon Oct 07 20:17:48 GMT 2024","0","tests.unit.wmg_processing","test_cube_pipeline","TestCubePipe","","","test_versioned_s3_paths"," + Tests that the path we use for writing the snapshot is the versioned path. + + NOTE: Ideally, we would want this to be a true test of the cube pipeline that actually runs the pipeline, + mocks the S3 upload, and then verifies that the API reads are pulling from the correct mocked S3 files. + This way, we're testing the high-level functionality of the cube pipeline and the API calls directly. + Since our testing infra doesn't currently support S3 mocks well, the past of least resistance is to test + the lower level functions that WMG uses to figure out where to write and read snapshots from. + " +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","3","tests.unit.processing","test_matrix_utils","TestEnforceCanonical","","","test_adata_with_noncanonical_raw_X","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_delete_collection__does_not_exist","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","13","tests.unit.backend.layers.business","test_business","TestCollectionUtilities","","","test__delete_datasets_from_public_access_bucket"," + Test Dataset deletes when tombstoning a public Collection with published and updated Datasets in an outstanding + Revision + " +"passed","Mon Oct 07 20:18:35 GMT 2024","Mon Oct 07 20:18:35 GMT 2024","1","tests.unit.processing","test_extract_metadata","TestProcessingValidate","","","test_get_spatial_metadata__is_single_false","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","1","tests.unit.processing","test_handle_error","TestCleanupArtifacts","","","test_cleanup_artifacts__OK[None]","Check that all artifacts are deleted for the given cases." +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","11","tests.unit.backend.layers.api","test_curation_api","TestPutLink","","","test__from_link__Not_Public"," + Calling PUT /datasets/:dataset_id should fail with 403 Unauthorized + if trying to upload to a published collection + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","4","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_set_dataset_metadata_ok"," + The dataset metadata can be set using `set_dataset_metadata` + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestCollectionPostUploadLink","","","test__link_no_auth__401","" +"passed","Mon Oct 07 20:20:10 GMT 2024","Mon Oct 07 20:20:10 GMT 2024","1","tests.unit.wmg_processing","test_ontology_labels","OntologyLabelTests","","","test__gene_label","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","12","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_update_crossref_metadata_same_doi_returns_none_ok"," + The check for changes in Crossref returns None if there is no change between the existing DOI and the + DOI returned from Crossref. + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_fails_on_published_collection"," + `publish_collection_version` should fail if called on a collection version that is already published. + " +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","12","tests.unit.processing","test_cxg_generation_utils","TestCxgGenerationUtils","","","test__convert_ndarray_to_cxg_dense_array__writes_successfully","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[protocol-google.com]","" +"passed","Mon Oct 07 20:17:20 GMT 2024","Mon Oct 07 20:17:20 GMT 2024","4","tests.unit.backend.layers.api","test_app","TestAPI","","","test__catchall_exception_handler","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","1","tests.unit.scripts","test_zenhub_close","TestFilterIssues","","","test_filter_issues_with_openprs","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","2","tests.unit.processing.schema_migration","test_gather_collections","TestGatherCollections","","","test_with_revision","" +"passed","Mon Oct 07 20:17:44 GMT 2024","Mon Oct 07 20:17:44 GMT 2024","2","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_empty_request__returns_400","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","9","tests.unit.backend.layers.business","test_business","TestDatasetArtifactMetadataUpdates","","","test_trigger_dataset_artifact_update__with_new_dataset_version_id","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","1","tests.unit.processing.schema_migration","test_error_wrapper","","","","test_error_wrapper","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters78]","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","3","tests.unit.processing","test_process_validate","ProcessingTest","","","test_process_validate_fail"," + If the validation is not successful, the processing pipeline should: + 1. Set the processing status to INVALID + 2. Set a validation message accordingly + " +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPostCollection","","","test__create_collection__strip_string_fields","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","13","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_dataset_version","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_bad_id__403"," + Publish a collection with a bad uuid (non existant) returns 403 + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters2]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[lab_website-https://www.google.com]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[raw_data-https://www.google.com]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_order_unauthorized__403","" +"passed","Mon Oct 07 20:18:35 GMT 2024","Mon Oct 07 20:18:35 GMT 2024","2","tests.unit.processing","test_dataset_submissions","TestDatasetSubmissions","","","test__upload_update_by_dataset_id_owner__OK"," + Processing starts when an update of a dataset is uploaded by its ID by the collection owner. + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","3","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__delete_key__401","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_artifact_ok"," + A dataset artifact can be updated using `update_dataset_artifact` + " +"passed","Mon Oct 07 20:18:03 GMT 2024","Mon Oct 07 20:18:50 GMT 2024","47177","tests.unit.wmg_processing","test_expression_summary_and_cell_counts","ExpressionSummaryAndCellCountsTests","","","test_expression_summary_and_cell_counts","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","15","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_published_dataset_in_revision__success","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_OK","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters44]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection__OK","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestGetCollectionVersion","","","test_get_published_collection_version_for_published_collection_ok"," + A published collection can be obtained using `get_collection` + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_sorts_consortia","" +"passed","Mon Oct 07 20:18:36 GMT 2024","Mon Oct 07 20:18:36 GMT 2024","130","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__to_cxg__simple_anndata_with_corpora_and_sparse","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","7","tests.unit.processing","test_process_validate","ProcessingTest","","","test_process_download_validate_success"," + ProcessDownloadValidate should: + 1. Download the h5ad artifact + 2. set validation status to VALID + 3. Set upload status to UPLOADED + 4. set h5ad status to UPLOADED + 5. upload the original file to S3 + 6. upload the labeled file to S3 + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","16","tests.unit.backend.layers.business","test_business","TestCollectionUtilities","","","test__restore_previous_collection_version"," + Test restoring a previous version of a collection + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_add_dataset_to_published_collection_fail"," + Adding a dataset to a published collection should result in a failure + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters84]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_spatial_assets_utils","","","","test__crop_to_aspect_ratio[100-55]"," + Test the cropping method to ensure the image is cropped to a square + " +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","15","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionVersions","","","test__get_collection_versions_not_published_canonical__404","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","72","tests.unit.backend.layers.api","test_curation_api","TestDeleteCollection","","","test__delete_tombstone_collection","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","3","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses_0","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__verify_expected_public_collection_fields","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters8]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters27]","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","0","tests.unit.processing","test_process_download","","","","test_estimate_resource_requirements_positive[adata0-memory_settings0-expected0]","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","41","tests.unit.backend.layers.business","test_business","TestGetDataset","","","test_get_prior_published_dataset_version"," + Given a dataset version id, return the DatasetVersion IF its been part of a published CollectionVersion + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","8","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_collection_triggers_cloudfront_invalidation","" +"passed","Mon Oct 07 20:18:36 GMT 2024","Mon Oct 07 20:18:36 GMT 2024","114","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__to_cxg__simple_anndata_with_corpora_and_dense_using_feature_name_var_index","" +"passed","Mon Oct 07 20:18:35 GMT 2024","Mon Oct 07 20:18:35 GMT 2024","23","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__create_h5ad_data_file__no_copy_if_var_index_name_already_in_columns","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","1","tests.unit.processing","test_dataset_submissions","TestDatasetSubmissions","","","test__missing_curator_file_name__raises_error","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","1","tests.unit.processing.schema_migration","test_publish_revisions","TestPublishRevisions","","","test_run_pos__do_not_publish_list","Run method when revision is skipped via do_not_publish_list." +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters55]","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","13","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_revision__OK","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","1","tests.unit.processing","test_process_download","","","","test_create_batch_job_definition_parameters","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_artifacts_with_no_match","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","35","tests.unit.backend.layers.business","test_business","TestGetAllCollections","","","test_get_all_collections_unpublished_ok"," + If published filter flag is False, only unpublished collections should be returned + " +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","6","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection_partial_data__OK","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","8","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_private_collection_dataset_owner_202","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[raw_data-google]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","1","tests.unit.backend.layers.thirdparty","test_s3_provider","TestS3Provider","","","test__object_deletion","" +"passed","Mon Oct 07 20:22:01 GMT 2024","Mon Oct 07 20:22:08 GMT 2024","6768","tests.unit.backend.cellguide.pipeline","test_metadata_generator","TestMetadataGenerator","","","test__cell_metadata_generator","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters97]","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","10","tests.unit.backend.layers.api","test_portal_api","TestCollectionPostUploadLink","","","test_link_public_collection__403","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","5","tests.unit.backend.layers.business","test_business","TestUpdateCollection","","","test_update_collection_ok"," + A collection version should be updated when using `update_collection` + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","13","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_data_submission_policy_version__OK"," + Checks data submission policy is correctly saved on publish of a revision. + " +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_public_collection_verify_consortia_sorted__OK_2","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","33","tests.unit.backend.layers.api","test_curation_api","TestDeleteDataset","","","test__delete_published_dataset_cxg_admin"," + cxg_admin role can delete published Datasets during revisions using query_param flag 'delete_published=true' + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","4","tests.unit.backend.layers.business","test_business","TestSetPreviousDatasetVersion","","","test_with_published_collection","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollectionPostUploadLink","","","test__link__202","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","25","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_collection_id_returns_revision_of_published_collection","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection_strip_string_fields","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_as_not_owner__403"," + Publish a collection as a non-owner returns 403 + " +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","2","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_unescapes_journal_correctly","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters18]","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","5","tests.unit.processing.schema_migration","test_log_errors_and_cleanup","TestLogErrorsAndCleanup","","","test_with_errors","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","25","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_a_curators_collections","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","3","tests.unit.processing","test_rollback","","","","test_rollback_private_dataset[False]","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","71","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_private_datasets_200"," + Tests /curation/v1/datasets endpoint with different credentials and visibility filters. + + Test data setup: + - published_collection_1: 2 datasets + - published_collection_2: 1 dataset, other owner + - published_collection_3: 1 dataset, previously revised and published + - unpublished_collection_1: 3 datasets + - unpublished_collection_2: 2 datasets, other owner + - published_collection_1_revision: 3 datasets (one new, one modified) + + " +"passed","Mon Oct 07 20:17:30 GMT 2024","Mon Oct 07 20:17:30 GMT 2024","11","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_init_of_unknown_secret_does_not_set_secret_metadata","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_invalid_email[email@.]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters50]","" +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","17","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_does_not_call_crossref_in_test","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters37]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_invalid_characters_in_field[\x7ftext]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestPutLink","","","test__from_link__Not_Owner"," + Calling PUT /datasets/:dataset_id should fail with 403 Unauthorized + if the authenticated user is not the owner of a collection + " +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","264","tests.unit.processing","test_color_conversion_utils","TestColorConversionUtils","","","test_term_vs_label_colors","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__list_collection_options__allow","" +"passed","Mon Oct 07 20:17:30 GMT 2024","Mon Oct 07 20:17:30 GMT 2024","424","tests.unit.backend.wmg.api.common","test_expression_dotplot","ExpressionDotPlotTest","","","test__query_all_indexed_dims_single_value__returns_correct_result","" +"passed","Mon Oct 07 20:17:32 GMT 2024","Mon Oct 07 20:17:32 GMT 2024","0","tests.unit.backend.wmg.api.common","test_wmg_api_helpers","","","","test_sanitize_api_query_dict[input_query3-expected_sanitized_query3]","" +"passed","Mon Oct 07 20:17:44 GMT 2024","Mon Oct 07 20:17:44 GMT 2024","169","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_explicit_cell_ordering__returns_correct_cell_ordering","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","11","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_all_datasets_for_index","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection_by_version_id__403","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","5","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_private_collection__OK","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters105]","" +"passed","Mon Oct 07 20:17:46 GMT 2024","Mon Oct 07 20:17:47 GMT 2024","394","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__schema4__filter_request_with_nonempty_criteria__excludes_comma_delimited_ethnicity_values","" +"passed","Mon Oct 07 20:17:30 GMT 2024","Mon Oct 07 20:17:32 GMT 2024","2058","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_update_of_existing_secret_updates_secret","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_private_collection_same_doi_publisher_metadata_updated_ok"," + When publishing a private collection - and there is no change in DOI - publisher metadata should be + updated if the deposited date is after the created at date of the corresponding collection. + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","3","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__get_key__200","" +"passed","Mon Oct 07 20:17:45 GMT 2024","Mon Oct 07 20:17:45 GMT 2024","425","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_request_multi_primary_dims_only__returns_200_and_correct_response","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","16","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_dataset_published_at_with_replaced_dataset_ok"," + When publishing a collection that contains a replaced dataset, + `published_at` for the replaced dataset should not be updated + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","2","tests.unit.processing","test_type_conversion_utils","TestTypeConversionUtils","","","test__get_dtypes_and_schemas_of_dataframe__dtype_and_schema_returns_as_expected","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","58","tests.unit.processing","test_dataset_metadata_update","TestDatasetMetadataUpdaterWorker","","","test_update_rds","" +"passed","Mon Oct 07 20:18:35 GMT 2024","Mon Oct 07 20:18:35 GMT 2024","3","tests.unit.processing","test_dataset_submissions","TestDatasetSubmissions","","","test__upload_update_by_dataset_canonical_id__OK"," + Processing starts when an update of a dataset is uploaded using canonical ids + + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","5","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_gene_checker_call"," + Successfully calls GeneChecker if called with only a name parameter + " +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__remove_collection__consortia__OK","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","5","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_remove_dataset_from_unpublished_collection_ok"," + A dataset can be removed from a collection version using `delete_dataset`. This should delete the dataset. + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_spatial_assets_utils","","","","test__upload_assets"," + Test upload assets to S3 + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","15","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__update_revision_dataset__ok","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","22","tests.unit.processing","test_cxg_generation_utils","TestCxgGenerationUtils","","","test__convert_dataframe_to_cxg_array__writes_successfully","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters9]","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","8","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__can_publish_owned_collection","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_private_collection_dataset_no_auth_401","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","1","tests.unit.processing.schema_migration","test_gather_collections","TestGatherCollections","","","test_with_mixed_collection_types","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters14]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","9","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__call_delete_dataset__twice","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","10","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_collection_with_dataset_failing_pipeline","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[doi-https://]","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestDatasetCurators","","","test__get_status__200_for_non_owned_dataset_as_super_curator","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","56","tests.unit.backend.layers.api","test_curation_api","TestGetDatasetIdVersions","","","test_get_dataset_id_version_4xx","" +"passed","Mon Oct 07 20:17:30 GMT 2024","Mon Oct 07 20:17:31 GMT 2024","384","tests.unit.backend.wmg.api.common","test_expression_dotplot","ExpressionDotPlotTest","","","test__query_non_indexed_dim_multi_valued__returns_correct_result","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","8","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_public_collection_owner__405","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","15","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_revision_no_doi_crossref_not_checked_ok"," + Crossref should not be called to check for updates to the publisher metadata when publishing + a revision that has no DOI. + " +"passed","Mon Oct 07 20:17:47 GMT 2024","Mon Oct 07 20:17:53 GMT 2024","5896","tests.unit.backend.wmg","test_query","CensusCubeQueryParamsTest","","","test__cube_query_params_for_expression_summary_cube","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","15","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_with_removed_dataset_ok"," + Publishing a version with a dataset removed should succeed + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","31","tests.unit.backend.layers.business","test_business","TestGetEntitiesBySchema","","","test_get_latest_published_collection_versions_by_schema"," + Test fetching index of most recently published collection versions with datasets matching a given + CxG schema version + " +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","18","tests.unit.processing","test_dataset_metadata_update","TestDatasetMetadataUpdaterWorker","","","test_update_cxg__with_spatial_deepzoom_assets","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","5","tests.unit.backend.layers.business","test_business","TestUpdateCollection","","","test_update_collection_partial_ok"," + `update_collection` should support partial updates: if only a subset of the fields are specified, + the previous field should not be modified + " +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","11","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_when_item_is_not_in_config_not_in_env_we_raise","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","12","tests.unit.processing","test_rollback","","","","test__clean_up","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","41","tests.unit.backend.layers.business","test_business","TestGetAllCollections","","","test_get_all_collections_published_ok"," + If published filter flag is True, only published, non-tombstoned collections should be returned + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","18","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__list_collection__check_owner__auth","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestAuthToken","","","test__post_token__201","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","34","tests.unit.backend.layers.api","test_portal_api","TestRevision","","","test__start_revision_of_a_collection__201"," + Start a revision of a collection. + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","19","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_collection_id_retrieves_published_version_by_collection_id_if_revision"," + When there is a revision of a published collection, GET /collections/:collection_id retrieves: + 1. the published version given the canonical collection_id + 2. the revision if given the version_id + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters30]","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","10","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__update_private_collection_dataset__ok","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection_new_doi_updates_metadata","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","0","tests.unit.backend.layers.utils","test_uri","TestRegisteredSources","","","test_register_pos","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","17","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_dataset_is_primary_data_shape","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","11","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__missing_rds","" +"skipped","Mon Oct 07 20:17:48 GMT 2024","Mon Oct 07 20:17:48 GMT 2024","1","tests.unit.wmg_processing","test_cube_pipeline","TestCubePipe","","","test_pipeline_creates_files"," + Test the pipeline successfully copies from mock s3, loads corpus and correctly builds cube/cell_ordering files + and correctly uploads files to mock s3 + " +"passed","Mon Oct 07 20:17:20 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","39","tests.unit.backend.layers.api","test_curation_api","TestDeleteCollection","","","test__delete_revision_collection_by_collection_version_id","" +"passed","Mon Oct 07 20:17:23 GMT 2024","Mon Oct 07 20:17:23 GMT 2024","5","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_nonexistent_collection_403","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[data_source-google]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[other-://]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters11]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","11","tests.unit.processing","test_spatial_assets_utils","","","","test__convert_uns_to_cxg_group","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","2","tests.unit.processing.schema_migration","test_collection_migrate","TestCollectionMigrate","","","test_migrate_private_collection","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","1","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[lab_website-http://somewhere.org/path/?abcd=123]","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","2","tests.unit.processing","test_matrix_utils","TestEnforceCanonical","","","test_adata_with_noncanonical_X_and_raw_X","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","12","tests.unit.backend.layers.business","test_business","TestSetCollectionVersionDatasetsOrder","","","test_set_collection_version_datasets_order_replace_dataset_ok"," + Replacing a dataset in a collection version does not alter the custom order of the datasets. + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_add_dataset_with_invalid_link_fail"," + Adding a dataset with a wrong link should result in a failure + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_all_user_datasets_for_index_requires_auth","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[protocol-.com]","" +"passed","Mon Oct 07 20:18:35 GMT 2024","Mon Oct 07 20:18:35 GMT 2024","1","tests.unit.processing","test_extract_metadata","TestProcessingValidate","","","test_get_spatial_metadata__is_single_true_and_no_library_id","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestS3Credentials","","","test__generate_s3_credentials__Not_Owner","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters85]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_order_missing_datasets__400","" +"passed","Mon Oct 07 20:17:45 GMT 2024","Mon Oct 07 20:17:46 GMT 2024","394","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_request_multi_primary_dims_only_with_compare__returns_200_and_correct_response","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_add_dataset_to_unpublished_collection_ok"," + A dataset can be added to a collection when `ingest_dataset` is called. + The resulting dataset should be empty and in a state ready for processing. + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","12","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_create_collection_version_multiple_auto_versions_fails"," + Given a canonical collection with a published version and an unpublished version with is_auto_version == True, + creating another unpublished collection version where is_auto_verison is False will fail. + " +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPostCollection","","","test__create_collection__OK","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","7","tests.unit.processing","test_rollback","","","","test_rollback_private_collection_list","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","17","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_get_order_custom_sort__OK","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[data_source-http://somewhere.org/path/?abcd=123]","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","5","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test_get_collection_with_no_datasets","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters31]","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","2","tests.unit.processing","test_process_validate","ProcessingTest","","","test_populate_dataset_citation__no_publication_doi","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__collection_level_processing_status__FAILURE","" +"passed","Mon Oct 07 20:17:44 GMT 2024","Mon Oct 07 20:17:44 GMT 2024","2","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_missing_organism__request_returns_400","" +"passed","Mon Oct 07 20:17:43 GMT 2024","Mon Oct 07 20:17:46 GMT 2024","2512","tests.unit.wmg_processing","test_cell_type_ordering","CellTypeOrderingTests","","","test_cell_type_orderings","" +"passed","Mon Oct 07 20:17:32 GMT 2024","Mon Oct 07 20:17:32 GMT 2024","66","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__filter_request_with_filter_dims__returns_valid_filter_dims__base_case","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","11","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__missing_cxg","" +"passed","Mon Oct 07 20:18:36 GMT 2024","Mon Oct 07 20:18:36 GMT 2024","133","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__to_cxg__simple_anndata_no_corpora_and_sparse","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","9","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_with_all_removed_datasets__409"," + Unable to publish a revision with no datasets. + " +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__collection_level_processing_status__INITIALIZED_as_PENDING","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters12]","" +"skipped","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","1","tests.unit.backend.layers.common","test_auth0_manager","TestSession","","","test_session_refresh","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[raw_data-://]","" +"passed","Mon Oct 07 20:17:48 GMT 2024","Mon Oct 07 20:17:48 GMT 2024","4","tests.unit.wmg_processing","test_cube_pipeline","TestCubePipe","","","test_exception_handle_catches_errors","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters7]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__cancel_dataset_download__dataset_does_not_exist","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[doi-.com]","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","8","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_create_empty_dataset_version_for_current_dataset__error_if_published","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","0","tests.unit.backend.layers.utils","test_uri","TestRegisteredSources","","","test_register_neg","" +"passed","Mon Oct 07 20:20:10 GMT 2024","Mon Oct 07 20:20:13 GMT 2024","3198","tests.unit.wmg_processing","test_ontology_labels","OntologyLabelTests","","","test__ontology_term_label","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","13","tests.unit.backend.layers.api","test_portal_api","TestRevision","","","test__revision_not_owner__403"," + Start a revision on a collection as a non-owner. + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters80]","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","15","tests.unit.backend.layers.api","test_curation_api","TestDeleteDataset","","","test__delete_dataset_by_version_id"," + Calling DELETE /collections/:collection_id/datasets/:dataset_id should return a 403 in all cases with auth + credentials, and a 401 without auth credentials + " +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","0","tests.unit.backend.layers.utils","test_semvar_utils","TestSemvarUtils","","","test__prerelease_properly_formatted_semvar__returns_true","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","8","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__can_publish_non_owned_collection_as_super_curator","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_invalid_email[email@.com]","" +"passed","Mon Oct 07 20:18:35 GMT 2024","Mon Oct 07 20:18:35 GMT 2024","14","tests.unit.processing","test_extract_metadata","TestProcessingValidate","","","test_extract_metadata_find_raw_layer","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","4","tests.unit.processing","test_dataset_metadata_update","TestUpdateMetadataHandler","","","test_update_metadata__current_dataset_version_bad_processing_status","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","8","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_public_collection_verify_fix_consortia_sort_order_OK","" +"passed","Mon Oct 07 20:18:05 GMT 2024","Mon Oct 07 20:18:11 GMT 2024","5906","tests.unit.backend.wmg","test_query","QueryTest","","","test__query_marker_genes_cube__returns_correct_top_10_markers","" +"passed","Mon Oct 07 20:17:32 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","2056","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_value_of_existing_deleted_secret_raises_exception","" +"passed","Mon Oct 07 20:17:46 GMT 2024","Mon Oct 07 20:17:48 GMT 2024","1868","tests.unit.wmg_processing","test_cube_pipeline","TestCubePipe","","","test__pipeline_fails_if_census_schema_version_unsupported","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","0","tests.unit.processing","test_process_download","","","","test_estimate_resource_requirements_positive[adata2-memory_settings2-expected2]","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","38","tests.unit.backend.layers.business","test_business","TestGetAllCollections","","","test_get_all_collections_unfiltered_ok"," + All the collection versions for all collections should be returned by `get_collections`, including published, + unpublished, and all owners. + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","1","tests.unit.backend.layers.api","test_curation_api","TestPutLink","","","test__new_from_link__OK"," + Calling PUT /datasets/:dataset_id should succeed if a valid link is uploaded by the owner of the collection or + a super curator + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","4","tests.unit.processing","test_processing","ProcessingTest","","","test_process_cxg_success","" +"passed","Mon Oct 07 20:26:05 GMT 2024","Mon Oct 07 20:26:05 GMT 2024","9","tests.unit.backend.cellguide.pipeline","test_valid_explorer_cxgs","TestValidExplorerCxgs","","","test__valid_explorer_cxgs","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollectionsCurators","","","test_update_non_owned_private_collection_as_super_curator__ok","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","1","tests.unit.processing.schema_migration","test_collection_migrate","TestCollectionMigrate","","","test_filter_schema_version","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters15]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters88]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_spatial_assets_utils","","","","test__crop_to_aspect_ratio[23-11]"," + Test the cropping method to ensure the image is cropped to a square + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[data_source-https://]","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","2","tests.unit.processing.schema_migration","test_dataset_migrate","TestDatasetMigrate","","","test_dataset_migrate_published","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_invalid_characters_in_field[text\x1f]","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","8","tests.unit.backend.layers.api","test_portal_api","TestCollectionPutUploadLink","","","test__reupload_public_dataset__403","cannot reupload a public published dataset" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","138","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test_get_collection_dynamic_fields","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_rollback","","","","test_rollback[rollback_args0]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[protocol-https://www.google.com]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","4","tests.unit.processing","test_spatial_assets_utils","","","","test__create_deep_zoom_assets","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","11","tests.unit.backend.layers.business","test_business","TestSetPreviousDatasetVersion","","","test_revision_restoring_previously_published_dataset","" +"passed","Mon Oct 07 20:22:08 GMT 2024","Mon Oct 07 20:22:14 GMT 2024","5733","tests.unit.backend.cellguide.pipeline","test_metadata_generator","TestMetadataGenerator","","","test__tissue_metadata_generator","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","9","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_order_published_collection__403","" +"passed","Mon Oct 07 20:20:36 GMT 2024","Mon Oct 07 20:21:59 GMT 2024","82767","tests.unit.backend.cellguide.pipeline","test_gpt_descriptions","TestGptDescriptionGenerator","","","test__gpt_description_generator","" +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","2","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__published_doi_used_if_exists_for_preprint","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","20","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionID","","","test__get_unbpublished_revision__OK","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_spatial_assets_utils","","","","test__crop_to_aspect_ratio[200-150]"," + Test the cropping method to ensure the image is cropped to a square + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","1","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[lab_website-https://]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters65]","" +"passed","Mon Oct 07 20:17:20 GMT 2024","Mon Oct 07 20:17:20 GMT 2024","5","tests.unit.backend.layers.api","test_app","TestAPI","","","test__api_index__returns_200","If this fails then the server does not work" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","10","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_collection_id_retrieves_published_version_by_collection_id"," + GET /collections/:collection_id retrieves the published version given a canonical collection_id + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestUpdateCollection","","","test_update_collection_change_doi"," + A collection updated with a new DOI should get new publisher metadata from Crossref + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters43]","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_api_double_calls","Checks that, if a gene fails on the first ID search, ncbi_provider will search again (with gene name)" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","TestTypeConversionUtils","","","test__get_schema_type_hint_from_dtype","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","2","tests.unit.processing","test_handle_error","TestCleanupArtifacts","","","test_cleanup_artifacts__elete_many_from_s3_error","Check that delete_many_from_s3 errors are logged but do not raise exceptions." +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","14","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_published_dataset__fail","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","5","tests.unit.backend.layers.api","test_curation_api","TestAuthToken","","","test__post_token__401_old_token","The old token fails to authenticate" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","18","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_cleanup_with_auto_version"," + When publishing an auto_version, do NOT cleanup dataset versions from an open revision + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_add_dataset_artifact_wrong_type_fail"," + Adding a dataset artifact with an unsupported type should fail + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[lab_website-google.com]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters25]","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_private_collection_dataset_invalid_collection_404","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","0","tests.unit.backend.layers.utils","test_json","TestCuratorJSONEncoder","","","test_datetime_with_millis","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters77]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","2","tests.unit.processing","test_rollback","","","","test_rollback[rollback_args2]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","5","tests.unit.backend.layers.business","test_business","TestConcurrentUpdates","","","test_concurrency","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters64]","" +"passed","Mon Oct 07 20:18:36 GMT 2024","Mon Oct 07 20:18:36 GMT 2024","23","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__create_h5ad_data_file__var_index_name_specified_not_unique_raises_exception","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__remove_collection_consortia","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters20]","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__get_dataset_asset__asset_NOT_FOUND","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_no_auth__OK","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","49","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_dataset_shape","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","6","tests.unit.backend.layers.api","test_curation_api","TestGetDatasets","","","test_get_dataset_no_assets","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","9","tests.unit.processing","test_dataset_metadata_update","TestDatasetMetadataUpdaterWorker","","","test_update_h5ad","" +"passed","Mon Oct 07 20:18:35 GMT 2024","Mon Oct 07 20:18:35 GMT 2024","3","tests.unit.processing","test_dataset_submissions","TestDatasetSubmissions","","","test__upload_update_by_dataset_id_super__OK"," + Processing starts when an update of a dataset is uploaded by its ID by a super curator + " +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","0","tests.unit.backend.layers.utils","test_semvar_utils","TestSemvarUtils","","","test__release_only_prerelease_properly_formatted_semvar__returns_false","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_artifact_metadata_ok"," + The dataset artifact metadata can be updated using `update_dataset_artifact_metadata` + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","13","tests.unit.backend.layers.api","test_portal_api","TestPublishRevision","","","test__publish_revision_with_new_dataset__OK"," + Publish a revision with new datasets. + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","2","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__list_collection_options__no_allow","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","4762","tests.unit.processing","test_processing","ProcessingTest","","","test_process_all","" +"passed","Mon Oct 07 20:18:37 GMT 2024","Mon Oct 07 20:18:37 GMT 2024","0","tests.unit.processing","test_handle_error","","","","test_parse_event_without_error_cause","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestDatasetArtifactMetadataUpdates","","","test_trigger_dataset_artifact_update__error_if_published","" +"passed","Mon Oct 07 20:18:37 GMT 2024","Mon Oct 07 20:19:02 GMT 2024","25084","tests.unit.processing","test_handle_error","","","","test_migration_event_does_not_trigger_slack","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","0","tests.unit.backend.layers.utils","test_json","TestCuratorJSONEncoder","","","test_datetime","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[raw_data-.com]","" +"passed","Mon Oct 07 20:17:29 GMT 2024","Mon Oct 07 20:18:37 GMT 2024","67647","tests.unit.backend.de.api","test_v1","DeAPIV1Tests","","","test__differentialExpression_returns_expected_results","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","0","tests.unit.processing","test_color_conversion_utils","TestColorConversionUtils","","","test_convert_color_to_hex_format","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","92","tests.unit.backend.layers.business","test_business","TestGetAllDatasets","","","test_get_all_private_datasets_ok"," + Private datasets the user is authorized to view can be retrieved with `get_all_private_collection_versions_with_datasets`. + " +"passed","Mon Oct 07 20:17:20 GMT 2024","Mon Oct 07 20:17:20 GMT 2024","6","tests.unit.backend.layers.api","test_app","TestAPI","","","test__dp_api_swagger_ui__returns_200","" +"passed","Mon Oct 07 20:17:37 GMT 2024","Mon Oct 07 20:17:37 GMT 2024","30","tests.unit.wmg_processing","test_cell_type_ancestors","CellTypeAncestorTests","","","test_cell_type_ancestors","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","11","tests.unit.processing","test_rollback","","","","test_rollback_published_collections","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters5]","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","1","tests.unit.processing.schema_migration","test_publish_revisions","TestPublishRevisions","","","test_check_datasets_not_latest_version","Check datasets when one of the dataset has not been migrated to the latest schema version." +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","5","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_fails_on_mismatching_dataset_schema_versions"," + `publish_collection_version` should fail if called on a collection version with datasets that have mismatching + schema versions + " +"passed","Mon Oct 07 20:17:23 GMT 2024","Mon Oct 07 20:17:23 GMT 2024","11","tests.unit.backend.layers.api","test_curation_api","TestPostRevision","","","test__post_revision__Super_Curator","" +"passed","Mon Oct 07 20:17:23 GMT 2024","Mon Oct 07 20:17:23 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_super","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","3","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses__invalid_cxg_status_0","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","8","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_public_collection_dataset_not_authorized_403","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__cancel_dataset_download__user_not_collection_owner","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__Not_Owner","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[doi-http://somewhere.org/path/?abcd=123]","" +"passed","Mon Oct 07 20:17:31 GMT 2024","Mon Oct 07 20:17:31 GMT 2024","20","tests.unit.backend.wmg.api.common","test_rollup","","","","test__rollup[no_compare_dim_one_ancestor_cell_type_missing_in_one_tissue_but_exists_in_all_others-input_cell_counts_df1-expected_cell_counts_df1-input_gene_expr_df1-expected_gene_expr_df1]"," + Test that the `rollup` function correctly accumulates (or rolls up) gene-expression + values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths + grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ). + + The input: + + 1. A cell type ontology subgraph consisting of 4 cell types. + + CL:0000127 + ├── CL:0000644 + ├── CL:0002605 + └── CL:0002627 + + 2. A gene expression dataframe consisting of expression numeric values for each + (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. + 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id. + This value is held in a column called `n_cells_tissue`. + 6. A cell counts dataframe that consists of cell counts for each + (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. + 7. We set the `n_cells_tissue` column values to 1000 for all rows + in the gene expression dataframe. + 8. We set all other numeric column values to `1` in the gene expression dataframe. + + The expected output: + + 1. A rolled up gene expression dataframe. + 2. A rolled up cell counts dataframe. + 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe + does not change for all rows because it should not be rolled up the cell type ontology + ancestor paths. + 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`) + in the rolled up gene expression dataframe hold the correct rolled up values. + 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct + rolled up values. + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_normalizes_doi","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_fails_if_data_missing","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_spatial_assets_utils","","","","test__fetch_image_hires"," + Test that _fetch_image returns the hires image when fullres is not present. + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollectionPostUploadLink","","","test__oversized__413","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","14","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_delete_collection_version_ok"," + A collection version can be deleted using `delete_collection_version` + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","27","tests.unit.backend.layers.api","test_portal_api","TestRevision","","","test__revision__403"," + Starting a revision on a revision. + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","7","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__set_collection_version_datasets_order_invalid_collection__403","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","31","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_value_of_unknown_secret_raises_exception","" +"passed","Mon Oct 07 20:17:46 GMT 2024","Mon Oct 07 20:17:46 GMT 2024","119","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__query_single_primary_dims__returns_200_and_correct_response","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","5","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__create_key__201","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","13","tests.unit.backend.layers.api","test_curation_api","TestPatchDataset","","","test_patch_revision_dataset_owner_202","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","4","tests.unit.backend.layers.business","test_business","TestGetCollectionVersion","","","test_get_collection_version_for_unpublished_collection_ok"," + An unpublished collection version can be obtained using `get_collection_version` + " +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_artifacts_delete_cxg","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","10","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_create_collection_version_ok"," + A collection version can be created using `create_collection_version` + " +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","0","tests.unit.scripts","test_zenhub_close","TestFilterIssues","","","test_with_blocking_issues_in_issue_list","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","6","tests.unit.backend.layers.api","test_curation_api","TestPutLink","","","test__from_link__no_auth"," + Calling PUT /datasets/:dataset_id should fail with 401 Unauthorized if the user is not authenticated + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","21","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_all_collections_for_index"," + The `collections/index` endpoint should only return public collections + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","1","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[lab_website-.com]","" +"passed","Mon Oct 07 20:17:46 GMT 2024","Mon Oct 07 20:17:46 GMT 2024","440","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__schema4__filter_request_with_empty_criteria__excludes_comma_delimited_ethnicity_values","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","41","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_when_item_is_in_config_but_not_in_env_and_use_env_is_not_set_we_use_config","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","0","tests.unit.backend.layers.utils","test_semvar_utils","TestSemvarUtils","","","test__release_only_properly_formatted_semvar__returns_true","" +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","1","tests.unit.backend.common","test_citation","TestCitation","","","test__format_citation","" +"passed","Mon Oct 07 20:18:34 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","3","tests.unit.processing","test_dataset_metadata_update","TestValidArtifactStatuses","","","test_has_valid_artifact_statuses_1","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","1","tests.unit.processing.schema_migration","test_publish_revisions","TestPublishRevisions","","","test_run_pos","Positive test case for run method." +"passed","Mon Oct 07 20:18:36 GMT 2024","Mon Oct 07 20:18:36 GMT 2024","91","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__to_cxg__simple_anndata_with_different_var_index_than_h5ad","" +"passed","Mon Oct 07 20:17:23 GMT 2024","Mon Oct 07 20:17:23 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_not_owner_403","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","2","tests.unit.processing.schema_migration","test_report","","","","test_report","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","3","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__create_key__401","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","0","tests.unit.processing","test_process_download","","","","test_get_job_definion_name[environ0-dp-test-stack-ingest-process-fake_dataset_id]","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","2","tests.unit.backend.layers.business","test_business","TestCreateCollection","","","test_create_collection_with_valid_doi_ok"," + A collection can be created with a valid DOI, and the publisher metadata will be added + to the collection + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters46]","" +"passed","Mon Oct 07 20:17:31 GMT 2024","Mon Oct 07 20:17:31 GMT 2024","373","tests.unit.backend.wmg.api.common","test_expression_dotplot","ExpressionDotPlotTest","","","test__query_non_indexed_dim_single_and_multi_valued__returns_correct_result","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","2","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_api_search_calls"," + In combination with test_api_fetch_calls, checks external API call in search requests (_search_gene_uid) + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","6","tests.unit.backend.layers.api","test_portal_api","TestCollectionDeletion","","","test_delete_collection_version__already_deleted__403","" +"passed","Mon Oct 07 20:17:20 GMT 2024","Mon Oct 07 20:17:20 GMT 2024","14","tests.unit.backend.layers.api","test_curation_api","TestDeleteCollection","","","test__delete_private_collection","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestDeleteDataset","","","test_delete_artifacts_artifact_type_doesnt_match_regex","" +"passed","Mon Oct 07 20:18:36 GMT 2024","Mon Oct 07 20:18:36 GMT 2024","24","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__create_h5ad_data_file__reads_anndata_successfully","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","27","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__get_collection_id__ok","Verify the test collection exists and the expected fields exist." +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters63]","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_add_dataset_to_non_existing_collection_fail"," + Calling `ingest_dataset` on a collection that does not exist should fail + " +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_with_auth__OK_2","The 'revising_in' attribute is None for collections which lack a revision" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestSetPreviousDatasetVersion","","","test_private_restoring_previously_replaced_dataset","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","5","tests.unit.backend.layers.business","test_business","TestSetCollectionVersionDatasetsOrder","","","test_set_collection_version_datasets_order_invalid_dataset_fail"," + Attempting to set the order of the datasets in a collection version with a list that contains an invalid + dataset should fail. + " +"passed","Mon Oct 07 20:17:35 GMT 2024","Mon Oct 07 20:17:35 GMT 2024","2","tests.unit.backend.common","test_crossref_provider","TestCrossrefProvider","","","test__provider_calls_crossref_if_api_key_defined","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestS3Credentials","","","test__generate_s3_credentials__No_Auth","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters6]","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","19","tests.unit.backend.layers.business","test_business","TestUpdateCollection","","","test_update_collection_change_doi__trigger_dataset_artifact_updates"," + A collection updated with a new DOI and containing datasets should trigger artifact updates to update citation + for each dataset + " +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","9","tests.unit.backend.layers.api","test_curation_api","TestPatchCollectionID","","","test__update_collection__links_None_does_not_remove_publisher_metadata","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_rollback","","","","test_rollback__unsupported_rollback_type","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","1","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_api_fetch_calls"," + Mocks API key for NCBI requests, checks call counts and the correct external API calls. + Will break if the external API call is down! + " +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","1","tests.unit.backend.layers.business","test_business","TestCreateCollection","","","test_create_collection_with_consortia_ok"," + A collection with consortia can be created using `create_collection` + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","5","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection_consortia","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__post_collection_rejects_invalid_doi","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","3","tests.unit.processing","test_rollback","","","","test_rollback_private_dataset[True]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test_invalid_characters_in_field[\x00some data]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[other-.com]","" +"passed","Mon Oct 07 20:18:36 GMT 2024","Mon Oct 07 20:18:36 GMT 2024","23","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__slash_in_attribute_name","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters23]","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","40","tests.unit.backend.layers.utils","test_aws_secret","TestAwsSecret","","","test_value_of_existing_secret_returns_value","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestCollectionsCurators","","","test_delete_non_owned_private_collection_as_super_curator__ok","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","3","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_status_ok"," + The dataset processing status can be updated using `update_dataset_status` + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","3","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_gene_info_with_id"," + Successfully calls NCBIProvider fetch and search functions with a parameter of only gene ID + " +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","2","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__dataset_meta__404","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","9","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_create_empty_dataset_version_for_current_dataset","" +"passed","Mon Oct 07 20:18:11 GMT 2024","Mon Oct 07 20:18:11 GMT 2024","344","tests.unit.backend.wmg","test_query","QueryPrimaryFilterDimensionsTest","","","test__single_dimension__returns_all_dimension_and_terms","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","1","tests.unit.processing.schema_migration","test_collection_migrate","TestCollectionMigrate","","","test_create_migration_revision__private","" +"passed","Mon Oct 07 20:17:22 GMT 2024","Mon Oct 07 20:17:22 GMT 2024","1","tests.unit.scripts","test_zenhub_close","TestCloseReadyForProd","","","test_close_ready_for_prod_no_issues","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","6","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__collection_level_processing_status__SUCCESS","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_with_invalid_collection_consortia","" +"passed","Mon Oct 07 20:17:32 GMT 2024","Mon Oct 07 20:17:32 GMT 2024","2","tests.unit.backend.wmg.api","test_v2","WmgApiV2Tests","","","test__filter_request_with_query_key_not_specified_in_api_spec_returns_400","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:34 GMT 2024","387","tests.unit.processing","test_color_conversion_utils","TestColorConversionUtils","","","test_anndata_colors_to_cxg_colors","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","7","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_artifact_metadata_public_collection_error"," + Attemping to update a dataset in a public collection raises an exception. + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[other-https://www.google.com]","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","1","tests.unit.processing","test_handle_error","TestCleanupArtifacts","","","test_cleanup_artifacts__OK[validate]","Check that all artifacts are deleted for the given cases." +"skipped","Mon Oct 07 20:20:36 GMT 2024","Mon Oct 07 20:20:36 GMT 2024","0","tests.unit.backend.cellguide.pipeline","test_computational_marker_genes","MarkerGeneCalculatorTests","","","test__marker_gene_calculation","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__OK[doi-https://www.google.com]","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","173","tests.unit.backend.layers.utils","test_uri","TestS3URI","","","test__file_info__returns_file_size","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","75","tests.unit.backend.layers.api","test_portal_api","TestDataset","","","test__explorer_portal_integration"," + Tests the explorer <-> portal integration. + The steps carried out by this test are: + 1. Generate the explorer_url + 2. Call the `get_dataset_identifiers` endpoint, retrieve `collection_id` and `dataset_id` from there + 3. Call the GET /collections/:collection_id endpoint, locate the dataset + " +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","2","tests.unit.processing.schema_migration","test_collection_migrate","TestCollectionMigrate","","","test_migrate_published_collection","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestUpdateCollectionDatasets","","","test_replace_dataset_in_wrong_status_fail"," + Calling `ingest_dataset` and specifying an existing dataset should fail if the dataset is not in the + final status + " +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","44","tests.unit.backend.layers.api","test_curation_api","TestGetCollectionVersionID","","","test_get_collection_version_4xx","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","0","tests.unit.backend.layers.utils","test_math_utils","TestMathUtils","","","test__sizeof_formatted__converts_to_gb","" +"passed","Mon Oct 07 20:18:35 GMT 2024","Mon Oct 07 20:18:35 GMT 2024","826","tests.unit.processing","test_extract_metadata","TestProcessingValidate","","","test_extract_metadata","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","1","tests.unit.backend.layers.utils","test_api_key","TestAPIKey","","","test_generate","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","2","tests.unit.processing","test_handle_error","TestCleanupArtifacts","","","test_cleanup_artifacts__no_buckets","Check that no files are deleted if buckets are not specified." +"passed","Mon Oct 07 20:17:23 GMT 2024","Mon Oct 07 20:17:23 GMT 2024","7","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_no_auth_401","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters3]","" +"passed","Mon Oct 07 20:17:23 GMT 2024","Mon Oct 07 20:17:23 GMT 2024","4","tests.unit.backend.layers.api","test_curation_api","TestPostDataset","","","test_post_datasets_with_collection_version_id_403","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters75]","" +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters52]","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","145","tests.unit.backend.layers.business","test_business","TestCollectionOperations","","","test_publish_version_with_replaced_dataset_ok"," + Publishing a version with a dataset replaced should succeed + " +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","1","tests.unit.processing","test_handle_error","TestCleanupArtifacts","","","test_cleanup_artifacts__OK[]","Check that all artifacts are deleted for the given cases." +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","39","tests.unit.backend.layers.utils","test_secret_config","TestSecretConfig","","","test_when_item_is_not_in_config_but_is_in_env_and_use_env_is_set_we_use_env","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","17","tests.unit.backend.layers.api","test_portal_api","TestCollection","","","test__list_collection__check_owner__no_auth","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","4","tests.unit.backend.layers.api","test_portal_api","TestUpdateCollection","","","test__update_collection_remove_doi_deletes_metadata","" +"passed","Mon Oct 07 20:19:25 GMT 2024","Mon Oct 07 20:19:25 GMT 2024","0","tests.unit.processing","test_matrix_utils","TestMatrixUtils","","","test__is_matrix_sparse__partially_populated_dense_matrix_returns_false","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","3","tests.unit.backend.layers.api","test_portal_api","TestRevision","","","test__revision_nonexistent__403"," + Start a revision on a non-existing collection. + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","1","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters79]","" +"passed","Mon Oct 07 20:18:35 GMT 2024","Mon Oct 07 20:18:35 GMT 2024","14","tests.unit.processing","test_h5ad_data_file","TestH5ADDataFile","","","test__create_h5ad_data_file__non_h5ad_raises_exception","" +"passed","Mon Oct 07 20:17:24 GMT 2024","Mon Oct 07 20:17:24 GMT 2024","3","tests.unit.backend.layers.api","test_gene_info","GeneInfoAPIv1Tests","","","test_gene_info_with_id_and_name"," + Successfully calls NCBIProvider fetch and search functions with both ID and name params + " +"passed","Mon Oct 07 20:17:32 GMT 2024","Mon Oct 07 20:17:32 GMT 2024","23","tests.unit.backend.wmg.api.common","test_rollup","","","","test__rollup[with_ethnicity_compare_dim_on_single_tissue-input_cell_counts_df4-expected_cell_counts_df4-input_gene_expr_df4-expected_gene_expr_df4]"," + Test that the `rollup` function correctly accumulates (or rolls up) gene-expression + values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths + grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ). + + The input: + + 1. A cell type ontology subgraph consisting of 4 cell types. + + CL:0000127 + ├── CL:0000644 + ├── CL:0002605 + └── CL:0002627 + + 2. A gene expression dataframe consisting of expression numeric values for each + (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. + 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id. + This value is held in a column called `n_cells_tissue`. + 6. A cell counts dataframe that consists of cell counts for each + (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple. + 7. We set the `n_cells_tissue` column values to 1000 for all rows + in the gene expression dataframe. + 8. We set all other numeric column values to `1` in the gene expression dataframe. + + The expected output: + + 1. A rolled up gene expression dataframe. + 2. A rolled up cell counts dataframe. + 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe + does not change for all rows because it should not be rolled up the cell type ontology + ancestor paths. + 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`) + in the rolled up gene expression dataframe hold the correct rolled up values. + 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct + rolled up values. + " +"passed","Mon Oct 07 20:19:30 GMT 2024","Mon Oct 07 20:19:30 GMT 2024","0","tests.unit.processing","test_type_conversion_utils","","","","test_type_inference[parameters92]","" +"passed","Mon Oct 07 20:17:34 GMT 2024","Mon Oct 07 20:17:34 GMT 2024","0","tests.unit.backend.layers.utils","test_json","TestCustomJSONEncoder","","","test_illegal_characters","" +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","1","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[doi-google]","" +"passed","Mon Oct 07 20:18:33 GMT 2024","Mon Oct 07 20:18:33 GMT 2024","1","tests.unit.processing.schema_migration","test_collection_migrate","TestCollectionMigrate","","","test_create_migration_revision__published_no_revision","" +"passed","Mon Oct 07 20:17:21 GMT 2024","Mon Oct 07 20:17:21 GMT 2024","3","tests.unit.backend.layers.api","test_curation_api","TestGetCollections","","","test__get_collections_no_auth_visibility_private__403","" +"passed","Mon Oct 07 20:17:25 GMT 2024","Mon Oct 07 20:17:25 GMT 2024","6","tests.unit.backend.layers.auth","test_auth_keys","TestKeys","","","test__regenerate_key__201","" +"passed","Mon Oct 07 20:19:14 GMT 2024","Mon Oct 07 20:19:14 GMT 2024","35","tests.unit.wmg_processing","test_filter_relationships","FilterRelationshipsTests","","","test_filter_relationships","" +"passed","Mon Oct 07 20:17:26 GMT 2024","Mon Oct 07 20:17:26 GMT 2024","6","tests.unit.backend.layers.business","test_business","TestUpdateDataset","","","test_update_dataset_artifact_metadata_sanitized_ok"," + The dataset artifact metadata can be updated with sanitized values. + " +"passed","Mon Oct 07 20:17:27 GMT 2024","Mon Oct 07 20:17:27 GMT 2024","0","tests.unit.backend.layers.common","test_validation","","","","test__link__INVALID[doi-://]","" +"passed","Mon Oct 07 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-35, -34, -33, -32, -31, -30, -29, -28, -27, -26,\n -25, -24, -23, -22, -21, -20, -19, -18, -17, -16, -15,\n -14, -13, -12, -11, -10, -9, -8, -7, -6, -5, -4,\n -3, -2, -1, 0, 1, 2, 3, 4, 5, 6, 7,\n 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18,\n 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29,\n 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40,\n 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62,\n 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73,\n 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84,\n 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95,\n 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106,\n 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117,\n 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, -128,\n -127, -126, -125, -124, -123, -122, -121, -120, -119, -118, -117,\n -116, -115, -114, -113, -112, -111, -110, -109, -108, -107, -106,\n -105, -104, -103, -102, -101, -100, -99, -98, -97, -96, -95,\n -94, -93, -92, -91, -90, -89, -88, -87, -86, -85, -84,\n -83, -82, -81, -80, -79, -78, -77, -76, -75, -74, -73,\n -72, -71, -70, -69, -68, -67, -66, -65, -64, -63, -62,\n -61, -60, -59, -58, -57, -56, -55, -54, -53, -52, -51,\n -50, -49, -48, -47, -46, -45, -44, -43, -42, -41, -40,\n -39, -38, -37, -36, -35, -34, -33, -32, -31, -30, -29,\n -28, -27, -26, -25, -24, -23, -22, -21, -20, -19, -18,\n -17, -16, -15, -14, -13, -12, -11, -10, -9, -8, -7,\n -6, -5, -4, -3, -2, -1, 0, 1, 2, 3, 4,\n 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,\n 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26,\n 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37,\n 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48,\n 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59,\n 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70,\n 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,\n 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92,\n 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,\n 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125,\n 126, 127, -128, -127, -126, -125, -124, -123, -122, -121, -120,\n -119, -118, -117, -116, -115, -114, -113, -112, -111, -110, -109,\n -108, -107, -106, -105, -104, -103, -102, -101, -100, -99, -98,\n -97, -96, -95, -94, -93, -92, -91, -90, -89, -88, -87,\n -86, -85, -84, -83, -82, -81, -80, -79, -78, -77, -76,\n -75, -74, -73, -72, -71, -70, -69, -68, -67, -66, -65,\n -64, -63, -62, -61, -60, -59, -58, -57, -56, -55, -54,\n -53, -52, -51, -50, -49, -48, -47, -46, -45, -44, -43,\n -42, -41, -40, -39, -38, -37, -36, -35, -34, -33, -32,\n -31, -30, -29, -28, -27, -26, -25, -24, -23, -22, -21,\n -20, -19, -18, -17, -16, -15, -14, -13, -12, -11, -10,\n -9, -8, -7, -6, -5, -4, -3, -2, -1, 0, 1,\n 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23,\n 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34,\n 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45,\n 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56,\n 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67,\n 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,\n 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89,\n 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100,\n 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111,\n 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122,\n 123, 124, 125, 126, 127, -128, -127, -126, -125, -124, -123,\n -122, -121, -120, -119, -118, -117, -116, -115, -114, -113, -112,\n -111, -110, -109, -108, -107, -106, -105, -104, -103, -102, -101,\n -100, -99, -98, -97, -96, -95, -94, -93, -92, -91, -90,\n -89, -88, -87, -86, -85, -84, -83, -82, -81, -80, -79,\n -78, -77, -76, -75, -74, -73, -72, -71, -70, -69, -68,\n -67, -66, -65, -64, -63, -62, -61, -60, -59, -58, -57,\n -56, -55, -54, -53, -52, -51, -50, -49, -48, -47, -46,\n -45, -44, -43, -42, -41, -40, -39, -38, -37, -36, -35,\n -34, -33, -32, -31, -30, -29, -28, -27, -26, -25],\n dtype=int8), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters3]","uid":"bd2efe314e8e26da","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370403,"stop":1728332370403,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ..\n995 -29\n996 -28\n997 -27\n998 -26\n999 -25\nLength: 1000, dtype: int8, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters4]","uid":"becc5e79c2a9bda","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370407,"stop":1728332370407,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n -34, -33, -32, -31, -30, -29, -28, -27, -26, -25],\n dtype='int8', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters5]","uid":"1128a8290b8c4af9","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370410,"stop":1728332370411,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters6]","uid":"80a441aeacdefa8f","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370416,"stop":1728332370416,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 0, 1, 2, 3,\n 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16,\n 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29,\n 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42,\n 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55,\n 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68,\n 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,\n 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94,\n 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107,\n 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120,\n 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133,\n 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146,\n 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159,\n 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172,\n 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185,\n 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198,\n 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211,\n 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224,\n 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237,\n 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250,\n 251, 252, 253, 254, 255, 0, 1, 2, 3, 4, 5, 6, 7,\n 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20,\n 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,\n 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,\n 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59,\n 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72,\n 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85,\n 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,\n 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111,\n 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124,\n 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137,\n 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150,\n 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163,\n 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176,\n 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189,\n 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202,\n 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215,\n 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228,\n 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241,\n 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254,\n 255, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11,\n 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,\n 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37,\n 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,\n 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,\n 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76,\n 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89,\n 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102,\n 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115,\n 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128,\n 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141,\n 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154,\n 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167,\n 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180,\n 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193,\n 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206,\n 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219,\n 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231],\n dtype=uint8), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters7]","uid":"22d051beb537720e","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370422,"stop":1728332370422,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 227\n996 228\n997 229\n998 230\n999 231\nLength: 1000, dtype: uint8, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters8]","uid":"c862ff068f63f055","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370425,"stop":1728332370426,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 222, 223, 224, 225, 226, 227, 228, 229, 230, 231],\n dtype='uint8', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters9]","uid":"4bf9faa042049dca","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370429,"stop":1728332370429,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters10]","uid":"8b7afdd900be2673","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370434,"stop":1728332370434,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=int16), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters11]","uid":"953b5f8e7acf94da","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370440,"stop":1728332370441,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int16, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters12]","uid":"4c02b04f408dd4f3","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370444,"stop":1728332370445,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int16', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters13]","uid":"bbd7bcdd41d5c7c3","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370448,"stop":1728332370448,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters14]","uid":"f8fead74c5c74acf","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370453,"stop":1728332370453,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint16), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters15]","uid":"da4a4a9d61c8deeb","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370459,"stop":1728332370459,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: uint16, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters16]","uid":"e36776bca7992a0b","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370463,"stop":1728332370463,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='uint16', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters17]","uid":"dcbad8270b74ab21","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370466,"stop":1728332370466,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters18]","uid":"18673d06a7d4fb52","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370471,"stop":1728332370472,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=int32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters19]","uid":"2d471f6d3cf67614","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370478,"stop":1728332370478,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int32, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters20]","uid":"5878210bba109ebd","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370481,"stop":1728332370482,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int32', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters21]","uid":"b5b192be12884d85","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370485,"stop":1728332370485,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters22]","uid":"d8e7713f8e16da6c","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370490,"stop":1728332370490,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters23]","uid":"11337a387d607956","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370496,"stop":1728332370496,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: uint32, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters24]","uid":"d7f35065e78010af","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370500,"stop":1728332370500,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='uint32', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters25]","uid":"9109263d4c4fa81","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370503,"stop":1728332370504,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters26]","uid":"1878543008e5985b","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370509,"stop":1728332370509,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999]), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters27]","uid":"2174088465b5ff9a","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370515,"stop":1728332370515,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: int64, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters28]","uid":"c932500f62c68b69","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370519,"stop":1728332370519,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='int64', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters29]","uid":"ae9e77fb171b2937","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370522,"stop":1728332370522,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters30]","uid":"587561a4e5dffcd6","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370527,"stop":1728332370528,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint64), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters31]","uid":"5f96348c960c0e5","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370534,"stop":1728332370534,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: uint64, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters32]","uid":"828326b1be79d582","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370538,"stop":1728332370538,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9,\n ...\n 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype='uint64', length=1000), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters33]","uid":"4ccd798afbeaa2b9","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370541,"stop":1728332370542,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters34]","uid":"a1da0f794accc40b","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370544,"stop":1728332370545,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([-128., -127., -126., ..., 997., 998., 999.], dtype=float32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': None}"],"tags":[]},{"name":"test_type_inference[parameters35]","uid":"a473dd2e02b04aea","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370549,"stop":1728332370549,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 -128.0\n1 -127.0\n2 -126.0\n3 -125.0\n4 -124.0\n ... \n1123 995.0\n1124 996.0\n1125 997.0\n1126 998.0\n1127 999.0\nLength: 1128, dtype: float32, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': None}"],"tags":[]},{"name":"test_type_inference[parameters36]","uid":"1927c466ef363616","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370553,"stop":1728332370554,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([-129.0, -128.0, -127.0, -126.0, -125.0, -124.0, -123.0, -122.0, -121.0,\n -120.0,\n ...\n 990.0, 991.0, 992.0, 993.0, 994.0, 995.0, 996.0, 997.0, 998.0,\n 999.0],\n dtype='float32', length=1129), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': None}"],"tags":[]},{"name":"test_type_inference[parameters37]","uid":"cb914e181a366b62","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370557,"stop":1728332370557,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ nan, -inf, -1., -0., 0., 0., 1., inf, nan],\n dtype=float32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': None}"],"tags":[]},{"name":"test_type_inference[parameters38]","uid":"7de7beb03b0e31f0","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370560,"stop":1728332370561,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([-3.4028235e+38, 0.0000000e+00, 3.4028235e+38], dtype=float32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': None}"],"tags":[]},{"name":"test_type_inference[parameters39]","uid":"87ff61ec2bcc0964","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370564,"stop":1728332370564,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': None}"],"tags":[]},{"name":"test_type_inference[parameters40]","uid":"61a93c4190cd6adb","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370567,"stop":1728332370568,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([-128., -127., -126., ..., 997., 998., 999.]), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': {'level': 30, 'output': 'may lose precision'}}"],"tags":[]},{"name":"test_type_inference[parameters41]","uid":"acc9178e1410460e","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370572,"stop":1728332370572,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 -128.0\n1 -127.0\n2 -126.0\n3 -125.0\n4 -124.0\n ... \n1123 995.0\n1124 996.0\n1125 997.0\n1126 998.0\n1127 999.0\nLength: 1128, dtype: float64, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': {'level': 30, 'output': 'may lose precision'}}"],"tags":[]},{"name":"test_type_inference[parameters42]","uid":"f6e6a80cef4a3454","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370576,"stop":1728332370577,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index([-129.0, -128.0, -127.0, -126.0, -125.0, -124.0, -123.0, -122.0, -121.0,\n -120.0,\n ...\n 990.0, 991.0, 992.0, 993.0, 994.0, 995.0, 996.0, 997.0, 998.0,\n 999.0],\n dtype='float64', length=1129), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': {'level': 30, 'output': 'may lose precision'}}"],"tags":[]},{"name":"test_type_inference[parameters43]","uid":"9c785a9d8dff51f6","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370581,"stop":1728332370581,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ nan, -inf, -1., -0., 0., 0., 1., inf, nan]), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': {'level': 30, 'output': 'may lose precision'}}"],"tags":[]},{"name":"test_type_inference[parameters44]","uid":"ee321279aaf89c98","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370585,"stop":1728332370585,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([-1.79769313e+308, 0.00000000e+000, 1.79769313e+308]), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': {'level': 30, 'output': 'may lose precision'}}"],"tags":[]},{"name":"test_type_inference[parameters45]","uid":"12e530afe1b6bd9a","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370589,"stop":1728332370589,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': {'level': 30, 'output': 'may lose precision'}}"],"tags":[]},{"name":"test_type_inference[parameters46]","uid":"bf6b612f4436182a","parentUid":"47691ca9566c50180f219303aa12ea3b","status":"passed","time":{"start":1728332370592,"stop":1728332370593,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([-9223372036854775808, 9223372036854775807]), 'throws': 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214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 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\ No newline at end of file diff --git a/22255/data/test-cases/b397d6b92ba27c9d.json b/22255/data/test-cases/b397d6b92ba27c9d.json new file mode 100644 index 000000000000..b218eeec2c1b --- /dev/null +++ b/22255/data/test-cases/b397d6b92ba27c9d.json @@ -0,0 +1 @@ +{"uid":"b397d6b92ba27c9d","name":"test__rollup[no_compare_dim_one_ancestor_cell_type_missing_in_one_tissue_but_exists_in_all_others-input_cell_counts_df1-expected_cell_counts_df1-input_gene_expr_df1-expected_gene_expr_df1]","fullName":"tests.unit.backend.wmg.api.common.test_rollup#test__rollup","historyId":"4f34d24473a3e97e04a717c5f4435ddc","time":{"start":1728332251944,"stop":1728332251964,"duration":20},"description":"\n Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\n values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\n grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ).\n\n The input:\n\n 1. A cell type ontology subgraph consisting of 4 cell types.\n\n CL:0000127\n ├── CL:0000644\n ├── CL:0002605\n └── CL:0002627\n\n 2. A gene expression dataframe consisting of expression numeric values for each\n (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\n This value is held in a column called `n_cells_tissue`.\n 6. A cell counts dataframe that consists of cell counts for each\n (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 7. We set the `n_cells_tissue` column values to 1000 for all rows\n in the gene expression dataframe.\n 8. We set all other numeric column values to `1` in the gene expression dataframe.\n\n The expected output:\n\n 1. A rolled up gene expression dataframe.\n 2. A rolled up cell counts dataframe.\n 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\n does not change for all rows because it should not be rolled up the cell type ontology\n ancestor paths.\n 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\n in the rolled up gene expression dataframe hold the correct rolled up values.\n 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\n rolled up values.\n ","descriptionHtml":"
Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\nvalues FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\ngrouped by (tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>).\n\nThe input:\n\n1. A cell type ontology subgraph consisting of 4 cell types.\n\nCL:0000127\n├── CL:0000644\n├── CL:0002605\n└── CL:0002627\n\n2. A gene expression dataframe consisting of expression numeric values for each\n(gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\nThis value is held in a column called `n_cells_tissue`.\n6. A cell counts dataframe that consists of cell counts for each\n(tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n7. We set the `n_cells_tissue` column values to 1000 for all rows\nin the gene expression dataframe.\n8. We set all other numeric column values to `1` in the gene expression dataframe.\n\nThe expected output:\n\n1. A rolled up gene expression dataframe.\n2. A rolled up cell counts dataframe.\n3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\ndoes not change for all rows because it should not be rolled up the cell type ontology\nancestor paths.\n4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\nin the rolled up gene expression dataframe hold the correct rolled up values.\n5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\nrolled up values.\n
\n","status":"passed","flaky":false,"newFailed":false,"newBroken":false,"newPassed":false,"retriesCount":0,"retriesStatusChange":false,"beforeStages":[{"name":"patch_all","time":{"start":1728332248994,"stop":1728332248994,"duration":0},"status":"passed","steps":[],"attachments":[],"parameters":[],"shouldDisplayMessage":false,"stepsCount":0,"attachmentsCount":0,"hasContent":false,"attachmentStep":false}],"testStage":{"description":"\n Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\n values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\n grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ).\n\n The input:\n\n 1. A cell type ontology subgraph consisting of 4 cell types.\n\n CL:0000127\n ├── CL:0000644\n ├── CL:0002605\n └── CL:0002627\n\n 2. A gene expression dataframe consisting of expression numeric values for each\n (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\n This value is held in a column called `n_cells_tissue`.\n 6. A cell counts dataframe that consists of cell counts for each\n (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 7. We set the `n_cells_tissue` column values to 1000 for all rows\n in the gene expression dataframe.\n 8. We set all other numeric column values to `1` in the gene expression dataframe.\n\n The expected output:\n\n 1. A rolled up gene expression dataframe.\n 2. A rolled up cell counts dataframe.\n 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\n does not change for all rows because it should not be rolled up the cell type ontology\n ancestor paths.\n 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\n in the rolled up gene expression dataframe hold the correct rolled up values.\n 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\n rolled up values.\n ","status":"passed","steps":[],"attachments":[{"uid":"8ef042348f13b7dd","name":"log","source":"8ef042348f13b7dd.txt","type":"text/plain","size":230},{"uid":"adc5afbe4dd2f8e3","name":"stderr","source":"adc5afbe4dd2f8e3.txt","type":"text/plain","size":704}],"parameters":[],"shouldDisplayMessage":false,"stepsCount":0,"attachmentsCount":2,"hasContent":true,"attachmentStep":false},"afterStages":[],"labels":[{"name":"parentSuite","value":"tests.unit.backend.wmg.api.common"},{"name":"suite","value":"test_rollup"},{"name":"host","value":"c8944bfb0da1"},{"name":"thread","value":"1-MainThread"},{"name":"framework","value":"pytest"},{"name":"language","value":"cpython3"},{"name":"package","value":"tests.unit.backend.wmg.api.common.test_rollup"},{"name":"resultFormat","value":"allure2"}],"parameters":[{"name":"expected_cell_counts_df","value":" n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id \nUBERON:0000955 CL:0000127 240\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90\nUBERON:0002113 CL:0000127 540\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90"},{"name":"expected_gene_expr_df","value":" gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000169429 ... 1000\n2 ENSG00000085265 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000169429 ... 1000\n5 ENSG00000085265 ... 1000\n6 ENSG00000169429 ... 1000\n7 ENSG00000085265 ... 1000\n8 ENSG00000085265 ... 1000\n9 ENSG00000169429 ... 1000\n\n[10 rows x 7 columns]"},{"name":"input_cell_counts_df","value":" n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id \nUBERON:0000955 CL:0000644 70\n CL:0002605 80\n CL:0002627 90\nUBERON:0002113 CL:0000127 300\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90"},{"name":"input_gene_expr_df","value":" gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000085265 ... 1000\n2 ENSG00000169429 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000085265 ... 1000\n5 ENSG00000169429 ... 1000\n\n[6 rows x 7 columns]"},{"name":"name","value":"'no_compare_dim_one_ancestor_cell_type_missing_in_one_tissue_but_exists_in_all_others'"}],"links":[],"hidden":false,"retry":false,"extra":{"severity":"normal","retries":[],"categories":[],"history":{"statistic":{"failed":0,"broken":0,"skipped":0,"passed":258,"unknown":0,"total":258},"items":[{"uid":"48859c88e4c4be1c","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22254//#testresult/48859c88e4c4be1c","status":"passed","time":{"start":1728329127201,"stop":1728329127223,"duration":22}},{"uid":"92e30e011b4b48db","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22253//#testresult/92e30e011b4b48db","status":"passed","time":{"start":1728328501472,"stop":1728328501491,"duration":19}},{"uid":"8be293269f8fc413","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22245//#testresult/8be293269f8fc413","status":"passed","time":{"start":1728326853954,"stop":1728326853974,"duration":20}},{"uid":"dfcc747dc3b0b3a7","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22244//#testresult/dfcc747dc3b0b3a7","status":"passed","time":{"start":1728326195969,"stop":1728326195988,"duration":19}},{"uid":"df95641ea7a6c75c","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22243//#testresult/df95641ea7a6c75c","status":"passed","time":{"start":1728325072784,"stop":1728325072806,"duration":22}},{"uid":"eeb7762a10211e14","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22241//#testresult/eeb7762a10211e14","status":"passed","time":{"start":1728322485659,"stop":1728322485682,"duration":23}},{"uid":"316f6c92708a4f13","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22234//#testresult/316f6c92708a4f13","status":"passed","time":{"start":1728321633993,"stop":1728321634012,"duration":19}},{"uid":"cfe09194b6ad94bf","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22231//#testresult/cfe09194b6ad94bf","status":"passed","time":{"start":1728320378117,"stop":1728320378136,"duration":19}},{"uid":"20761753d8f979ab","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22226//#testresult/20761753d8f979ab","status":"passed","time":{"start":1728070928740,"stop":1728070928760,"duration":20}},{"uid":"a25e95b26da1bbeb","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22221//#testresult/a25e95b26da1bbeb","status":"passed","time":{"start":1728070131696,"stop":1728070131720,"duration":24}},{"uid":"e9d4f1021e670e2c","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22222//#testresult/e9d4f1021e670e2c","status":"passed","time":{"start":1728070141105,"stop":1728070141135,"duration":30}},{"uid":"98996eb5bf4711fd","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22220//#testresult/98996eb5bf4711fd","status":"passed","time":{"start":1728069467673,"stop":1728069467692,"duration":19}},{"uid":"5bb5c14d1f6e084a","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22212//#testresult/5bb5c14d1f6e084a","status":"passed","time":{"start":1728061923996,"stop":1728061924016,"duration":20}},{"uid":"9d84a5124fa9e5e5","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22211//#testresult/9d84a5124fa9e5e5","status":"passed","time":{"start":1728057018947,"stop":1728057018967,"duration":20}},{"uid":"2295df0d2b03beeb","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22210//#testresult/2295df0d2b03beeb","status":"passed","time":{"start":1728056602292,"stop":1728056602311,"duration":19}},{"uid":"de6f790734ecdbb8","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22198//#testresult/de6f790734ecdbb8","status":"passed","time":{"start":1727977854575,"stop":1727977854595,"duration":20}},{"uid":"bb0291e099e6506b","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22197//#testresult/bb0291e099e6506b","status":"passed","time":{"start":1727975545649,"stop":1727975545669,"duration":20}},{"uid":"5d634ae0a8c5034f","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22196//#testresult/5d634ae0a8c5034f","status":"passed","time":{"start":1727975478800,"stop":1727975478820,"duration":20}},{"uid":"6224de69cb8457dd","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22182//#testresult/6224de69cb8457dd","status":"passed","time":{"start":1727969551281,"stop":1727969551302,"duration":21}},{"uid":"fc682e7686be8660","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22178//#testresult/fc682e7686be8660","status":"passed","time":{"start":1727969457861,"stop":1727969457880,"duration":19}}]},"tags":[]},"source":"b397d6b92ba27c9d.json","parameterValues":[" n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id \nUBERON:0000955 CL:0000127 240\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90\nUBERON:0002113 CL:0000127 540\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90"," gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000169429 ... 1000\n2 ENSG00000085265 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000169429 ... 1000\n5 ENSG00000085265 ... 1000\n6 ENSG00000169429 ... 1000\n7 ENSG00000085265 ... 1000\n8 ENSG00000085265 ... 1000\n9 ENSG00000169429 ... 1000\n\n[10 rows x 7 columns]"," n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id \nUBERON:0000955 CL:0000644 70\n CL:0002605 80\n CL:0002627 90\nUBERON:0002113 CL:0000127 300\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90"," gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000085265 ... 1000\n2 ENSG00000169429 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000085265 ... 1000\n5 ENSG00000169429 ... 1000\n\n[6 rows x 7 columns]","'no_compare_dim_one_ancestor_cell_type_missing_in_one_tissue_but_exists_in_all_others'"]} \ No newline at end of file diff --git a/22255/data/test-cases/b43de58bdd324f1b.json b/22255/data/test-cases/b43de58bdd324f1b.json new file mode 100644 index 000000000000..ab446336ede3 --- /dev/null +++ b/22255/data/test-cases/b43de58bdd324f1b.json @@ -0,0 +1 @@ +{"uid":"b43de58bdd324f1b","name":"test__rollup[no_compare_dim_all_tissues_have_all_cell_types-input_cell_counts_df0-expected_cell_counts_df0-input_gene_expr_df0-expected_gene_expr_df0]","fullName":"tests.unit.backend.wmg.api.common.test_rollup#test__rollup","historyId":"f8f8ae804e63395ddf252e5ce0694c9b","time":{"start":1728332251861,"stop":1728332251902,"duration":41},"description":"\n Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\n values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\n grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ).\n\n The input:\n\n 1. A cell type ontology subgraph consisting of 4 cell types.\n\n CL:0000127\n ├── CL:0000644\n ├── CL:0002605\n └── CL:0002627\n\n 2. A gene expression dataframe consisting of expression numeric values for each\n (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\n This value is held in a column called `n_cells_tissue`.\n 6. A cell counts dataframe that consists of cell counts for each\n (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 7. We set the `n_cells_tissue` column values to 1000 for all rows\n in the gene expression dataframe.\n 8. We set all other numeric column values to `1` in the gene expression dataframe.\n\n The expected output:\n\n 1. A rolled up gene expression dataframe.\n 2. A rolled up cell counts dataframe.\n 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\n does not change for all rows because it should not be rolled up the cell type ontology\n ancestor paths.\n 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\n in the rolled up gene expression dataframe hold the correct rolled up values.\n 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\n rolled up values.\n ","descriptionHtml":"
Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\nvalues FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\ngrouped by (tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>).\n\nThe input:\n\n1. A cell type ontology subgraph consisting of 4 cell types.\n\nCL:0000127\n├── CL:0000644\n├── CL:0002605\n└── CL:0002627\n\n2. A gene expression dataframe consisting of expression numeric values for each\n(gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\nThis value is held in a column called `n_cells_tissue`.\n6. A cell counts dataframe that consists of cell counts for each\n(tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n7. We set the `n_cells_tissue` column values to 1000 for all rows\nin the gene expression dataframe.\n8. We set all other numeric column values to `1` in the gene expression dataframe.\n\nThe expected output:\n\n1. A rolled up gene expression dataframe.\n2. A rolled up cell counts dataframe.\n3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\ndoes not change for all rows because it should not be rolled up the cell type ontology\nancestor paths.\n4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\nin the rolled up gene expression dataframe hold the correct rolled up values.\n5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\nrolled up values.\n
\n","status":"passed","flaky":false,"newFailed":false,"newBroken":false,"newPassed":false,"retriesCount":0,"retriesStatusChange":false,"beforeStages":[{"name":"patch_all","time":{"start":1728332248994,"stop":1728332248994,"duration":0},"status":"passed","steps":[],"attachments":[],"parameters":[],"shouldDisplayMessage":false,"stepsCount":0,"attachmentsCount":0,"hasContent":false,"attachmentStep":false}],"afterStages":[],"labels":[{"name":"parentSuite","value":"tests.unit.backend.wmg.api.common"},{"name":"suite","value":"test_rollup"},{"name":"host","value":"c8944bfb0da1"},{"name":"thread","value":"1-MainThread"},{"name":"framework","value":"pytest"},{"name":"language","value":"cpython3"},{"name":"package","value":"tests.unit.backend.wmg.api.common.test_rollup"},{"name":"resultFormat","value":"allure2"}],"parameters":[{"name":"expected_cell_counts_df","value":" n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id \nUBERON:0000955 CL:0000127 540\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90\nUBERON:0002113 CL:0000127 540\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90"},{"name":"expected_gene_expr_df","value":" gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000169429 ... 1000\n2 ENSG00000085265 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000169429 ... 1000\n5 ENSG00000085265 ... 1000\n6 ENSG00000169429 ... 1000\n7 ENSG00000085265 ... 1000\n8 ENSG00000085265 ... 1000\n9 ENSG00000169429 ... 1000\n\n[10 rows x 7 columns]"},{"name":"input_cell_counts_df","value":" n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id \nUBERON:0000955 CL:0000127 300\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90\nUBERON:0002113 CL:0000127 300\n CL:0000644 70\n CL:0002605 80\n CL:0002627 90"},{"name":"input_gene_expr_df","value":" gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000085265 ... 1000\n2 ENSG00000169429 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000085265 ... 1000\n5 ENSG00000169429 ... 1000\n\n[6 rows x 7 columns]"},{"name":"name","value":"'no_compare_dim_all_tissues_have_all_cell_types'"}],"links":[],"hidden":false,"retry":false,"extra":{"severity":"normal","retries":[],"categories":[],"history":{"statistic":{"failed":0,"broken":0,"skipped":0,"passed":258,"unknown":0,"total":258},"items":[{"uid":"c61f9eddfc115aab","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22254//#testresult/c61f9eddfc115aab","status":"passed","time":{"start":1728329127119,"stop":1728329127158,"duration":39}},{"uid":"ba4427221e4f3b8c","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22253//#testresult/ba4427221e4f3b8c","status":"passed","time":{"start":1728328501393,"stop":1728328501431,"duration":38}},{"uid":"d3d05cd2001de6c2","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22245//#testresult/d3d05cd2001de6c2","status":"passed","time":{"start":1728326853868,"stop":1728326853909,"duration":41}},{"uid":"cfe0a99e91f37eb6","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22244//#testresult/cfe0a99e91f37eb6","status":"passed","time":{"start":1728326195891,"stop":1728326195929,"duration":38}},{"uid":"af5b2b798a4f863c","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22243//#testresult/af5b2b798a4f863c","status":"passed","time":{"start":1728325072664,"stop":1728325072728,"duration":64}},{"uid":"e78e70711b440979","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22241//#testresult/e78e70711b440979","status":"passed","time":{"start":1728322485577,"stop":1728322485617,"duration":40}},{"uid":"6282b51bb6eefc5e","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22234//#testresult/6282b51bb6eefc5e","status":"passed","time":{"start":1728321633911,"stop":1728321633951,"duration":40}},{"uid":"e02445109cf49f70","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22231//#testresult/e02445109cf49f70","status":"passed","time":{"start":1728320378036,"stop":1728320378076,"duration":40}},{"uid":"9a68319f83511d4f","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22226//#testresult/9a68319f83511d4f","status":"passed","time":{"start":1728070928660,"stop":1728070928698,"duration":38}},{"uid":"ae0c7a98e22646b2","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22221//#testresult/ae0c7a98e22646b2","status":"passed","time":{"start":1728070131600,"stop":1728070131649,"duration":49}},{"uid":"589d135c4672d468","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22222//#testresult/589d135c4672d468","status":"passed","time":{"start":1728070140989,"stop":1728070141041,"duration":52}},{"uid":"85685658e436b59c","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22220//#testresult/85685658e436b59c","status":"passed","time":{"start":1728069467594,"stop":1728069467633,"duration":39}},{"uid":"ef3440e0b48c7d6e","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22212//#testresult/ef3440e0b48c7d6e","status":"passed","time":{"start":1728061923916,"stop":1728061923955,"duration":39}},{"uid":"19b8f97080399146","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22211//#testresult/19b8f97080399146","status":"passed","time":{"start":1728057018866,"stop":1728057018905,"duration":39}},{"uid":"f8dbc1d7be93ad77","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22210//#testresult/f8dbc1d7be93ad77","status":"passed","time":{"start":1728056602213,"stop":1728056602251,"duration":38}},{"uid":"861dae5d4d357429","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22198//#testresult/861dae5d4d357429","status":"passed","time":{"start":1727977854487,"stop":1727977854530,"duration":43}},{"uid":"8d548dad3663138e","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22197//#testresult/8d548dad3663138e","status":"passed","time":{"start":1727975545567,"stop":1727975545607,"duration":40}},{"uid":"c598cfefa2e04005","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22196//#testresult/c598cfefa2e04005","status":"passed","time":{"start":1727975478717,"stop":1727975478757,"duration":40}},{"uid":"2d2de1f80625e6f5","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22182//#testresult/2d2de1f80625e6f5","status":"passed","time":{"start":1727969551196,"stop":1727969551238,"duration":42}},{"uid":"6764a3b539ab277c","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22178//#testresult/6764a3b539ab277c","status":"passed","time":{"start":1727969457781,"stop":1727969457820,"duration":39}}]},"tags":[]},"source":"b43de58bdd324f1b.json","parameterValues":[" 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array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 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\ No newline at end of file diff --git a/22255/data/test-cases/dbb04e29f9c2472a.json b/22255/data/test-cases/dbb04e29f9c2472a.json new file mode 100644 index 000000000000..356d831003cf --- /dev/null +++ b/22255/data/test-cases/dbb04e29f9c2472a.json @@ -0,0 +1 @@ +{"uid":"dbb04e29f9c2472a","name":"test__rollup[no_compare_dim_all_tissues_have_all_cell_types_except_root_cell_type-input_cell_counts_df5-expected_cell_counts_df5-input_gene_expr_df5-expected_gene_expr_df5]","fullName":"tests.unit.backend.wmg.api.common.test_rollup#test__rollup","historyId":"5e7c3babaa5f3f4466cb1a158c93146e","time":{"start":1728332252194,"stop":1728332252213,"duration":19},"description":"\n Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\n values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\n grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ).\n\n The input:\n\n 1. A cell type ontology subgraph consisting of 4 cell types.\n\n CL:0000127\n ├── CL:0000644\n ├── CL:0002605\n └── CL:0002627\n\n 2. A gene expression dataframe consisting of expression numeric values for each\n (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\n This value is held in a column called `n_cells_tissue`.\n 6. A cell counts dataframe that consists of cell counts for each\n (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 7. We set the `n_cells_tissue` column values to 1000 for all rows\n in the gene expression dataframe.\n 8. We set all other numeric column values to `1` in the gene expression dataframe.\n\n The expected output:\n\n 1. A rolled up gene expression dataframe.\n 2. A rolled up cell counts dataframe.\n 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\n does not change for all rows because it should not be rolled up the cell type ontology\n ancestor paths.\n 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\n in the rolled up gene expression dataframe hold the correct rolled up values.\n 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\n rolled up values.\n ","descriptionHtml":"
Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\nvalues FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\ngrouped by (tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>).\n\nThe input:\n\n1. A cell type ontology subgraph consisting of 4 cell types.\n\nCL:0000127\n├── CL:0000644\n├── CL:0002605\n└── CL:0002627\n\n2. A gene expression dataframe consisting of expression numeric values for each\n(gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\nThis value is held in a column called `n_cells_tissue`.\n6. A cell counts dataframe that consists of cell counts for each\n(tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n7. We set the `n_cells_tissue` column values to 1000 for all rows\nin the gene expression dataframe.\n8. We set all other numeric column values to `1` in the gene expression dataframe.\n\nThe expected output:\n\n1. A rolled up gene expression dataframe.\n2. A rolled up cell counts dataframe.\n3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\ndoes not change for all rows because it should not be rolled up the cell type ontology\nancestor paths.\n4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\nin the rolled up gene expression dataframe hold the correct rolled up values.\n5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\nrolled up values.\n
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\ No newline at end of file diff --git a/22255/data/test-cases/de2d5a20fcd13612.json b/22255/data/test-cases/de2d5a20fcd13612.json new file mode 100644 index 000000000000..62d50f703a3a --- /dev/null +++ b/22255/data/test-cases/de2d5a20fcd13612.json @@ -0,0 +1 @@ +{"uid":"de2d5a20fcd13612","name":"test__rollup[no_compare_dim_gene_expressed_in_one_tissue_but_not_other-input_cell_counts_df2-expected_cell_counts_df2-input_gene_expr_df2-expected_gene_expr_df2]","fullName":"tests.unit.backend.wmg.api.common.test_rollup#test__rollup","historyId":"8829462a338d361e56853010e16ef7d1","time":{"start":1728332252005,"stop":1728332252025,"duration":20},"description":"\n Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\n values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\n grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ).\n\n The input:\n\n 1. A cell type ontology subgraph consisting of 4 cell types.\n\n CL:0000127\n ├── CL:0000644\n ├── CL:0002605\n └── CL:0002627\n\n 2. A gene expression dataframe consisting of expression numeric values for each\n (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\n This value is held in a column called `n_cells_tissue`.\n 6. A cell counts dataframe that consists of cell counts for each\n (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 7. We set the `n_cells_tissue` column values to 1000 for all rows\n in the gene expression dataframe.\n 8. We set all other numeric column values to `1` in the gene expression dataframe.\n\n The expected output:\n\n 1. A rolled up gene expression dataframe.\n 2. A rolled up cell counts dataframe.\n 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\n does not change for all rows because it should not be rolled up the cell type ontology\n ancestor paths.\n 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\n in the rolled up gene expression dataframe hold the correct rolled up values.\n 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\n rolled up values.\n ","descriptionHtml":"
Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\nvalues FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\ngrouped by (tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>).\n\nThe input:\n\n1. A cell type ontology subgraph consisting of 4 cell types.\n\nCL:0000127\n├── CL:0000644\n├── CL:0002605\n└── CL:0002627\n\n2. A gene expression dataframe consisting of expression numeric values for each\n(gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\nThis value is held in a column called `n_cells_tissue`.\n6. A cell counts dataframe that consists of cell counts for each\n(tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n7. We set the `n_cells_tissue` column values to 1000 for all rows\nin the gene expression dataframe.\n8. We set all other numeric column values to `1` in the gene expression dataframe.\n\nThe expected output:\n\n1. A rolled up gene expression dataframe.\n2. A rolled up cell counts dataframe.\n3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\ndoes not change for all rows because it should not be rolled up the cell type ontology\nancestor paths.\n4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\nin the rolled up gene expression dataframe hold the correct rolled up values.\n5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\nrolled up values.\n
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A cell type ontology subgraph consisting of 4 cell types.\n\n CL:0000127\n ├── CL:0000644\n ├── CL:0002605\n └── CL:0002627\n\n 2. A gene expression dataframe consisting of expression numeric values for each\n (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\n This value is held in a column called `n_cells_tissue`.\n 6. A cell counts dataframe that consists of cell counts for each\n (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 7. We set the `n_cells_tissue` column values to 1000 for all rows\n in the gene expression dataframe.\n 8. We set all other numeric column values to `1` in the gene expression dataframe.\n\n The expected output:\n\n 1. A rolled up gene expression dataframe.\n 2. A rolled up cell counts dataframe.\n 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\n does not change for all rows because it should not be rolled up the cell type ontology\n ancestor paths.\n 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\n in the rolled up gene expression dataframe hold the correct rolled up values.\n 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\n rolled up values.\n ","descriptionHtml":"
Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\nvalues FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\ngrouped by (tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>).\n\nThe input:\n\n1. A cell type ontology subgraph consisting of 4 cell types.\n\nCL:0000127\n├── CL:0000644\n├── CL:0002605\n└── CL:0002627\n\n2. A gene expression dataframe consisting of expression numeric values for each\n(gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\nThis value is held in a column called `n_cells_tissue`.\n6. A cell counts dataframe that consists of cell counts for each\n(tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n7. We set the `n_cells_tissue` column values to 1000 for all rows\nin the gene expression dataframe.\n8. We set all other numeric column values to `1` in the gene expression dataframe.\n\nThe expected output:\n\n1. A rolled up gene expression dataframe.\n2. A rolled up cell counts dataframe.\n3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\ndoes not change for all rows because it should not be rolled up the cell type ontology\nancestor paths.\n4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\nin the rolled up gene expression dataframe hold the correct rolled up values.\n5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\nrolled up values.\n
\n","status":"passed","flaky":false,"newFailed":false,"newBroken":false,"newPassed":false,"retriesCount":0,"retriesStatusChange":false,"beforeStages":[{"name":"patch_all","time":{"start":1728332248994,"stop":1728332248994,"duration":0},"status":"passed","steps":[],"attachments":[],"parameters":[],"shouldDisplayMessage":false,"stepsCount":0,"attachmentsCount":0,"hasContent":false,"attachmentStep":false}],"afterStages":[],"labels":[{"name":"parentSuite","value":"tests.unit.backend.wmg.api.common"},{"name":"suite","value":"test_rollup"},{"name":"host","value":"c8944bfb0da1"},{"name":"thread","value":"1-MainThread"},{"name":"framework","value":"pytest"},{"name":"language","value":"cpython3"},{"name":"package","value":"tests.unit.backend.wmg.api.common.test_rollup"},{"name":"resultFormat","value":"allure2"}],"parameters":[{"name":"expected_cell_counts_df","value":" n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id self_reported_ethnicity_ontology_term_id \nUBERON:0000955 CL:0000127 HANCESTRO:0008 50\n multiethnic 70\n unknown 410\n CL:0000644 unknown 70\n CL:0002605 HANCESTRO:0005 10\n HANCESTRO:0008 30\n multiethnic 40\n CL:0002627 HANCESTRO:0006 10\n HANCESTRO:0008 20\n multiethnic 30\n unknown 40"},{"name":"expected_gene_expr_df","value":" gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000085265 ... 1000\n2 ENSG00000169429 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000085265 ... 1000\n5 ENSG00000085265 ... 1000\n6 ENSG00000085265 ... 1000\n7 ENSG00000085265 ... 1000\n8 ENSG00000169429 ... 1000\n\n[9 rows x 8 columns]"},{"name":"input_cell_counts_df","value":" n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id self_reported_ethnicity_ontology_term_id \nUBERON:0000955 CL:0000127 unknown 300\n CL:0000644 unknown 70\n CL:0002605 HANCESTRO:0005 10\n HANCESTRO:0008 30\n multiethnic 40\n CL:0002627 HANCESTRO:0006 10\n HANCESTRO:0008 20\n multiethnic 30\n unknown 40"},{"name":"input_gene_expr_df","value":" gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000085265 ... 1000\n2 ENSG00000085265 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000169429 ... 1000\n\n[5 rows x 8 columns]"},{"name":"name","value":"'with_ethnicity_compare_dim_on_single_tissue'"}],"links":[],"hidden":false,"retry":false,"extra":{"severity":"normal","retries":[],"categories":[],"history":{"statistic":{"failed":0,"broken":0,"skipped":0,"passed":258,"unknown":0,"total":258},"items":[{"uid":"203fd5d981716459","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22254//#testresult/203fd5d981716459","status":"passed","time":{"start":1728329127389,"stop":1728329127411,"duration":22}},{"uid":"76ed71cc520bbfe8","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22253//#testresult/76ed71cc520bbfe8","status":"passed","time":{"start":1728328501651,"stop":1728328501674,"duration":23}},{"uid":"c40317ddff2005cf","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22245//#testresult/c40317ddff2005cf","status":"passed","time":{"start":1728326854138,"stop":1728326854161,"duration":23}},{"uid":"82914e88b15f222f","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22244//#testresult/82914e88b15f222f","status":"passed","time":{"start":1728326196151,"stop":1728326196174,"duration":23}},{"uid":"fa62eab519395968","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22243//#testresult/fa62eab519395968","status":"passed","time":{"start":1728325073064,"stop":1728325073093,"duration":29}},{"uid":"6a2d2199de1f2dbe","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22241//#testresult/6a2d2199de1f2dbe","status":"passed","time":{"start":1728322485849,"stop":1728322485872,"duration":23}},{"uid":"85ebb3a9e534f662","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22234//#testresult/85ebb3a9e534f662","status":"passed","time":{"start":1728321634179,"stop":1728321634201,"duration":22}},{"uid":"15fcf92bdc1da1af","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22231//#testresult/15fcf92bdc1da1af","status":"passed","time":{"start":1728320378297,"stop":1728320378318,"duration":21}},{"uid":"5b3c3eeaa38fcd8b","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22226//#testresult/5b3c3eeaa38fcd8b","status":"passed","time":{"start":1728070928925,"stop":1728070928947,"duration":22}},{"uid":"c3facbaa0b4d3dbc","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22221//#testresult/c3facbaa0b4d3dbc","status":"passed","time":{"start":1728070131960,"stop":1728070131988,"duration":28}},{"uid":"a40221015a47fa9d","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22222//#testresult/a40221015a47fa9d","status":"passed","time":{"start":1728070141389,"stop":1728070141423,"duration":34}},{"uid":"7fae568a3453f3d0","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22220//#testresult/7fae568a3453f3d0","status":"passed","time":{"start":1728069467851,"stop":1728069467873,"duration":22}},{"uid":"d7192e3b1066c158","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22212//#testresult/d7192e3b1066c158","status":"passed","time":{"start":1728061924178,"stop":1728061924200,"duration":22}},{"uid":"7f52703807e1d9ee","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22211//#testresult/7f52703807e1d9ee","status":"passed","time":{"start":1728057019139,"stop":1728057019162,"duration":23}},{"uid":"9dad3d25215e1947","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22210//#testresult/9dad3d25215e1947","status":"passed","time":{"start":1728056602473,"stop":1728056602495,"duration":22}},{"uid":"796350f54b61511c","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22198//#testresult/796350f54b61511c","status":"passed","time":{"start":1727977854759,"stop":1727977854781,"duration":22}},{"uid":"a2a2cbc87651a2a9","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22197//#testresult/a2a2cbc87651a2a9","status":"passed","time":{"start":1727975545835,"stop":1727975545858,"duration":23}},{"uid":"92feab5c8a88f264","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22196//#testresult/92feab5c8a88f264","status":"passed","time":{"start":1727975478982,"stop":1727975479004,"duration":22}},{"uid":"8e58c4600768f2dc","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22182//#testresult/8e58c4600768f2dc","status":"passed","time":{"start":1727969551473,"stop":1727969551496,"duration":23}},{"uid":"ffa83cc7224d25a4","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22178//#testresult/ffa83cc7224d25a4","status":"passed","time":{"start":1727969458043,"stop":1727969458064,"duration":21}}]},"tags":[]},"source":"efd363c5e53a21bc.json","parameterValues":[" n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id self_reported_ethnicity_ontology_term_id \nUBERON:0000955 CL:0000127 HANCESTRO:0008 50\n multiethnic 70\n unknown 410\n CL:0000644 unknown 70\n CL:0002605 HANCESTRO:0005 10\n HANCESTRO:0008 30\n multiethnic 40\n CL:0002627 HANCESTRO:0006 10\n HANCESTRO:0008 20\n multiethnic 30\n unknown 40"," gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000085265 ... 1000\n2 ENSG00000169429 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000085265 ... 1000\n5 ENSG00000085265 ... 1000\n6 ENSG00000085265 ... 1000\n7 ENSG00000085265 ... 1000\n8 ENSG00000169429 ... 1000\n\n[9 rows x 8 columns]"," n_cells_cell_type\ntissue_ontology_term_id cell_type_ontology_term_id self_reported_ethnicity_ontology_term_id \nUBERON:0000955 CL:0000127 unknown 300\n CL:0000644 unknown 70\n CL:0002605 HANCESTRO:0005 10\n HANCESTRO:0008 30\n multiethnic 40\n CL:0002627 HANCESTRO:0006 10\n HANCESTRO:0008 20\n multiethnic 30\n unknown 40"," gene_ontology_term_id ... n_cells_tissue\n0 ENSG00000085265 ... 1000\n1 ENSG00000085265 ... 1000\n2 ENSG00000085265 ... 1000\n3 ENSG00000085265 ... 1000\n4 ENSG00000169429 ... 1000\n\n[5 rows x 8 columns]","'with_ethnicity_compare_dim_on_single_tissue'"]} \ No newline at end of file diff --git a/22255/data/test-cases/f0a08294831ec29d.json b/22255/data/test-cases/f0a08294831ec29d.json new file mode 100644 index 000000000000..2e5eee7ba908 --- /dev/null +++ b/22255/data/test-cases/f0a08294831ec29d.json @@ -0,0 +1 @@ +{"uid":"f0a08294831ec29d","name":"test__sizeof_formatted__converts_to_gb","fullName":"tests.unit.backend.layers.utils.test_math_utils.TestMathUtils#test__sizeof_formatted__converts_to_gb","historyId":"062a27ef122cfca31510a97b8a78fc5f","time":{"start":1728332254457,"stop":1728332254457,"duration":0},"status":"passed","flaky":false,"newFailed":false,"newBroken":false,"newPassed":false,"retriesCount":0,"retriesStatusChange":false,"beforeStages":[{"name":"patch_all","time":{"start":1728332240872,"stop":1728332240872,"duration":0},"status":"passed","steps":[],"attachments":[],"parameters":[],"shouldDisplayMessage":false,"stepsCount":0,"attachmentsCount":0,"hasContent":false,"attachmentStep":false},{"name":"_unittest_setUpClass_fixture_TestMathUtils","time":{"start":1728332254456,"stop":1728332254456,"duration":0},"status":"passed","steps":[],"attachments":[],"parameters":[],"shouldDisplayMessage":false,"stepsCount":0,"attachmentsCount":0,"hasContent":false,"attachmentStep":false}],"afterStages":[{"name":"_unittest_setUpClass_fixture_TestMathUtils::0","time":{"start":1728332254457,"stop":1728332254457,"duration":0},"status":"passed","steps":[],"attachments":[],"parameters":[],"shouldDisplayMessage":false,"stepsCount":0,"attachmentsCount":0,"hasContent":false,"attachmentStep":false}],"labels":[{"name":"parentSuite","value":"tests.unit.backend.layers.utils"},{"name":"suite","value":"test_math_utils"},{"name":"subSuite","value":"TestMathUtils"},{"name":"host","value":"b8a599200d56"},{"name":"thread","value":"1-MainThread"},{"name":"framework","value":"pytest"},{"name":"language","value":"cpython3"},{"name":"package","value":"tests.unit.backend.layers.utils.test_math_utils"},{"name":"resultFormat","value":"allure2"}],"parameters":[],"links":[],"hidden":false,"retry":false,"extra":{"severity":"normal","retries":[],"categories":[],"history":{"statistic":{"failed":0,"broken":0,"skipped":0,"passed":258,"unknown":0,"total":258},"items":[{"uid":"e03130b7cc17b22e","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22254//#testresult/e03130b7cc17b22e","status":"passed","time":{"start":1728329134942,"stop":1728329134942,"duration":0}},{"uid":"10ed3e304b121728","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22253//#testresult/10ed3e304b121728","status":"passed","time":{"start":1728328514176,"stop":1728328514176,"duration":0}},{"uid":"15bf38b55232f55b","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22245//#testresult/15bf38b55232f55b","status":"passed","time":{"start":1728326866199,"stop":1728326866199,"duration":0}},{"uid":"61cd5a4ef874c3aa","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22244//#testresult/61cd5a4ef874c3aa","status":"passed","time":{"start":1728326208578,"stop":1728326208579,"duration":1}},{"uid":"f2fcca1a9f9196eb","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22243//#testresult/f2fcca1a9f9196eb","status":"passed","time":{"start":1728325084498,"stop":1728325084498,"duration":0}},{"uid":"26798959063b921e","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22241//#testresult/26798959063b921e","status":"passed","time":{"start":1728322499575,"stop":1728322499575,"duration":0}},{"uid":"9c1ea6e5d799cead","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22234//#testresult/9c1ea6e5d799cead","status":"passed","time":{"start":1728321644728,"stop":1728321644728,"duration":0}},{"uid":"f47f36ed24ba2985","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22231//#testresult/f47f36ed24ba2985","status":"passed","time":{"start":1728320356049,"stop":1728320356049,"duration":0}},{"uid":"5d6e817c46300d35","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22226//#testresult/5d6e817c46300d35","status":"passed","time":{"start":1728070927475,"stop":1728070927476,"duration":1}},{"uid":"5d9b96367335c2de","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22221//#testresult/5d9b96367335c2de","status":"passed","time":{"start":1728070164596,"stop":1728070164596,"duration":0}},{"uid":"70fbde5f51be3a78","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22222//#testresult/70fbde5f51be3a78","status":"passed","time":{"start":1728070148509,"stop":1728070148510,"duration":1}},{"uid":"664c28473b80a596","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22220//#testresult/664c28473b80a596","status":"passed","time":{"start":1728069478651,"stop":1728069478651,"duration":0}},{"uid":"42879407d79f100e","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22212//#testresult/42879407d79f100e","status":"passed","time":{"start":1728061952158,"stop":1728061952159,"duration":1}},{"uid":"2a10fd6cdd87ae0e","reportUrl":"https://chanzuckerberg.github.io/single-cell-data-portal/22211//#testresult/2a10fd6cdd87ae0e","status":"passed","time":{"start":1728057047214,"stop":1728057047215,"duration":1}},{"uid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array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 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796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint16), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"]} \ No newline at end of file diff --git a/22255/data/test-cases/f991f00a33652de8.json b/22255/data/test-cases/f991f00a33652de8.json new file mode 100644 index 000000000000..76e2e17da1c8 --- /dev/null +++ b/22255/data/test-cases/f991f00a33652de8.json @@ -0,0 +1 @@ +{"uid":"f991f00a33652de8","name":"test__rollup[no_compare_dim_one_of_the_tissues_has_no_gene_expressions_at_all-input_cell_counts_df3-expected_cell_counts_df3-input_gene_expr_df3-expected_gene_expr_df3]","fullName":"tests.unit.backend.wmg.api.common.test_rollup#test__rollup","historyId":"31b9ca75c80d7f71de070fae47c3e8e4","time":{"start":1728332252065,"stop":1728332252084,"duration":19},"description":"\n Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\n values FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\n grouped by (tissue_ontology_term_id, cell_type_ontology_term_id, ).\n\n The input:\n\n 1. A cell type ontology subgraph consisting of 4 cell types.\n\n CL:0000127\n ├── CL:0000644\n ├── CL:0002605\n └── CL:0002627\n\n 2. A gene expression dataframe consisting of expression numeric values for each\n (gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\n This value is held in a column called `n_cells_tissue`.\n 6. A cell counts dataframe that consists of cell counts for each\n (tissue_ontology_term_id, cell_type_ontology_term_id, ) tuple.\n 7. We set the `n_cells_tissue` column values to 1000 for all rows\n in the gene expression dataframe.\n 8. We set all other numeric column values to `1` in the gene expression dataframe.\n\n The expected output:\n\n 1. A rolled up gene expression dataframe.\n 2. A rolled up cell counts dataframe.\n 3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\n does not change for all rows because it should not be rolled up the cell type ontology\n ancestor paths.\n 4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\n in the rolled up gene expression dataframe hold the correct rolled up values.\n 5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\n rolled up values.\n ","descriptionHtml":"
Test that the `rollup` function correctly accumulates (or rolls up) gene-expression\nvalues FOR EACH expressed gene and cell count values up the cell type ANCESTOR paths\ngrouped by (tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>).\n\nThe input:\n\n1. A cell type ontology subgraph consisting of 4 cell types.\n\nCL:0000127\n├── CL:0000644\n├── CL:0002605\n└── CL:0002627\n\n2. A gene expression dataframe consisting of expression numeric values for each\n(gene_ontology_term_id, tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n3. The gene expression dataframe also holds total cell counts per tissue_ontology_term_id.\nThis value is held in a column called `n_cells_tissue`.\n6. A cell counts dataframe that consists of cell counts for each\n(tissue_ontology_term_id, cell_type_ontology_term_id, <compare_dimension>) tuple.\n7. We set the `n_cells_tissue` column values to 1000 for all rows\nin the gene expression dataframe.\n8. We set all other numeric column values to `1` in the gene expression dataframe.\n\nThe expected output:\n\n1. A rolled up gene expression dataframe.\n2. A rolled up cell counts dataframe.\n3. Assert that `n_cells_tissue` column value in the rolled up gene expression dataframe\ndoes not change for all rows because it should not be rolled up the cell type ontology\nancestor paths.\n4. Assert that other numeric column values (i.e the columns that are not `n_cells_tissue`)\nin the rolled up gene expression dataframe hold the correct rolled up values.\n5. Assert that the cell counts in the rolled up cell counts dataframe hold the correct\nrolled up values.\n
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'int32'}}"],"tags":[]},{"name":"test_get_spatial_metadata__is_single_true_and_no_library_id","uid":"f49c909d77dc365b","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332315871,"stop":1728332315872,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test_with_published","uid":"7bcce875005fa0ca","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332313742,"stop":1728332313743,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test_type_inference[parameters2]","uid":"fdcc42ee8c9638a7","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370397,"stop":1728332370397,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10,\n 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21,\n 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32,\n 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43,\n 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54,\n 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,\n 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76,\n 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87,\n 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,\n 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109,\n 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120,\n 121, 122, 123, 124, 125, 126, 127, -128, -127, -126, -125,\n -124, -123, -122, -121, -120, -119, -118, -117, -116, -115, -114,\n -113, -112, -111, -110, -109, -108, -107, -106, -105, -104, -103,\n -102, -101, -100, -99, -98, -97, -96, -95, -94, -93, -92,\n -91, -90, -89, -88, -87, -86, -85, -84, -83, -82, -81,\n -80, -79, -78, -77, -76, -75, -74, -73, -72, -71, -70,\n -69, -68, -67, -66, -65, -64, -63, -62, -61, -60, -59,\n -58, -57, -56, -55, -54, -53, -52, -51, -50, -49, -48,\n -47, -46, -45, -44, -43, -42, -41, -40, -39, -38, -37,\n -36, -35, -34, -33, -32, -31, -30, -29, -28, -27, -26,\n -25, -24, -23, -22, -21, -20, -19, -18, -17, -16, -15,\n -14, -13, -12, -11, -10, -9, -8, -7, -6, -5, -4,\n -3, -2, -1, 0, 1, 2, 3, 4, 5, 6, 7,\n 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18,\n 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29,\n 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40,\n 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62,\n 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73,\n 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84,\n 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95,\n 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106,\n 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117,\n 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, -128,\n -127, -126, -125, -124, -123, -122, -121, -120, -119, -118, -117,\n -116, -115, -114, -113, -112, -111, -110, -109, -108, -107, -106,\n -105, -104, -103, -102, -101, -100, -99, -98, -97, -96, -95,\n -94, -93, -92, -91, -90, -89, -88, -87, -86, -85, -84,\n -83, -82, -81, -80, -79, -78, -77, -76, -75, -74, -73,\n -72, -71, -70, -69, -68, -67, -66, -65, -64, -63, -62,\n -61, -60, -59, -58, -57, -56, -55, -54, -53, -52, -51,\n -50, -49, -48, -47, -46, -45, -44, -43, -42, -41, -40,\n -39, -38, -37, -36, -35, -34, -33, -32, -31, -30, -29,\n -28, -27, -26, -25, -24, -23, -22, -21, -20, -19, -18,\n -17, -16, -15, -14, -13, -12, -11, -10, -9, -8, -7,\n -6, -5, -4, -3, -2, -1, 0, 1, 2, 3, 4,\n 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,\n 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26,\n 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37,\n 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48,\n 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59,\n 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70,\n 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,\n 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92,\n 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114,\n 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125,\n 126, 127, -128, -127, -126, -125, -124, -123, -122, -121, -120,\n -119, -118, -117, -116, -115, -114, -113, -112, -111, -110, -109,\n -108, -107, -106, -105, -104, -103, -102, -101, -100, -99, -98,\n -97, -96, -95, -94, -93, -92, -91, -90, -89, -88, -87,\n -86, -85, -84, -83, -82, -81, -80, -79, -78, -77, -76,\n -75, -74, -73, -72, -71, -70, -69, -68, -67, -66, -65,\n -64, -63, -62, -61, -60, -59, -58, -57, -56, -55, -54,\n -53, -52, -51, -50, -49, -48, -47, -46, -45, -44, -43,\n -42, -41, -40, -39, -38, -37, -36, -35, -34, -33, -32,\n -31, -30, -29, -28, -27, -26, -25, -24, -23, -22, -21,\n -20, -19, -18, -17, -16, -15, -14, -13, -12, -11, -10,\n -9, -8, -7, -6, -5, -4, -3, -2, -1, 0, 1,\n 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23,\n 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34,\n 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45,\n 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56,\n 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67,\n 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78,\n 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89,\n 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100,\n 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111,\n 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122,\n 123, 124, 125, 126, 127, -128, -127, -126, -125, -124, -123,\n -122, -121, -120, -119, -118, -117, -116, -115, -114, -113, -112,\n -111, -110, -109, -108, -107, -106, -105, -104, -103, -102, -101,\n -100, -99, -98, -97, -96, -95, -94, -93, -92, -91, -90,\n -89, -88, -87, -86, -85, -84, -83, -82, -81, -80, -79,\n -78, -77, -76, -75, -74, -73, -72, -71, -70, -69, -68,\n -67, -66, -65, -64, -63, -62, -61, -60, -59, -58, -57,\n -56, -55, -54, -53, -52, -51, -50, -49, -48, -47, -46,\n -45, -44, -43, -42, -41, -40, -39, -38, -37, -36, -35,\n -34, -33, -32, -31, -30, -29, -28, -27, -26, -25],\n dtype=int8), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters84]","uid":"88ac849a699d83fb","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370756,"stop":1728332370757,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 NaN\n2 2\ndtype: category\nCategories (2, int64): [0, 2], 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'categorical'}, 'logs': {'level': 30, 'output': 'may lose precision'}}"],"tags":[]},{"name":"test__fetch_image_key_error","uid":"b36bad60b07a723c","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370294,"stop":1728332370294,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test_update_metadata__missing_rds","uid":"46d1ba79c38aa7df","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332314776,"stop":1728332314787,"duration":11},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test_type_inference[parameters10]","uid":"8b7afdd900be2673","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370434,"stop":1728332370434,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=int16), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_check_datasets_not_latest_version","uid":"78bc10134cb1a2e2","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332313829,"stop":1728332313830,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test_type_inference[parameters102]","uid":"82d261e2b93776b1","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370828,"stop":1728332370828,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'throws': }"],"tags":[]},{"name":"test_type_inference[parameters71]","uid":"eb6580b0860eaeb5","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370692,"stop":1728332370693,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': [0.0, 1.0, 2.0]\nCategories (3, float64): [0.0, 1.0, 2.0], 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'categorical'}, 'logs': {'level': 30, 'output': 'may lose precision'}}"],"tags":[]},{"name":"test_has_valid_artifact_statuses_1","uid":"41f06cd91ea6a4cb","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332314954,"stop":1728332314957,"duration":3},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test_type_inference[parameters69]","uid":"20f7eef1bda3dea8","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370681,"stop":1728332370682,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0.0\n1 1.0\n2 2.0\ndtype: category\nCategories (3, float64): [0.0, 1.0, 2.0], 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'categorical'}, 'logs': {'level': 30, 'output': 'may lose precision'}}"],"tags":[]},{"name":"test_type_inference[parameters22]","uid":"d8e7713f8e16da6c","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370490,"stop":1728332370490,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259,\n 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272,\n 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285,\n 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298,\n 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311,\n 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324,\n 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337,\n 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350,\n 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363,\n 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376,\n 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389,\n 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402,\n 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415,\n 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428,\n 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441,\n 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454,\n 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467,\n 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480,\n 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493,\n 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506,\n 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519,\n 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532,\n 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545,\n 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558,\n 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571,\n 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584,\n 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597,\n 598, 599, 600, 601, 602, 603, 604, 605, 606, 607, 608, 609, 610,\n 611, 612, 613, 614, 615, 616, 617, 618, 619, 620, 621, 622, 623,\n 624, 625, 626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636,\n 637, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 648, 649,\n 650, 651, 652, 653, 654, 655, 656, 657, 658, 659, 660, 661, 662,\n 663, 664, 665, 666, 667, 668, 669, 670, 671, 672, 673, 674, 675,\n 676, 677, 678, 679, 680, 681, 682, 683, 684, 685, 686, 687, 688,\n 689, 690, 691, 692, 693, 694, 695, 696, 697, 698, 699, 700, 701,\n 702, 703, 704, 705, 706, 707, 708, 709, 710, 711, 712, 713, 714,\n 715, 716, 717, 718, 719, 720, 721, 722, 723, 724, 725, 726, 727,\n 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,\n 741, 742, 743, 744, 745, 746, 747, 748, 749, 750, 751, 752, 753,\n 754, 755, 756, 757, 758, 759, 760, 761, 762, 763, 764, 765, 766,\n 767, 768, 769, 770, 771, 772, 773, 774, 775, 776, 777, 778, 779,\n 780, 781, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791, 792,\n 793, 794, 795, 796, 797, 798, 799, 800, 801, 802, 803, 804, 805,\n 806, 807, 808, 809, 810, 811, 812, 813, 814, 815, 816, 817, 818,\n 819, 820, 821, 822, 823, 824, 825, 826, 827, 828, 829, 830, 831,\n 832, 833, 834, 835, 836, 837, 838, 839, 840, 841, 842, 843, 844,\n 845, 846, 847, 848, 849, 850, 851, 852, 853, 854, 855, 856, 857,\n 858, 859, 860, 861, 862, 863, 864, 865, 866, 867, 868, 869, 870,\n 871, 872, 873, 874, 875, 876, 877, 878, 879, 880, 881, 882, 883,\n 884, 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,\n 897, 898, 899, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909,\n 910, 911, 912, 913, 914, 915, 916, 917, 918, 919, 920, 921, 922,\n 923, 924, 925, 926, 927, 928, 929, 930, 931, 932, 933, 934, 935,\n 936, 937, 938, 939, 940, 941, 942, 943, 944, 945, 946, 947, 948,\n 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 959, 960, 961,\n 962, 963, 964, 965, 966, 967, 968, 969, 970, 971, 972, 973, 974,\n 975, 976, 977, 978, 979, 980, 981, 982, 983, 984, 985, 986, 987,\n 988, 989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999],\n dtype=uint32), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters101]","uid":"f5ca9374520dfbe3","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370825,"stop":1728332370826,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'throws': }"],"tags":[]},{"name":"test_type_inference[parameters3]","uid":"bd2efe314e8e26da","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370403,"stop":1728332370403,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ..\n995 -29\n996 -28\n997 -27\n998 -26\n999 -25\nLength: 1000, dtype: int8, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_type_inference[parameters67]","uid":"3281e34faa1ec763","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370672,"stop":1728332370673,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0.0\n1 NaN\n2 2.0\ndtype: category\nCategories (2, float32): [0.0, 2.0], 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'categorical'}, 'logs': None}"],"tags":[]},{"name":"test_update_metadata__invalid_artifact_status","uid":"fe1ceefdeb54ba43","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332314737,"stop":1728332314749,"duration":12},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test__upload_update_by_dataset_id_owner__OK","uid":"efb46f5771a02d85","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332315008,"stop":1728332315010,"duration":2},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test_get_failure_slack_notification_message_with_dataset_version_id_none","uid":"8d35024469373f3e","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332365187,"stop":1728332365189,"duration":2},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test_error_wrapper","uid":"91431e1dcd570096","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332313693,"stop":1728332313694,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test_has_valid_artifact_statuses__invalid_cxg_status_0","uid":"1d3521fb2d8adc04","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332314959,"stop":1728332314962,"duration":3},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test_type_inference[parameters40]","uid":"61a93c4190cd6adb","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370567,"stop":1728332370568,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([-128., -127., -126., ..., 997., 998., 999.]), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'float32'}, 'logs': {'level': 30, 'output': 'may lose precision'}}"],"tags":[]},{"name":"test_type_inference[parameters21]","uid":"b5b192be12884d85","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370485,"stop":1728332370485,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': , 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_with_errors","uid":"9d5f6f5726d69e10","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332313789,"stop":1728332313794,"duration":5},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test_type_inference[parameters92]","uid":"e4719360e3945273","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370795,"stop":1728332370795,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': [-9223372036854775808, 9223372036854775807]\nCategories (2, int64): [-9223372036854775808, 9223372036854775807], 'throws': }"],"tags":[]},{"name":"test_convert_color_to_hex_format","uid":"fad131dd6cebbbe0","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332314307,"stop":1728332314307,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test_type_inference[parameters97]","uid":"9eb8f3de731f7027","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370813,"stop":1728332370814,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': Index(['a', True, 1, [], {}], dtype='object'), 'expected_encoding_dtype': dtype(', 'expected_schema_hint': {'type': 'categorical'}, 'logs': None}"],"tags":[]},{"name":"test_type_inference[parameters6]","uid":"80a441aeacdefa8f","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370416,"stop":1728332370416,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': array([ 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,\n 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25,\n 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,\n 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51,\n 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64,\n 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77,\n 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90,\n 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103,\n 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116,\n 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129,\n 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142,\n 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155,\n 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168,\n 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181,\n 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194,\n 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207,\n 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220,\n 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233,\n 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246,\n 247, 248, 249, 250, 251, 252, 253, 254, 255, 0, 1, 2, 3,\n 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16,\n 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29,\n 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42,\n 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55,\n 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68,\n 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81,\n 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94,\n 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107,\n 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120,\n 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133,\n 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146,\n 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159,\n 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172,\n 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185,\n 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198,\n 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211,\n 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224,\n 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237,\n 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250,\n 251, 252, 253, 254, 255, 0, 1, 2, 3, 4, 5, 6, 7,\n 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20,\n 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,\n 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,\n 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59,\n 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72,\n 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85,\n 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98,\n 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111,\n 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124,\n 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137,\n 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150,\n 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163,\n 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176,\n 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189,\n 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202,\n 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215,\n 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228,\n 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241,\n 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254,\n 255, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11,\n 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24,\n 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37,\n 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,\n 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,\n 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76,\n 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89,\n 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102,\n 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115,\n 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128,\n 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141,\n 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154,\n 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167,\n 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180,\n 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193,\n 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206,\n 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219,\n 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231],\n dtype=uint8), 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'int32'}}"],"tags":[]},{"name":"test_has_valid_artifact_statuses__invalid_h5ad_status_0","uid":"b856ffe97bf8dbb1","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332314969,"stop":1728332314971,"duration":2},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test__is_matrix_sparse_with_column_shift_encoding__giant_matrix_returns_false_early","uid":"52f137fb2fd6d357","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332365254,"stop":1728332365257,"duration":3},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":[],"tags":[]},{"name":"test_type_inference[parameters72]","uid":"1ecdbcc87e1c51db","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370697,"stop":1728332370698,"duration":1},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 NaN\n2 2\ndtype: category\nCategories (2, int8): [0, 2], 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 'categorical'}, 'logs': {'level': 30, 'output': 'may lose precision'}}"],"tags":[]},{"name":"test_type_inference[parameters23]","uid":"11337a387d607956","parentUid":"220f190b095384a428a86fbf1071b35f","status":"passed","time":{"start":1728332370496,"stop":1728332370496,"duration":0},"flaky":false,"newFailed":false,"newPassed":false,"newBroken":false,"retriesCount":0,"retriesStatusChange":false,"parameters":["{'data': 0 0\n1 1\n2 2\n3 3\n4 4\n ... \n995 995\n996 996\n997 997\n998 998\n999 999\nLength: 1000, dtype: uint32, 'expected_encoding_dtype': , 'expected_schema_hint': {'type': 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