From 2b11a9d8c2daa2f71ba63d0ddf96e61e4d43a0d0 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Thu, 8 Aug 2024 16:19:56 -0300 Subject: [PATCH] Designate MK.3 (S:R346T, S:H445R) Resolves #2699 --- lineage_notes.txt | 1 + lineages.csv | 39 +++++++++++++++++++++++++++++++++++++-- 2 files changed, 38 insertions(+), 2 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 12344b1b..40d56ef2 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1204,6 +1204,7 @@ KP.3.1.5 Alias of B.1.1.529.2.86.1.1.11.1.3.1.5, S:N556K, ORF1a:Q998H, ORF3a:I18 KP.3.1.6 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6, T19305C MK.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6.1, S:S31F, UK MK.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6.2, S:D745G, after E:L21F +MK.3 Alias of B.1.1.529.2.86.1.1.11.1.3.1.6.3, S:R346T, S:H445R KP.3.1.7 Alias of B.1.1.529.2.86.1.1.11.1.3.1.7, S:L84I, from #2709 KP.3.2 Alias of B.1.1.529.2.86.1.1.11.1.3.2, A2611C, C22858T KP.3.2.1 Alias of B.1.1.529.2.86.1.1.11.1.3.2.1, S:A263V, Australia/Singapore, from sars-cov-2-variants/lineage-proposals#1556 diff --git a/lineages.csv b/lineages.csv index 4d4f7740..f4d5abf9 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2562438,8 +2562438,6 @@ USA/CA-CDPH-500137926/2024,KP.3.1.6 Canada/BC-BCCDC-716382/2024,KP.3.1.6 USA/NY-CDC-QDX95677494/2024,KP.3.1.6 USA/NY-SUNYQB-X9586/2024,KP.3.1.6 -USA/NY-PRL-240702_82D01/2024,KP.3.1.6 -USA/CO-CDPHE-41968347/2024,KP.3.1.6 USA/CO-CDPHE-41887863/2024,KP.3.1.6 USA/CA-SC-284333/2024,KP.3.1.6 USA/ND-USAFSAM-S22635/2024,KP.3.1.6 @@ -2564885,3 +2564883,40 @@ USA/NY-NPHL-240723_83C11/2024,MR.1 USA/NY-PRL-240723_83C11/2024,MR.1 USA/VA-GBW-GKISBBBC50723/2024,MR.1 USA/VA-GBW-GKPLAAAA37569/2024,MR.1 +USA/NJ-GBW-GKPLAAAA37230/2024,MK.3 +USA/NY-CDC-QDX20188647/2024,MK.3 +USA/NJ-CDC-QDX20255832/2024,MK.3 +USA/NJ-CDC-LC1109063/2024,MK.3 +USA/NJ-CDC-LC1109055/2024,MK.3 +USA/NY-CDC-QDX20555698/2024,MK.3 +USA/IA-SHL-2464808/2024,MK.3 +Denmark/DCGC-687464/2024,MK.3 +USA/IA-SHL-2468330/2024,MK.3 +USA/IA-SHL-2471529/2024,MK.3 +USA/IA-SHL-2464814/2024,MK.3 +USA/IA-SHL-2471522/2024,MK.3 +USA/CO-CDPHE-41968479/2024,MK.3 +USA/NY-PRL-240715_83B05/2024,MK.3 +USA/2468330/2024,MK.3 +USA/NY-CDC-QDX20555746/2024,MK.3 +USA/2464814/2024,MK.3 +USA/2464808/2024,MK.3 +USA/NY-NYULH-19820/2024,MK.3 +USA/CO-CDPHE-41968347/2024,MK.3 +USA/NY-CDC-LC1106755/2024,MK.3 +USA/NY-PRL-240702_82D01/2024,MK.3 +USA/CT-Yale-26009/2024,MK.3 +USA/NJ-GBW-GKISBBBD58482/2024,MK.3 +USA/NY-NPHL-240723_83D10/2024,MK.3 +USA/NY-PRL-240723_83D10/2024,MK.3 +USA/IL-RIPHL_123199_G/2024,MK.3 +USA/IL-NRIPHL_RIPHL_123199/2024,MK.3 +USA/NJ-GBW-GKPLAAAA32194/2024,MK.3 +USA/NJ-GBW-GKISBBBD40133/2024,MK.3 +USA/NY-PRL-240723_81A08/2024,MK.3 +USA/NJ-CDC-LC1110980/2024,MK.3 +USA/NY-NPHL-240723_81A08/2024,MK.3 +USA/DE-CDC-LC1108016/2024,MK.3 +USA/NY-PRL-240702_81E01/2024,MK.3 +Japan/FR012-0335/2024,MK.3 +Japan/FR012-0215/2024,MK.3