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XBB.1.5 lin with s:A623V and orf1a:v28i in guatamala (120 seqs) (one seq with S456L) #2270

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BorisUitham opened this issue Sep 6, 2023 · 0 comments
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XBB.1.5 lin with s:A623V and orf1a:v28i in guatamala (120 seqs) (one seq with S456L) #2270

BorisUitham opened this issue Sep 6, 2023 · 0 comments
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@BorisUitham
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Transferred from sars-cov-2-variants/lineage-proposals#351
Query: C23430t, g347a
First sequence: 2023-04-17
Latest sequence: 2023-08-16

623v is seen in some chronics. Like the dutch ba.1.17 one.
Orf1a:v28i seems to happen frequently all throughout, probably some mildly fitness increasing effect

One interesting sequence from the USA on 08-01 also has F456L: EPI_ISL_18098591

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_17fd4_7f3760.json?branchLabel=Spike%20mutations&f_userOrOld=uploaded%20sample&showBranchLabels=all
xbb15guata
@corneliusroemer corneliusroemer added the low priority For issues that are low priority for now label Sep 10, 2023
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