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XED:JN.1.4/LF.1.1.1 recombinant (37 seqs, 13 countries) #2691

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aviczhl2 opened this issue Jul 11, 2024 · 11 comments
Closed

XED:JN.1.4/LF.1.1.1 recombinant (37 seqs, 13 countries) #2691

aviczhl2 opened this issue Jul 11, 2024 · 11 comments

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@aviczhl2
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From sars-cov-2-variants/lineage-proposals#1642

JN.1.4--LF.1.1.1

Breakpoint between 19210 and 21652

Additional mutations: C9430T,A13308G, both from a JN.1.4 branch.
It gets spike from LF.1.1.1 (DeFLiRT+P1263L), and orf1ab from JN.1.4.

GISAID query: A13308G, T18453C, C25350T
No. of seqs: 18(USA 3(2 from UK, 1 from Ethiopia )UK 9 Ireland 1 Italy 1 France 1 Netherlands 1)

First: EPI_ISL_19085453, UK, 2024-4-16
Latest: EPI_ISL_19254597, USA from Ethiopia, 2024-6-27

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@aviczhl2
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20, Russia

@aviczhl2 aviczhl2 changed the title JN.1.4/LF.1.1.1 recombinant (18 seqs, 7 countries) JN.1.4/LF.1.1.1 recombinant (20 seqs, 8 countries) Jul 16, 2024
@FedeGueli
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FedeGueli commented Jul 20, 2024 •
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24 with two new countries Spain and Georgia , the two samples from Georgia have also S:K182N

@aviczhl2
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also in Denmark

@aviczhl2 aviczhl2 changed the title JN.1.4/LF.1.1.1 recombinant (20 seqs, 8 countries) JN.1.4/LF.1.1.1 recombinant (24 seqs, 11 countries) Jul 20, 2024
@FedeGueli
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also in Denmark

yeah i was meaning Denmark not Spain. Typo

@FedeGueli
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29 new country: Turkey

@aviczhl2 aviczhl2 changed the title JN.1.4/LF.1.1.1 recombinant (24 seqs, 11 countries) JN.1.4/LF.1.1.1 recombinant (30 seqs, 12 countries) Jul 25, 2024
@FedeGueli
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34

@FedeGueli
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FedeGueli commented Jul 30, 2024 •
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36, new country Russia (the Russian sample belongs to the S:L585F branch

@aviczhl2
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aviczhl2 commented Aug 5, 2024

37, Luxembourg

@aviczhl2 aviczhl2 changed the title JN.1.4/LF.1.1.1 recombinant (30 seqs, 12 countries) JN.1.4/LF.1.1.1 recombinant (37 seqs, 13 countries) Aug 5, 2024
@Over-There-Is
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39

@FedeGueli
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40 Hawaii

Ping @corneliusroemer even if this is not faster than KP.3.1.1 i think it is worth designating: 1) clearly described by authors 2) expanding in multiple countries

@FedeGueli
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Designated XED via 75076cc

@aviczhl2 aviczhl2 changed the title JN.1.4/LF.1.1.1 recombinant (37 seqs, 13 countries) XED:JN.1.4/LF.1.1.1 recombinant (37 seqs, 13 countries) Aug 9, 2024
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@aviczhl2 @Over-There-Is @FedeGueli