Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

MC.10+S:A435S,Orf9b:R47H (76 seqs, >10 places) #2781

Open
aviczhl2 opened this issue Sep 23, 2024 · 8 comments
Open

MC.10+S:A435S,Orf9b:R47H (76 seqs, >10 places) #2781

aviczhl2 opened this issue Sep 23, 2024 · 8 comments

Comments

@aviczhl2
Copy link
Contributor

From sars-cov-2-variants/lineage-proposals#1946

MC.10+G22865T,G28423A(Orf9b:R47H,S:A435S)

GISAID query: G22865T, G28423A, C16332T
No. of seqs: 37(USA 14(AZ,CA,IA,MN,NJ,NY,TX) Canada 10(NB,ON,QC) UK 6(England, Scotland) France 3 Germany 1 Denmark 1 Netherlands 1 Singapore 1)

First: EPI_ISL_19361831, USA-MN, 2024-7-26
Latest: EPI_ISL_19423471,USA-IA, 2024-9-14

usher
image

@FedeGueli
Copy link
Contributor

43, Slovenia

@Over-There-Is
Copy link
Contributor

a branch gets S:Q173K now.

@FedeGueli
Copy link
Contributor

FedeGueli commented Sep 28, 2024

a branch gets S:Q173K now.

Query for it: C22079A,G28423A

2 GBW samples (pooled) from two different airports collected on Sept 18 and 19.

@aviczhl2 i suggest to add to the main proposal

thx @Over-There-Is for spotting it

@aviczhl2 aviczhl2 changed the title MC.10+S:A435S,Orf9b:R47H (37 seqs, >10 places) MC.10+S:A435S,Orf9b:R47H (49 seqs, >10 places) Sep 29, 2024
@aviczhl2 aviczhl2 changed the title MC.10+S:A435S,Orf9b:R47H (49 seqs, >10 places) MC.10+S:A435S,Orf9b:R47H (76 seqs, >10 places) Oct 6, 2024
@aviczhl2
Copy link
Contributor Author

aviczhl2 commented Oct 6, 2024

C22079A,G28423A

still 1 GBW-BBB seq. at least wait for a second single-patient seq.

@aviczhl2
Copy link
Contributor Author

aviczhl2 commented Oct 6, 2024

This branch is 76 now and the fastest among KP.3.1.1-descendants. @corneliusroemer

@aviczhl2
Copy link
Contributor Author

aviczhl2 commented Oct 6, 2024

Crazy 49% advantage against KP.3.1.1 baseline
image

@FedeGueli
Copy link
Contributor

Crazy 49% advantage against KP.3.1.1 baseline

yeah it is the only Kp.3.1.1 that seems being close to XEC and ahead of quite everything else. Also conisdering that partly it depends by New Brunswick Canadian clusters i think it will be fast anyway

@FedeGueli
Copy link
Contributor

Also to be noticed the Three GBW from two airports with further S:Q173K (one from Japan)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

3 participants