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JN.1+S:F456L possible dead branch #2660

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DailyCovidCases opened this issue Jun 18, 2024 · 10 comments
Closed

JN.1+S:F456L possible dead branch #2660

DailyCovidCases opened this issue Jun 18, 2024 · 10 comments

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@DailyCovidCases
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DailyCovidCases commented Jun 18, 2024 •
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From sars-cov-2-variants/lineage-proposals#1253
Branch 44: 10 seqs, last sample was on 19 April 2024
usher
Branch 85: 5 seqs, last sample was on 6 May 2024
usher
Branch 78: 4 seqs, last sample was on 20 May 2024
usher
Branch 97: 4 seqs, last sample was on 15 May 2024
usher
Branch 90: 5 seqs, last sample was on 30 April 2024
usher
@FedeGueli
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All corrected now please close this.

@DailyCovidCases
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DailyCovidCases commented Jun 19, 2024 •
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Branch 76: 10 seqs, last sample was on 14 May 2024
usher
Branch 89: 7 seqs, last sample was on 27 April 2024
usher
Branch 88: 8 seqs, last sample was on 25 April 2024
usher
Branch 53: 26 seqs, last sample was on 13 May 2024
usher
Branch 16: 39 seqs, last sample was on 9 May 2024
usher
Branch 79: 17 seqs, last sample was on 28 May 2024
usher

@FedeGueli
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Alll corrected but. Branch 79 is far from dead

@FedeGueli
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branch 89 not dead

@FedeGueli
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FedeGueli commented Jun 19, 2024 •
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All corrected now , please close or transfer it to the secondary repo, Pango repo is not thought for this kind of issue.

Please read:#1988

@DailyCovidCases
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Possible dead branch as of 6/23/2024:
Branch 9: 89 seqs, last sample was on 27 May 2024
usher
Branch 38: 13 seqs, last sample was on 11 May 2024
usher
Branch 49: 19 seqs, last sample was on 24 May 2024
usher
Branch 63: 21 seqs, last sample was on 24 April 2024
usher
Branch 74: 23 seqs, last sample was on 13 May 2024
usher
Branch 100: 16 seqs, last sample was on 1 May 2024
usher
Branch 103: maybe it was only a small cluster, please close it

@FedeGueli
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done

@DailyCovidCases
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+) Possible dead branch as of 6/26/2024:
Branch 104: 6 seqs, last sample was on 23 May 2024:
usher
Branch 82: 144 seqs, last sample was on 22 May 2024:
usher
Branch 70: 25 seqs, last sample was on 24 May 2024:
usher
Branch 58: 64 seqs, last sample was on 26 May 2024
usher
Branch 25: 44 seqs
usher
+) Branches that worth be designated:
Branch 7: 253 seqs with an interesting combo branch with S:T572I
usher
Branch 11: 316 seqs
usher
Branch 15: 175 seqs
usher
Branch 22: 47 seqs, last sample was on 27 May 2024
usher
Branch 71: 54 seqs, last sample was on 3 June 2024:
usher
ping @corneliusroemer

@FedeGueli
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done

@DailyCovidCases DailyCovidCases closed this as not planned Won't fix, can't repro, duplicate, stale Jun 26, 2024
@DailyCovidCases
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DailyCovidCases commented Jul 30, 2024 •
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Branch 21: 85 seqs, last sample was on 22 June 2024
usher
Branch 36: 116 seqs, last sample was in June 2024:
usher
Branch 41: 16 seqs, last sample was on 22 June 2024
usher
Branch 58: 77 seqs, last sample was on 27 June 2024:
usher
Branch 73: 20 seqs, last sample was on 2 July 2024
usher

@DailyCovidCases DailyCovidCases closed this as not planned Won't fix, can't repro, duplicate, stale Aug 3, 2024
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@FedeGueli @DailyCovidCases