From b30181aa8cac81dedc752d052489ba4f8bf14f73 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Tue, 23 May 2023 17:41:11 +0200 Subject: [PATCH] Designate GF.1 (XBB.1.5.24.1 with S:E748V, C19524T) with 250 seqs --- lineage_notes.txt | 1 + lineages.csv | 291 +++++++++++++++++++++++++++++-- pango_designation/alias_key.json | 1 + 3 files changed, 278 insertions(+), 15 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 87c98cab..f4e78527 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2659,6 +2659,7 @@ GC.2 Alias of XBB.1.5.21.2, S:A352S, USA XBB.1.5.22 ORF1a:E1498A, pre T17124C, Australia XBB.1.5.23 ORF1a:P4220L, pre T17124C XBB.1.5.24 C2710T, pre T17124C +GF.1 Alias of XBB.1.5.24.1 S:E748V, C19524T XBB.1.5.25 S:97T on T10204C branch, South Africa, from #1643 XBB.1.5.26 920T, USA, from #1688 EU.1 Alias of XBB.1.5.26.1, S:P521S, Germany/Netherlands, from #1688 diff --git a/lineages.csv b/lineages.csv index b05131de..404ca3c0 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2232218,21 +2232218,6 @@ Austria/LB-R00128-S310/2023,XBB.1.5.24 Australia/NSW-ICPMR-42635/2023,XBB.1.5.24 Germany/BY-RKI-I-1116442/2023,XBB.1.5.24 Germany/BY-RKI-I-1107797/2023,XBB.1.5.24 -France/OCC-CHU-TLS-6003684805/2023,XBB.1.5.24 -Germany/BY-RKI-I-1114807/2023,XBB.1.5.24 -France/OCC-HCL-723000292201/2023,XBB.1.5.24 -Germany/BE-RKI-I-1113496/2023,XBB.1.5.24 -Australia/NSW-ICPMR-42626/2023,XBB.1.5.24 -Germany/BY-RKI-I-1109180/2023,XBB.1.5.24 -Singapore/R12MR28/2023,XBB.1.5.24 -Germany/BW-RKI-I-1103433/2023,XBB.1.5.24 -Italy/FVG-ASUGI-65344426/2023,XBB.1.5.24 -USA/VA-GBW-H10-011-1838/2023,XBB.1.5.24 -Germany/TH-RKI-I-1115304/2023,XBB.1.5.24 -Germany/BY-RKI-I-1112301/2023,XBB.1.5.24 -Germany/NW-RKI-I-1112665/2023,XBB.1.5.24 -Israel/ICH-741196244/2023,XBB.1.5.24 -Israel/ICH-741195917/2023,XBB.1.5.24 Jordan/RMSR14S82/2023,XBB.1.5.24 England/PHEC-YYERB7W/2023,XBB.1.5.24 Australia/NSW-ICPMR-42599/2023,XBB.1.5.24 @@ -2408260,3 +2408245,279 @@ France/HDF-IPP10698/2023,GB.1 France/HDF-IPP10699/2023,GB.1 Luxembourg/LNS4794011/2023,GB.1 Luxembourg/LNS6041366/2023,GB.1 +Singapore/R12MR28/2023,GF.1 +Germany/BY-RKI-I-1109180/2023,GF.1 +Australia/NSW-ICPMR-42626/2023,GF.1 +Germany/BE-RKI-I-1113496/2023,GF.1 +Germany/BY-RKI-I-1122642/2023,GF.1 +Germany/BW-RKI-I-1103433/2023,GF.1 +Indonesia/JI-ITD-60824NT/2023,GF.1 +Austria/AGES-1132892/2023,GF.1 +Germany/BY-RKI-I-1116718/2023,GF.1 +Germany/HH-RKI-I-1125161/2023,GF.1 +Germany/BY-RKI-I-1134588/2023,GF.1 +Singapore/R30MR55/2023,GF.1 +Austria/MUIV-1915/2023,GF.1 +Germany/SH-RKI-I-1134999/2023,GF.1 +Denmark/DCGC-644632/2023,GF.1 +Austria/AGES-1124013/2023,GF.1 +Austria/AGES-1124142/2023,GF.1 +Germany/HH-RKI-I-1135246/2023,GF.1 +Germany/HE-RKI-I-1126073/2023,GF.1 +CHN/SH-HG20230426-361/2023,GF.1 +Shanghai/SCDC-HG0426-361/2023,GF.1 +France/OCC-HCL-723000355601/2023,GF.1 +France/OCC-HCL-723000292201/2023,GF.1 +Germany/SH-RKI-I-1135099/2023,GF.1 +Germany/SN-RKI-I-1133569/2023,GF.1 +England/PHEP-YYGWFBK/2023,GF.1 +Germany/BY-RKI-I-1114807/2023,GF.1 +Japan/PG-469758/2023,GF.1 +Spain/CT-HUGTiP-H4R134/2023,GF.1 +Brunei/7123022972/2023,GF.1 +Brunei/7123022971/2023,GF.1 +Germany/SN-RKI-I-1130706/2023,GF.1 +Germany/NW-RKI-I-1112665/2023,GF.1 +Germany/BY-RKI-I-1123146/2023,GF.1 +Germany/BY-RKI-I-1116359/2023,GF.1 +Indonesia/JK-NIHRD-W01669/2023,GF.1 +Japan/PG-474827/2023,GF.1 +Indonesia/JK-NIHRD-W00863/2023,GF.1 +Indonesia/JK-GSILab-1151104/2023,GF.1 +Indonesia/JK-GSILab-1151078/2023,GF.1 +Germany/TH-RKI-I-1115304/2023,GF.1 +Germany/BY-RKI-I-1112301/2023,GF.1 +Germany/BW-RKI-I-1127520/2023,GF.1 +Germany/BW-RKI-I-1124870/2023,GF.1 +Germany/BW-RKI-I-1123789/2023,GF.1 +Sweden/01_SE100_23CS100938/2023,GF.1 +Sweden/01_SE100_23CS501496/2023,GF.1 +Sweden/31251587/2023,GF.1 +Sweden/31172769/2023,GF.1 +Sweden/31242578/2023,GF.1 +Sweden/31144377/2023,GF.1 +Sweden/01_SE100_23CS100887/2023,GF.1 +Sweden/01_SE100_23CS100860/2023,GF.1 +Malaysia/C19UMB3978/2023,GF.1 +Malaysia/C19UMB3983/2023,GF.1 +Brunei/7123023345/2023,GF.1 +Austria/AGES-1134784/2023,GF.1 +Austria/AGES-1134823/2023,GF.1 +Austria/AGES-1131814/2023,GF.1 +Austria/AGES-1131813/2023,GF.1 +USA/VT-23-003499-WGS-02/2023,GF.1 +Germany/BY-RKI-I-1118249/2023,GF.1 +USA/NC-CDC-VSX-A063806/2023,GF.1 +USA/NC-CORVASEQ-1085-9552/2023,GF.1 +Germany/BY-RKI-I-1133545/2023,GF.1 +USA/OH-PLMI-HHF3C-19057/2023,GF.1 +USA/OH-PLMI-HHF35-19333/2023,GF.1 +USA/OH-PLMI-HHF35-19224/2023,GF.1 +Israel/ICH-741196244/2023,GF.1 +France/ARA-HCL-723000350801/2023,GF.1 +Luxembourg/LNS4325187/2023,GF.1 +Israel/ICH-741195917/2023,GF.1 +England/PHEC-YYEZG7E/2023,GF.1 +Australia/NSW-ICPMR-45620/2023,GF.1 +Italy/VEN-IZSVe-23RS8107-2_VI/2023,GF.1 +Spain/MD-HRYC-12691073/2023,GF.1 +Scotland/SCOT-29254/2023,GF.1 +France/OCC-CHU-TLS-6003773712/2023,GF.1 +Portugal/PT47217/2023,GF.1 +France/OCC-CHU-TLS-6003684805/2023,GF.1 +France/ARA-CHUGA-3046186883/2023,GF.1 +France/OCC-HCL723000330901/2023,GF.1 +France/OCC-HCL023051662501/2023,GF.1 +France/OCC-CHU-TLS-6003795897/2023,GF.1 +France/OCC-CHU-TLS-6003797724/2023,GF.1 +France/OCC-CHU-TLS-6003769694/2023,GF.1 +France/OCC-HCL-723000604201/2023,GF.1 +France/OCC-HCL-723000633701/2023,GF.1 +France/HDF-IPP12021/2023,GF.1 +Belgium/AZDelta-2315-13102/2023,GF.1 +Denmark/DCGC-646260/2023,GF.1 +France/OCC-HCL723000611301/2023,GF.1 +Italy/UMB-LAOP-115218/2023,GF.1 +Germany/BE-RKI-I-1131468/2023,GF.1 +Germany/BE-RKI-I-1127514/2023,GF.1 +Croatia/HZJZ-3821/2023,GF.1 +Croatia/HZJZ-3998/2023,GF.1 +Croatia/HZJZ-3955/2023,GF.1 +Spain/GA-CHUVI-22135650/2023,GF.1 +Spain/GA-CHUVI-52078476/2023,GF.1 +Spain/GA-CHUVI-22137033/2023,GF.1 +Spain/AS-21268/2023,GF.1 +Spain/AS-232320253/2023,GF.1 +Spain/AS-HUCA-232319052/2023,GF.1 +Spain/CL-COV41551/2023,GF.1 +Spain/CL-COV41559/2023,GF.1 +Finland/THL-04873/2023,GF.1 +Spain/CL-COV41568/2023,GF.1 +Spain/CL-41219/2023,GF.1 +Spain/AS-232324124/2023,GF.1 +Spain/AS-21490/2023,GF.1 +France/NOR-IPP09348/2023,GF.1 +France/NOR-CHURouen-77049642/2023,GF.1 +France/NOR-CHURouen-77049638/2023,GF.1 +Japan/TKYkbm88825/2023,GF.1 +Australia/VIC83118/2023,GF.1 +Thailand/09-2429-0-02/2023,GF.1 +Germany/NW-RKI-I-1125312/2023,GF.1 +Germany/NW-RKI-I-1125299/2023,GF.1 +Switzerland/TI-EOC-42_27896710/2023,GF.1 +Oman/5235115/2023,GF.1 +Russia/SPE-RII-12928S/2023,GF.1 +Canada/AB-ABPHL-94852/2023,GF.1 +Spain/AN-PMC-35282/2023,GF.1 +Italy/FVG-ASUGI-65344426/2023,GF.1 +Spain/AN-PMC-35085/2023,GF.1 +USA/NY-MSHSPSP-PV84860/2023,GF.1 +USA/VA-CDC-LC1032473/2023,GF.1 +Egypt/CPHL-EGY22837/2023,GF.1 +Egypt/CPHL-EGY23049/2023,GF.1 +USA/VA-GBW-H10-011-1838/2023,GF.1 +BHR/920911412_S3_L001/2023,GF.1 +USA/VA-GBW-H20-286-5775/2023,GF.1 +Ireland/D-NVRL-17094/2023,GF.1 +Ireland/D-NVRL-SIRL00017094/2023,GF.1 +Ireland/D-NVRL-SIRL00017151/2023,GF.1 +BHR/T103826793/2023,GF.1 +Scotland/SCOT-29205/2023,GF.1 +Oman/7231164/2023,GF.1 +Lithuania/MB230301_0100/2023,GF.1 +USA/NJ-ASC-210972418/2023,GF.1 +USA/NY-CDC-QDX48247359/2023,GF.1 +USA/PA-CDC-QDX48192721/2023,GF.1 +SouthKorea/KDCA-233655/2023,GF.1 +SouthKorea/KDCA-234470/2023,GF.1 +SouthKorea/KDCA225717/2023,GF.1 +Israel/SMC-7113631/2023,GF.1 +USA/NY-CDC-QDX47594330/2023,GF.1 +Spain/CT-LabRefCat-8274686/2023,GF.1 +Canada/BC-BCCDC-618821/2023,GF.1 +Shanghai/SCDC-3338/2023,GF.1 +Shanghai/SCDC-XG05-3650/2023,GF.1 +CHN/FYCDC-0242/2023,GF.1 +CHN/LACDC-074/2023,GF.1 +CHN/FYCDC-0241/2023,GF.1 +CHN/FYCDC-0250/2023,GF.1 +CHN/LACDC-075/2023,GF.1 +CHN/FYCDC-0220/2023,GF.1 +CHN/NJCDC-233/2023,GF.1 +CHN/YNCDC-0549/2023,GF.1 +CHN/NJCDC-231/2023,GF.1 +CHN/NJCDC-230/2023,GF.1 +USA/NY-GBW-H20-316-9727/2023,GF.1 +CHN/NJCDC268/2023,GF.1 +CHN/FYCDC-0230/2023,GF.1 +CHN/GYCDC-CX202359/2023,GF.1 +Shanghai/SCDC-XG05-3771/2023,GF.1 +CHN/NJCDC-229/2023,GF.1 +CHN/NJCDC-215/2023,GF.1 +CHN/FZ23LG1370/2023,GF.1 +USA/NY-GBW-H10-012-3900/2023,GF.1 +CHN/LACDC-068/2023,GF.1 +CHN/NJCDC287/2023,GF.1 +CHN/SZCDC353/2023,GF.1 +CHN/LACDC-056/2023,GF.1 +CHN/NJCDC-234/2023,GF.1 +Anhui/SDPCC-28/2023,GF.1 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a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -159,6 +159,7 @@ "GC": "XBB.1.5.21", "GD": "XBB.1.9.3", "GE": "XBB.2.3.10", + "GF": "XBB.1.5.24", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"],