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Adapt to new datascheme #21

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motey opened this issue Jun 7, 2021 · 2 comments
Open
1 of 4 tasks

Adapt to new datascheme #21

motey opened this issue Jun 7, 2021 · 2 comments
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Priority: Normal This issue can be dealt with when possible Status: Clarification Needed Additional information is needed to deal with this issue Status: In Dev This issue has been moved to the Dev environment for testing

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@motey
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motey commented Jun 7, 2021

With release V29 https://github.com/covidgraph/motherlode/releases/tag/V29 which is deployd to the dev database ( https://db-dev.covidgraph.org ) atm (as 07.06.2021) there are some minor changes in the BIOBASE loader datascheme.

Task to adapt:

@motey motey added Priority: Normal This issue can be dealt with when possible Status: Clarification Needed Additional information is needed to deal with this issue Status: In Dev This issue has been moved to the Dev environment for testing labels Jun 7, 2021
@mpreusse
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mpreusse commented Jun 7, 2021

Here is what changed in the data model:

There used to be the label :GeneSymbol which contained names for genes. This was a legacy model that made it into CovidGraph because we wanted to get started as soon as possible.

There is also the label :Gene which so far contained IDs for genes.

To make the model easier we renamed :GeneSymbol to :Gene and added a proeprty type='symbol' for all nodes that used to be :GeneSymbol.

For queries:

(g:Gene {type: 'symbol'}) == (g:GeneSymbol)

@motey motey assigned al-v-in and unassigned mpreusse Jun 7, 2021
@motey
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motey commented Jun 14, 2021

@al-v-in @ed-morgan
Do you think there must be made any adaptions on your side?

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Priority: Normal This issue can be dealt with when possible Status: Clarification Needed Additional information is needed to deal with this issue Status: In Dev This issue has been moved to the Dev environment for testing
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