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JN.1.4 plus S:T572I ( 322 seqs) #2504

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FedeGueli opened this issue Feb 27, 2024 · 7 comments
Closed

JN.1.4 plus S:T572I ( 322 seqs) #2504

FedeGueli opened this issue Feb 27, 2024 · 7 comments

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@FedeGueli
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FedeGueli commented Feb 27, 2024 •
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Ex Branch 19 of sars-cov-2-variants/lineage-proposals#1097

JN.1.4> T18453C > S:T572I (C23277T)
Query: C23277T,T18453C,C774T,-G3085T,-G3085T,-T1483C,-C4795T,-T9769C,-C401T,-C29311T,-T18471C,-C2232T,-C25465T,-C1288T,-C3177T,-G910A,-C1762A,-G7393A,-C10748A,-C6781T,-A14487T,-C28201T,-G2202T,-A13308G,-C15277T,-C23595T,-T18164C,-C6541T,-C19320T,-A9782G,-T7734C,-A161G,-G6169T,-T11092A,-C7600T,-C19763T,-G910A,-A977C,-G18816C,-C23595T,-C8668T,-T13294C,-G10151A,-C8668T,-C23595T,-C17745T,-C1762A,-G6183A,- C14649T,-C26192T,-C10078T,-A7319G,-T14091C,-G25112T,-C1426T,
Samples: 74 (? @corneliusroemer i ve tried to exclude most of the unrelated branches but still not sure of the real numbers of this lineage
While here you can find the sequences put together by Usher in the tree of this lineage
image
Countries:12
Tree:
Screenshot 2024-02-27 alle 15 14 56
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/singleSubtreeAuspice_genome_test_2cdac_dec850.json?f_userOrOld=uploaded%20sample&label=id:node_6958375
@FedeGueli FedeGueli mentioned this issue Feb 27, 2024
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@FedeGueli FedeGueli changed the title JN.1.4 plus S:T572I ( 74 sequence-12 countries) JN.1.4 plus S:T572I ( 80 sequence-12 countries) Feb 29, 2024
@FedeGueli FedeGueli changed the title JN.1.4 plus S:T572I ( 80 sequence-12 countries) JN.1.4 plus S:T572I ( 108 sequence-20 countries) Mar 7, 2024
@FedeGueli
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FedeGueli commented Mar 7, 2024 •
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15 countries and close to 100 seqs i suggest a designation of this one @corneliusroemer although the query is a nightmare (now updated)

@FedeGueli FedeGueli changed the title JN.1.4 plus S:T572I ( 108 sequence-20 countries) JN.1.4 plus S:T572I ( 91 sequence-15 countries) Mar 7, 2024
@FedeGueli FedeGueli changed the title JN.1.4 plus S:T572I ( 91 sequence-15 countries) JN.1.4 plus S:T572I ( 88 sequence-15 countries) Mar 7, 2024
@FedeGueli FedeGueli changed the title JN.1.4 plus S:T572I ( 88 sequence-15 countries) JN.1.4 plus S:T572I ( 87 sequence-15 countries) Mar 7, 2024
@xz-keg
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xz-keg commented Mar 14, 2024

Designated JN.1.4.6

@FedeGueli
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Designated JN.1.4.6 via 58f350c

FedeGueli referenced this issue Mar 14, 2024
@corneliusroemer
Designate JN.1.4.6 (S:T572I, after T18453C)
58f350c
@FedeGueli FedeGueli changed the title JN.1.4 plus S:T572I ( 87 sequence-15 countries) JN.1.4 plus S:T572I ( 104 sequence-15 countries) Mar 17, 2024
@FedeGueli FedeGueli changed the title JN.1.4 plus S:T572I ( 104 sequence-15 countries) JN.1.4 plus S:T572I ( 97 sequence-15 countries) Mar 17, 2024
@FedeGueli
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97 with query updated

@FedeGueli FedeGueli changed the title JN.1.4 plus S:T572I ( 97 sequence-15 countries) JN.1.4 plus S:T572I ( 112 seqs) Mar 28, 2024
@FedeGueli FedeGueli changed the title JN.1.4 plus S:T572I ( 112 seqs) JN.1.4 plus S:T572I ( 151 seqs) Apr 17, 2024
@FedeGueli FedeGueli changed the title JN.1.4 plus S:T572I ( 151 seqs) JN.1.4 plus S:T572I ( 226 seqs) May 8, 2024
@FedeGueli
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226

@FedeGueli FedeGueli changed the title JN.1.4 plus S:T572I ( 226 seqs) JN.1.4 plus S:T572I ( 282 seqs) May 22, 2024
@FedeGueli FedeGueli changed the title JN.1.4 plus S:T572I ( 282 seqs) JN.1.4 plus S:T572I ( 308 seqs) Jun 10, 2024
@FedeGueli
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308

@FedeGueli FedeGueli changed the title JN.1.4 plus S:T572I ( 308 seqs) JN.1.4 plus S:T572I ( 322 seqs) Jun 20, 2024
@FedeGueli
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too messy

@FedeGueli FedeGueli closed this as not planned Won't fix, can't repro, duplicate, stale Jun 20, 2024
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@xz-keg @FedeGueli