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pyproject.toml
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pyproject.toml
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[tool.poetry]
name = "callingCardsTools"
version = "1.8.0"
description = "A collection of objects and functions to work with calling cards sequencing tools"
authors = ["chase mateusiak <[email protected]>"]
license = "MIT"
readme = "README.md"
homepage = "https://cmatkhan.github.io/callingCardsTools/"
repository = "https://github.com/cmatKhan/callingCardsTools"
documentation = "https://cmatkhan.github.io/callingCardsTools/"
exclude = ['Dockerfile', '*temp_*','docs', 'site', 'tests', '.git','.venv','.github', 'Resources/yeast/README.md','mkdocs_requirements.txt']
include = ["callingcardstools/Resources"]
[tool.poetry.dependencies]
python = ">=3.9"
pandas = "^1.5.3"
pysam = "^0.19.1"
edlib = "^1.3.9"
biopython = "^1.81"
numpy = "^1.24.3"
scipy = "^1.11.4"
intervaltree = "^3.1.0"
pyranges = "^0.0.129"
[tool.poetry.group.dev.dependencies]
ipykernel = "^6.23.1"
docutils = "^0.19"
mkdocs = "^1.4.3"
mkdocs-material = "^8.5.11"
handler = "^1.3.0"
pytest-cov = "^3.0.0"
pipenv = "^2022.12.19"
pyright = "^1.1.309"
pytest = "^7.3.1"
memory-profiler = "^0.60.0"
mkdocs-section-index = "^0.3.5"
autopep8 = "^2.0.2"
griffe = "^0.36.7"
mkdocstrings = {extras = ["python"], version = "^0.23.0"}
mkdocs-autorefs = "^0.5.0"
matplotlib = "^3.8.3"
isort = "^5.13.2"
[tool.pyright]
include = ["callingcardstools"]
exclude = ["**/node_modules",
"**/__pycache__",
"src/experimental",
"src/typestubs",
"tests",
"temp"
]
defineConstant = { DEBUG = true }
stubPath = "src/stubs"
venvPath = "."
venv = ".venv"
reportMissingImports = true
reportMissingTypeStubs = false
pyripythonVersion = "3.9"
pythonPlatform = "Linux"
executionEnvironments = [
{ root = "src/web", pythonVersion = "3.5", pythonPlatform = "Windows", extraPaths = [ "src/service_libs" ] },
{ root = "src/sdk", pythonVersion = "3.0", extraPaths = [ "src/backend" ] },
{ root = "src/tests", extraPaths = ["src/tests/e2e", "src/sdk" ]},
{ root = "src" }
]
[tool.poetry.scripts]
callingcardstools = "callingcardstools:__main__.main"
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"