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I'm actaully not sure that this is correct. Re-install takes -S but not -s.
The real question is whether it all behaves as expected and there are no nasty surprises for the user. I'm going to develop a couple of tests which will attempt to quantify what is going on.
Ref: https://cylc.discourse.group/t/jinja2-variable-differences-in-config-files-new-ones-are-not-being-respected/885
Ref: #5297
Description
VR check whether template variables have been changed using the CLI and raises an error if the workflow is running.
If you change the template variables using a plugin, however, this check is not carried out.
The check is currently carried out here:
cylc-flow/cylc/flow/scripts/validate_reinstall.py
Line 102 in 57fe4ae
Reproducible Example
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