From 0e8bf367927044e77e62b104aa602835bb6dd7d0 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Wed, 24 May 2023 11:53:21 +0200 Subject: [PATCH] Add FY.3.1 (S:I210T, China) with 50 seqs --- lineage_notes.txt | 1 + lineages.csv | 59 +++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 60 insertions(+) diff --git a/lineage_notes.txt b/lineage_notes.txt index 695a55eb..82c4a646 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2804,6 +2804,7 @@ FY.1 Alias of XBB.1.22.1.1, Defined by ORF1b:D1782N FY.1.1 Alias of XBB.1.22.1.1.1, S:A83S, Malaysia/Japan FY.2 Alias of XBB.1.22.1.2, S:I197T, ORF1b:S997P, Indonesia, from #1859 FY.3 Alias of XBB.1.22.1.3, ORF1a:E750K, C23191T, China +FY.3.1 Alias of XBB.1.22.1.3.1, S:I210T, China FY.4 Alias of XBB.1.22.1.4, S:Y451H, A8374G, C25517T, Kenya, from #1979 XBB.1.22.2 Defined by ORF1a:L3829F, C15237T XBB.1.23 Defined by E:S68F, on 28297C branch, South East Asia diff --git a/lineages.csv b/lineages.csv index 44ead5e9..6e798d99 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2408815,3 +2408815,62 @@ BHR/991111621_S11_L001/2023,FY.1.1 BHR/900384131_S8_L001/2023,FY.1.1 BHR/940604299_S4_L001/2023,FY.1.1 BHR/950508802_S6_L001/2023,FY.1.1 +Shanghai/SCDC-HG0505-525/2023,FY.3.1 +CHN/SH-HG20230505-525/2023,FY.3.1 +CHN/BZCDC-52/2023,FY.3.1 +CHN/NJCDC281/2023,FY.3.1 +CHN/BZCDC-51/2023,FY.3.1 +CHN/SH-XG2304-3305/2023,FY.3.1 +CHN/HB-Ezhou-1037/2023,FY.3.1 +CHN/SH-HG20230505-524/2023,FY.3.1 +CHN/HB-Huangshi-1195/2023,FY.3.1 +CHN/SH-XG2305-3526/2023,FY.3.1 +Shanghai/SCDC-XG05-3526/2023,FY.3.1 +Shanghai/SCDC-HG0505-524/2023,FY.3.1 +Hubei/HCDC-1195/2023,FY.3.1 +Shanghai/SCDC-3305/2023,FY.3.1 +Hubei/HCDC-1037/2023,FY.3.1 +Hubei/HCDC-1115/2023,FY.3.1 +CHN/HB-Huanggang-1115/2023,FY.3.1 +CHN/SH-XG2304-3172/2023,FY.3.1 +Shanghai/SCDC-XG04-3172/2023,FY.3.1 +Shanghai/SCDC-XG05-3694/2023,FY.3.1 +CHN/SH-XG2305-3694/2023,FY.3.1 +CHN/HB-Huanggang-1236/2023,FY.3.1 +Hubei/HCDC-HG1236/2023,FY.3.1 +CHN/HB-Xiantao-1243/2023,FY.3.1 +Hubei/HCDC-XT1243/2023,FY.3.1 +CHN/BZCDC-49/2023,FY.3.1 +CHN/FYCDC-0232/2023,FY.3.1 +CHN/FYCDC-0246/2023,FY.3.1 +Shanghai/SCDC-XG05-3904/2023,FY.3.1 +Hubei/HCDC-0991/2023,FY.3.1 +CHN/HB-Jingzhou-0991/2023,FY.3.1 +CHN/SH-XG2304-3202/2023,FY.3.1 +CHN/FYCDC-0251/2023,FY.3.1 +Shanghai/SCDC-XG04-3202/2023,FY.3.1 +CHN/SQCDC087/2023,FY.3.1 +CHN/NJCDC285/2023,FY.3.1 +Hubei/HCDC-XY1390/2023,FY.3.1 +CHN/HB-Xiangyang-1390/2023,FY.3.1 +CHN/HB-Xiangyang-1389/2023,FY.3.1 +Hubei/HCDC-XY1389/2023,FY.3.1 +Shanghai/SCDC-XG05-4129/2023,FY.3.1 +CHN/FYCDC-0226/2023,FY.3.1 +CHN/HB-Suizhou-1332/2023,FY.3.1 +Hubei/HCDC-SZ1332/2023,FY.3.1 +CHN/SH-HG20230504-500/2023,FY.3.1 +Shanghai/SCDC-HG0504-500/2023,FY.3.1 +Shanghai/SCDC-3346/2023,FY.3.1 +CHN/SXJCCDC-JCCX230159/2023,FY.3.1 +CHN/LACDC-070/2023,FY.3.1 +CHN/LACDC-071/2023,FY.3.1 +CHN/SH-XG2304-3346/2023,FY.3.1 +CHN/LACDC-073/2023,FY.3.1 +Hubei/HCDC-1149/2023,FY.3.1 +CHN/HB-Ezhou-1149/2023,FY.3.1 +Hubei/HCDC-1137/2023,FY.3.1 +CHN/HB-Yichang-1137/2023,FY.3.1 +CHN/FZ23LG1378/2023,FY.3.1 +CHN/HB-Jingmen-1260/2023,FY.3.1 +Hubei/HCDC-JM1260/2023,FY.3.1