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How to use pangolin naming other vrius? #549

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AceLi12138 opened this issue Aug 21, 2024 · 1 comment
Open

How to use pangolin naming other vrius? #549

AceLi12138 opened this issue Aug 21, 2024 · 1 comment

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@AceLi12138
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I want to use pangolin naming another vrius, but I don't know how to change the training dataset of pangolin how to re-train the model . I don't know if it is possible, but I think if users has the ability to name virus using pangolin, it will be great.

@AngieHinrichs
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Pangolin could be extended to support other viruses, but it would require some development work. The nextclade command line tool already has a mechanism to work with input datasets that (in theory) can be constructed for any virus. The nextclade team has added datasets for several viruses such as SARS-CoV-2, several influenza A subtypes, RSV and others. There are also some datasets contributed by the community. There is also a web version where you can see a list of viruses that are already supported and try it out.

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