diff --git a/lineage_notes.txt b/lineage_notes.txt index c0f41bca..6c745df2 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2824,6 +2824,7 @@ XBB.1.5.95 ORF1:A1851V XBB.1.5.96 C28603T XBB.1.5.97 S:T941S, C7834T, New Zealand/Australia XBB.1.5.98 S:E554K, ORF8:V32L, Ghana +XBB.1.5.99 ORF1a:V1122A, ORF1a:T2121I, Slovakia/Austria XBB.1.6 USA, S:L216F, S:H146K, from issue #1428 XBB.1.7 USA-NY, S:V608I XBB.1.8 Denmark, S:186insSGG, C3241T From #1455 diff --git a/lineages.csv b/lineages.csv index 15bfd577..232d5a27 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2244408,7 +2244408,6 @@ USA/NJ-CDC-LC1005970/2023,XBB.1.5 USA/SC-CDC-QDX45960950/2023,XBB.1.5 Australia/NSW-NSWHP-41832/2023,XBB.1.5 USA/FL-CDC-QDX46136469/2023,XBB.1.5 -England/QEUH-326F2C86/2023,XBB.1.5 Denmark/DCGC-642488/2023,XBB.1.5 England/BRBR-326E1024/2023,XBB.1.5 USA/IL-RIPHL_121411_G/2023,XBB.1.5 @@ -2244579,7 +2244578,6 @@ USA/GA-CDC-QDX46499806/2023,XBB.1.5 Spain/CT-HUB07690/2023,XBB.1.5 USA/NJ-CDC-LC0977616/2022,XBB.1.5 USA/NY-PRL-221221_00F07/2022,XBB.1.5 -Austria/LB-R00127-S081/2023,XBB.1.5 USA/NY-ASC-210964056/2023,XBB.1.5 USA/VA-CAV_VAS3N_00017884_01/2023,XBB.1.5 USA/CT-Yale-24135/2023,XBB.1.5 @@ -2244748,7 +2244746,6 @@ USA/NJ-CDC-LC1020182/2023,XBB.1.5 Canada/ON-PHL-23-04919/2023,XBB.1.5 USA/FL-CDC-QDX46230073/2023,XBB.1.5 USA/NY-NYULH9651/2022,XBB.1.5 -Austria/AGES-1117810/2023,XBB.1.5 USA/CA-CDC-LC1022123/2023,XBB.1.5 USA/MI-CDC-QDX46501983/2023,XBB.1.5 Austria/MUIV-1623/2023,XBB.1.5 @@ -2245202,8 +2245199,6 @@ Canada/QC-L00586384001/2023,XBB.1.5 USA/MN-MDH-34436/2023,XBB.1.5 USA/TX-CDC-LC0994351/2023,XBB.1.5 USA/NY-CDC-LC1020451/2023,XBB.1.5 -Austria/LB-R00124-S269/2023,XBB.1.5 -Germany/SN-RKI-I-1113917/2023,XBB.1.5 USA/NC-CORVASEQ-1085-9280/2023,XBB.1.5 Austria/LB-R00128-S002/2023,XBB.1.5 Canada/ON-PHL-13940/2023,XBB.1.5 @@ -2245541,7 +2245536,6 @@ USA/CA-NSYMMPHL-NSYM6312/2023,XBB.1.5 Poland/Kce-299/2023,XBB.1.5 USA/VA-GBW-H20-278-8352/2023,XBB.1.5 Canada/BC-BCCDC-571512/2022,XBB.1.5 -Germany/BY-RKI-I-1112115/2023,XBB.1.5 USA/SC-CDC-QDX46275675/2023,XBB.1.5 USA/MN-MDH-34221/2023,XBB.1.5 USA/IN-CDC-LC1007232/2023,XBB.1.5 @@ -2245680,7 +2245674,6 @@ USA/CA-LACPHL-AF19492/2023,XBB.1.5 Canada/ON-PHL-23-03585/2023,XBB.1.5 USA/NJ-CDC-QDX46826236/2023,XBB.1.5 Mexico/CMX-INMEGEN-100-107/2023,XBB.1.5 -Austria/LB-R00125-S173/2023,XBB.1.5 Canada/ON-KHS-23-02553-v1/2023,XBB.1.5 USA/NY-CDC-LC1005834/2023,XBB.1.5 Canada/ON-PHL-23-07661/2023,XBB.1.5 @@ -2245811,7 +2245804,6 @@ USA/NC-CORVASEQ-1086-4408/2023,XBB.1.5 Netherlands/UT-RIVM-126281/2023,XBB.1.5 USA/NY-ASC-210996611/2023,XBB.1.5 USA/NY-CDC-QDX45961122/2023,XBB.1.5 -Austria/LB-R00127-S287/2023,XBB.1.5 Canada/ON-KHS-23-02329-v1/2023,XBB.1.5 Thailand/NIC_BKK_704/2023,XBB.1.5 France/OCC-HCL723000202901/2023,XBB.1.5 @@ -2245981,7 +2245973,6 @@ USA/MA-CDCBI-CRSP_NO7B2XGC4F65CUFY/2023,XBB.1.5 Austria/LB-R00127-S036/2023,XBB.1.5 USA/PA-PHL2-A-F04-0210/2023,XBB.1.5 USA/TX-HMH-MCoV-125421/2023,XBB.1.5 -Germany/SN-RKI-I-1118207/2023,XBB.1.5 Wales/PHWC-PKCXGJ/2023,XBB.1.5 Canada/ON-PHL-23-15644/2023,XBB.1.5 USA/IL-CDC-QDX46946390/2023,XBB.1.5 @@ -2246069,7 +2246060,6 @@ England/PLYM-326C7CF3/2023,XBB.1.5 USA/NY-CDC-LC0980374/2023,XBB.1.5 Israel/ICH-741194981/2022,XBB.1.5 USA/OH-CDC-QDX46678796/2023,XBB.1.5 -Austria/LB-R00126-S233/2023,XBB.1.5 Canada/ON-KHS-23-02451-v1/2023,XBB.1.5 USA/NJ-CDC-QDX47144885/2023,XBB.1.5 USA/NJ-CDC-LC1000863/2023,XBB.1.5 @@ -2246342,7 +2246332,6 @@ USA/IL-RIPHL_20913_G/2023,XBB.1.5 USA/NC-UNC-9253/2023,XBB.1.5 USA/IL-CDC-QDX45593686/2023,XBB.1.5 USA/NJ-PHEL-V23002880/2023,XBB.1.5 -Austria/AGES-1117882/2023,XBB.1.5 USA/NY-CDC-LC1002117/2023,XBB.1.5 USA/ND-CDC-2-6896469/2023,XBB.1.5 USA/MA-CDCBI-CRSP_A656NXIWCTJMEUF7/2023,XBB.1.5 @@ -2246495,7 +2246484,6 @@ USA/NY-PRL-221223_00A11/2022,XBB.1.5 USA/CA-CDC-LC0998719/2023,XBB.1.5 France/ARA-HCL-023029163601/2023,XBB.1.5 USA/MA-CDCBI-CRSP_CEBBSBEN5XQYXBFJ/2023,XBB.1.5 -USA/NY-PRL-230215_82E03/2023,XBB.1.5 Canada/ON-PHL-23-16213/2023,XBB.1.5 Scotland/SCOT-26326/2023,XBB.1.5 USA/NC-CORVASEQ-1086-4426/2023,XBB.1.5 @@ -2246878,7 +2246866,6 @@ England/QEUH-326E621A/2023,XBB.1.5 USA/CA-CDC-STM-TSSTC5AP7/2023,XBB.1.5 USA/CT-YNH-2607/2023,XBB.1.5 USA/CA-CDC-VSX-A062453/2023,XBB.1.5 -Germany/NW-RKI-I-1109398/2023,XBB.1.5 USA/RI-CDC-2-6731054/2022,XBB.1.5 USA/RI-CDC-2-6763483/2022,XBB.1.5 Germany/BE-ChVir-LB-230310-6175/2023,XBB.1.5 @@ -2247520,7 +2247507,6 @@ Canada/ON-PHL-23-16303/2023,XBB.1.5 USA/NC-MCPH-CLT-014175/2023,XBB.1.5 USA/CA-GBW-H20-289-9252/2023,XBB.1.5 USA/OH-CDC-QDX46448236/2023,XBB.1.5 -Austria/LB-R00127-S084/2023,XBB.1.5 USA/CA-CDC-QDX46776190/2023,XBB.1.5 USA/GA-CDC-QDX46775297/2023,XBB.1.5 USA/NY-CDC-QDX46501771/2023,XBB.1.5 @@ -2248096,7 +2248082,6 @@ USA/RI-CDC-813815600/2023,XBB.1.5 USA/CA-HLX-STM-FRE45JFFK/2023,XBB.1.5 USA/NY-NYULH10171/2023,XBB.1.5 USA/NY-CDC-LC0994230/2023,XBB.1.5 -Austria/LB-R00126-S012/2023,XBB.1.5 USA/CT-YNH-2466/2023,XBB.1.5 Canada/ON-KHS-23-01318/2023,XBB.1.5 USA/ID-USAFSAM-S21194/2023,XBB.1.5 @@ -2248749,7 +2248734,6 @@ USA/NY-Wadsworth-23008722-01/2023,XBB.1.5 Austria/MUIV-1758/2023,XBB.1.5 USA/TN-CDC-QDX46275672/2023,XBB.1.5 Canada/ON-KHS-23-01588/2023,XBB.1.5 -Austria/AGES-1112393/2023,XBB.1.5 USA/NY-Wadsworth-23006645-01/2023,XBB.1.5 Ireland/D-NVRL-SIRL00010686/2023,XBB.1.5 USA/FL-CDC-QDX46448033/2023,XBB.1.5 @@ -2248827,7 +2248811,6 @@ USA/LA-CDC-STM-4K4WJVCHG/2022,XBB.1.5 France/IDF-IPP-04460/2023,XBB.1.5 Austria/LB-R00120-S199/2023,XBB.1.5 Austria/MUIV-1738/2023,XBB.1.5 -Austria/AGES-1116822/2023,XBB.1.5 USA/UT-CDC-LC0983873/2023,XBB.1.5 Canada/ON-PHL-23-10597/2023,XBB.1.5 USA/CA-CDC-QDX46500685/2023,XBB.1.5 @@ -2248980,7 +2248963,6 @@ USA/CO-CDPHE-2103748861/2022,XBB.1.5 England/BRBR-326CE8F8/2023,XBB.1.5 USA/IL-CDC-LC1008451/2023,XBB.1.5 Canada/ON-KHS-23-02001-v1/2023,XBB.1.5 -Austria/AGES-1114712/2023,XBB.1.5 USA/TX-CDC-QDX46501296/2023,XBB.1.5 USA/OH-CDC-QDX46276375/2023,XBB.1.5 Austria/MUIV-1491/2023,XBB.1.5 @@ -2249023,7 +2249005,6 @@ USA/MA-CDCBI-CRSP_TV2MISWLLEIQBDBM/2022,XBB.1.5 Scotland/SCOT-25118/2023,XBB.1.5 USA/CT-YNH-2822/2023,XBB.1.5 Israel/ICH-741195827/2023,XBB.1.5 -Austria/LB-R00126-S265/2023,XBB.1.5 USA/GA-CDC-QDX46395581/2023,XBB.1.5 Canada/ON-PHL-11372/2023,XBB.1.5 Netherlands/OV-RIVM-126991/2023,XBB.1.5 @@ -2249124,7 +2249105,6 @@ USA/MA-CDCBI-CRSP_CM4GY5VQXN4OWWJG/2023,XBB.1.5 USA/CA-CDC-QDX46500630/2023,XBB.1.5 USA/CA-CDC-LC0993488/2023,XBB.1.5 USA/WA-PHL-032594/2023,XBB.1.5 -Austria/LB-R00123-S164/2023,XBB.1.5 USA/CA-CDC-LC1001366/2023,XBB.1.5 USA/DE-DHSS-B1259851/2023,XBB.1.5 USA/NJ-CDC-QDX46447172/2023,XBB.1.5 @@ -2250224,7 +2250204,6 @@ USA/NJ-CDC-QDX45961078/2023,XBB.1.5 England/BRBR-326B9526/2023,XBB.1.5 USA/NY-URMC-M9S1C981-1/2023,XBB.1.5 USA/MD-CDC-QDX47144902/2023,XBB.1.5 -Austria/LB-R00127-S132/2023,XBB.1.5 USA/DC-CDC-LC0990646/2023,XBB.1.5 USA/IN-CDC-LC1022478/2023,XBB.1.5 USA/FL-ASC-210964526/2023,XBB.1.5 @@ -2250264,7 +2250243,6 @@ USA/CA-CDC-VSX-A078245/2023,XBB.1.5 Canada/SK-RRPL-598917/2023,XBB.1.5 USA/WA-CDC-UW23022272460/2023,XBB.1.5 Canada/ON-PHL-12248/2023,XBB.1.5 -Austria/AGES-1112506/2023,XBB.1.5 USA/NY-PRL-221213_00G08/2022,XBB.1.5 England/BRBR-326CF6B1/2023,XBB.1.5 USA/NY-CDC-813199485/2023,XBB.1.5 @@ -2250447,7 +2250425,6 @@ USA/IL-CDC-QDX45961042/2023,XBB.1.5 Canada/ON-PHL-23-15023/2023,XBB.1.5 Poland/2303-009_wsselodz/2023,XBB.1.5 USA/TX-PHH-SPID1004428679/2022,XBB.1.5 -Austria/AGES-1114521/2023,XBB.1.5 USA/TX-HMH-MCoV-123882/2023,XBB.1.5 USA/SC-CDC-QDX45862843/2023,XBB.1.5 USA/CT-YNH-2519/2023,XBB.1.5 @@ -2250859,7 +2250836,6 @@ USA/NY-CDC-QDX45961660/2023,XBB.1.5 USA/PA-CDC-LC1020574/2023,XBB.1.5 USA/VA-CDC-QDX46447508/2023,XBB.1.5 Sweden/M628540/2023,XBB.1.5 -Austria/LB-R00125-S185/2023,XBB.1.5 USA/NY-PRL-221209_00I08/2022,XBB.1.5 USA/TX-HHD-23020150320/2023,XBB.1.5 USA/NY-CDC-QDX46447817/2023,XBB.1.5 @@ -2251009,7 +2250985,6 @@ USA/CA-ASC-210964462/2023,XBB.1.5 Canada/ON-PHL-12296/2023,XBB.1.5 USA/AZ-ASPHL-0517/2023,XBB.1.5 USA/MO-CDC-LC1008021/2023,XBB.1.5 -Austria/LB-R00127-S070/2023,XBB.1.5 USA/CA-CDC-VSX-A078210/2023,XBB.1.5 USA/KS-CDC-2-6895286/2023,XBB.1.5 USA/DC-CDC-LC0992583/2023,XBB.1.5 @@ -2251466,7 +2251441,6 @@ Canada/ON-PHL-10783/2023,XBB.1.5 USA/NJ-CDC-QDX45482909/2023,XBB.1.5 Brazil/SC-FIOCRUZ-698/2023,XBB.1.5 USA/WI-CDC-LC1014050/2023,XBB.1.5 -Austria/LB-R00125-S280/2023,XBB.1.5 USA/NC-MCPH-CLT-014105/2023,XBB.1.5 Canada/ON-KHS-23-00642-v1/2023,XBB.1.5 USA/NY-NYULH10314/2023,XBB.1.5 @@ -2251624,7 +2251598,6 @@ USA/TX-HMH-120837/2022,XBB.1.5 Israel/ICH-741195907/2023,XBB.1.5 USA/NJ-PHEL-V23003552/2023,XBB.1.5 USA/TX-HMH-MCoV-125796/2023,XBB.1.5 -Austria/LB-R00128-S275/2023,XBB.1.5 Germany/BW-RKI-I-1106147/2023,XBB.1.5 USA/NC-CDC-LC0993890/2023,XBB.1.5 Canada/ON-PHL-23-08436/2023,XBB.1.5 @@ -2251794,7 +2251767,6 @@ Germany/BY-LGL-5794351/2023,XBB.1.5 USA/CA-HLX-STM-ZXGBUE5DH/2023,XBB.1.5 Australia/QLD0x012EE4/2023,XBB.1.5 USA/VA-CDC-LC1009885/2023,XBB.1.5 -Austria/LB-R00125-S177/2023,XBB.1.5 USA/MD-CDC-LC0988166/2023,XBB.1.5 USA/CT-YPL23-352/2023,XBB.1.5 USA/NY-CDC-QDX46677933/2023,XBB.1.5 @@ -2252077,7 +2252049,6 @@ USA/NY-CDC-LC0988603/2023,XBB.1.5 USA/VA-CDC-VSX-A073672/2023,XBB.1.5 USA/VA-VTVAS3-GSC41550/2023,XBB.1.5 USA/NM-CDC-QDX46500517/2023,XBB.1.5 -Austria/LB-R00126-S273/2023,XBB.1.5 USA/NY-IVY-G43P91A0/2022,XBB.1.5 USA/VA-VTVAS3-GSC41876/2023,XBB.1.5 USA/NY-CDC-QDX45740209/2023,XBB.1.5 @@ -2363412,7 +2363383,6 @@ Germany/BW-RKI-I-1127700/2023,XBB.1.5.46 Germany/BW-RKI-I-1123962/2023,XBB.1.5.46 Germany/BE-RKI-I-1129579/2023,XBB.1.5.46 Germany/BW-RKI-I-1123952/2023,XBB.1.5.46 -Germany/NW-RKI-I-1132240/2023,XBB.1.5.46 Germany/NI-RKI-I-1132265/2023,XBB.1.5.46 Germany/NW-RKI-I-1129536/2023,XBB.1.5.46 Germany/BW-RKI-I-1118532/2023,XBB.1.5.46 @@ -2452906,3 +2452876,472 @@ USA/NY-PRL-230601_81G10/2023,HP.1.1 Spain/AS-40393/2023,HP.1.1 Spain/AS-40424/2023,HP.1.1 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