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BigBWA Yarn option #13

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govind-emorphis opened this issue Jun 20, 2018 · 0 comments
Open

BigBWA Yarn option #13

govind-emorphis opened this issue Jun 20, 2018 · 0 comments

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@govind-emorphis
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We have tried to run the program and use yarn

yarn jar BigBWA-2.1.jar com.github.bigbwa.BigBWA -D mapreduce.input.fileinputformat.split.minsize=123641127
-D mapreduce.input.fileinputformat.split.maxsize=123641127
-D mapreduce.map.memory.mb=7500
-w "-R @rg\tID:foo\tLB:bar\tPL:illumina\tPU:illumina\tSM:ERR000589 -t 2"
-m -p --index /Data/HumanBase/hg19 -r ERR000589.fqBDP ExitERR000589
It gives error -
yarn: error: no such option: -D

Can you suggest how to resolve this issue ?
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@govind-emorphis