From e879fab4759b711f215569abde1c1b71274dd8df Mon Sep 17 00:00:00 2001
From: Johannes Nussbaum <johannes.nussbaum@dasch.swiss>
Date: Sat, 17 Aug 2024 12:58:55 +0200
Subject: [PATCH 1/7] edit

---
 .pre-commit-config.yaml |   2 +-
 poetry.lock             | 858 +++++++++++++++++++++-------------------
 2 files changed, 442 insertions(+), 418 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index f647037e8..04d434170 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -5,7 +5,7 @@
 repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.5.6
+    rev: v0.6.1
     hooks:
       - id: ruff
         args:
diff --git a/poetry.lock b/poetry.lock
index 4f7327b7e..97fc670ce 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -13,13 +13,13 @@ files = [
 
 [[package]]
 name = "attrs"
-version = "24.1.0"
+version = "24.2.0"
 description = "Classes Without Boilerplate"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "attrs-24.1.0-py3-none-any.whl", hash = "sha256:377b47448cb61fea38533f671fba0d0f8a96fd58facd4dc518e3dac9dbea0905"},
-    {file = "attrs-24.1.0.tar.gz", hash = "sha256:adbdec84af72d38be7628e353a09b6a6790d15cd71819f6e9d7b0faa8a125745"},
+    {file = "attrs-24.2.0-py3-none-any.whl", hash = "sha256:81921eb96de3191c8258c199618104dd27ac608d9366f5e35d011eae1867ede2"},
+    {file = "attrs-24.2.0.tar.gz", hash = "sha256:5cfb1b9148b5b086569baec03f20d7b6bf3bcacc9a42bebf87ffaaca362f6346"},
 ]
 
 [package.extras]
@@ -32,13 +32,13 @@ tests-mypy = ["mypy (>=1.11.1)", "pytest-mypy-plugins"]
 
 [[package]]
 name = "babel"
-version = "2.15.0"
+version = "2.16.0"
 description = "Internationalization utilities"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "Babel-2.15.0-py3-none-any.whl", hash = "sha256:08706bdad8d0a3413266ab61bd6c34d0c28d6e1e7badf40a2cebe67644e2e1fb"},
-    {file = "babel-2.15.0.tar.gz", hash = "sha256:8daf0e265d05768bc6c7a314cf1321e9a123afc328cc635c18622a2f30a04413"},
+    {file = "babel-2.16.0-py3-none-any.whl", hash = "sha256:368b5b98b37c06b7daf6696391c3240c938b37767d4584413e8438c5c435fa8b"},
+    {file = "babel-2.16.0.tar.gz", hash = "sha256:d1f3554ca26605fe173f3de0c65f750f5a42f924499bf134de6423582298e316"},
 ]
 
 [package.extras]
@@ -584,153 +584,149 @@ dev = ["Sphinx (==7.2.5)", "colorama (==0.4.5)", "colorama (==0.4.6)", "exceptio
 
 [[package]]
 name = "lxml"
-version = "5.2.2"
+version = "5.3.0"
 description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API."
 optional = false
 python-versions = ">=3.6"
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 [[package]]
@@ -1835,141 +1853,141 @@ fixture = ["fixtures"]
 
 [[package]]
 name = "rpds-py"
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+version = "0.20.0"
 description = "Python bindings to Rust's persistent data structures (rpds)"
 optional = false
 python-versions = ">=3.8"
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-    {file = "testcontainers-4.7.2.tar.gz", hash = "sha256:9976b1cdcdeb9feeae6a477073e7c8b02cd40ea44f1daa34b5da6d2c918dff0d"},
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 ]
 
 [package.dependencies]
@@ -2045,10 +2063,12 @@ wrapt = "*"
 
 [package.extras]
 arangodb = ["python-arango (>=7.8,<8.0)"]
+aws = ["boto3", "httpx"]
 azurite = ["azure-storage-blob (>=12.19,<13.0)"]
 chroma = ["chromadb-client"]
 clickhouse = ["clickhouse-driver"]
 cosmosdb = ["azure-cosmos"]
+db2 = ["ibm_db_sa", "sqlalchemy"]
 generic = ["httpx"]
 google = ["google-cloud-datastore (>=2)", "google-cloud-pubsub (>=2)"]
 influxdb = ["influxdb", "influxdb-client"]
@@ -2069,6 +2089,7 @@ qdrant = ["qdrant-client"]
 rabbitmq = ["pika"]
 redis = ["redis"]
 registry = ["bcrypt"]
+scylla = ["cassandra-driver (==3.29.1)"]
 selenium = ["selenium"]
 sftp = ["cryptography"]
 test-module-import = ["httpx"]
@@ -2137,13 +2158,13 @@ files = [
 
 [[package]]
 name = "types-jsonschema"
-version = "4.23.0.20240712"
+version = "4.23.0.20240813"
 description = "Typing stubs for jsonschema"
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "types-jsonschema-4.23.0.20240813.tar.gz", hash = "sha256:c93f48206f209a5bc4608d295ac39f172fb98b9e24159ce577dbd25ddb79a1c0"},
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 ]
 
 [package.dependencies]
@@ -2151,36 +2172,36 @@ referencing = "*"
 
 [[package]]
 name = "types-lxml"
-version = "2024.4.14"
+version = "2024.8.7"
 description = "Complete lxml external type annotation"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
 cssselect = ">=1.2,<2.0"
 types-beautifulsoup4 = ">=4.12,<5.0"
-typing-extensions = ">=4.5,<5.0"
+typing_extensions = {version = ">=4.10,<5.0", markers = "python_version < \"3.13\""}
 
 [package.extras]
-test = ["beautifulsoup4 (>=4.8,<5.0)", "html5lib (==1.1)", "lxml (>=4.9)", "mypy (==1.9.*)", "pyright (>=1.1.289)", "pytest (>=7.0,<9)", "pytest-mypy-plugins (==1.11.1)", "tox (>=4.0,<5.0)", "typeguard (>=3.0,<5)"]
+test = ["beautifulsoup4 (>=4.8,<5.0)", "html5lib (==1.1)", "lxml (>=4.9)", "mypy (>=1.11.0,<1.12.0)", "pyright (>=1.1.351)", "pytest (>=7.0,<9)", "pytest-mypy-plugins (>=2.0)", "tox (>=4.0,<5.0)", "typeguard (>=3.0)", "typeguard (>=4.3.0)"]
 
 [[package]]
 name = "types-networkx"
-version = "3.2.1.20240806"
+version = "3.2.1.20240813"
 description = "Typing stubs for networkx"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
-numpy = ">=1.20,<2"
+numpy = ">=1.20"
 
 [[package]]
 name = "types-openpyxl"
@@ -2206,13 +2227,13 @@ files = [
 
 [[package]]
 name = "types-pyyaml"
-version = "6.0.12.20240724"
+version = "6.0.12.20240808"
 description = "Typing stubs for PyYAML"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [[package]]
@@ -2361,43 +2382,46 @@ full = ["orjson"]
 
 [[package]]
 name = "watchdog"
-version = "4.0.1"
+version = "4.0.2"
 description = "Filesystem events monitoring"
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "watchdog-4.0.2.tar.gz", hash = "sha256:b4dfbb6c49221be4535623ea4474a4d6ee0a9cef4a80b20c28db4d858b64e270"},
 ]
 
 [package.extras]
@@ -2405,13 +2429,13 @@ watchmedo = ["PyYAML (>=3.10)"]
 
 [[package]]
 name = "wcmatch"
-version = "8.5.2"
+version = "9.0"
 description = "Wildcard/glob file name matcher."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "wcmatch-8.5.2-py3-none-any.whl", hash = "sha256:17d3ad3758f9d0b5b4dedc770b65420d4dac62e680229c287bf24c9db856a478"},
-    {file = "wcmatch-8.5.2.tar.gz", hash = "sha256:a70222b86dea82fb382dd87b73278c10756c138bd6f8f714e2183128887b9eb2"},
+    {file = "wcmatch-9.0-py3-none-any.whl", hash = "sha256:af25922e2b6dbd1550fa37a4c8de7dd558d6c1bb330c641de9b907b9776cb3c4"},
+    {file = "wcmatch-9.0.tar.gz", hash = "sha256:567d66b11ad74384954c8af86f607857c3bdf93682349ad32066231abd556c92"},
 ]
 
 [package.dependencies]

From 301a18411fe6b718a33607b98ebe3a044b82f2d5 Mon Sep 17 00:00:00 2001
From: Johannes Nussbaum <johannes.nussbaum@dasch.swiss>
Date: Sat, 17 Aug 2024 13:00:10 +0200
Subject: [PATCH 2/7] code changes

---
 test/conftest.py                              |  2 +-
 .../ingest_xmlupload/test_ingest_xmlupload.py |  2 +-
 test/e2e/test_create_and_xmlupload.py         |  8 ++--
 .../commands/excel2json/test_json_header.py   |  2 +-
 .../commands/excel2json/test_new_lists.py     |  4 +-
 .../commands/excel2json/test_project.py       |  4 +-
 .../commands/excel2xml/test_excel2xml_cli.py  |  2 +-
 .../ingest_xmlupload/test_ingest_xmlupload.py |  2 +-
 .../commands/project/test_create_project.py   |  6 +--
 .../commands/project/test_models_project.py   |  2 +-
 .../xmlupload/test_resource_creation.py       |  2 +-
 test/integration/utils/test_xml_utils.py      |  4 +-
 .../excel2json/json_header_fixtures.py        | 48 +++++++++----------
 .../new_lists/fixtures_excel_sheets.py        | 40 ++++++++--------
 .../excel2json/test_models_json_header.py     | 22 ++++-----
 .../test_bulk_ingest_client.py                |  4 +-
 test/unittests/commands/test_id2iri.py        |  2 +-
 .../commands/xmlupload/models/test_ingest.py  |  8 ++--
 .../xmlupload/models/test_input_problems.py   |  8 ++--
 .../models/test_jsonld_serialiser.py          |  6 +--
 .../xmlupload/test_iiif_uri_validator.py      |  8 ++--
 .../commands/xmlupload/test_iri_resolver.py   |  2 +-
 22 files changed, 94 insertions(+), 94 deletions(-)

diff --git a/test/conftest.py b/test/conftest.py
index 36c4951ab..c678dc6c3 100644
--- a/test/conftest.py
+++ b/test/conftest.py
@@ -8,7 +8,7 @@
 from dsp_tools.utils.logger_config import logger_config
 
 
-@pytest.fixture()
+@pytest.fixture
 def caplog(_caplog: pytest.LogCaptureFixture) -> Iterator[pytest.LogCaptureFixture]:  # noqa: F811 (redefinition)
     """
     The caplog fixture that comes shipped with pytest does not support loguru.
diff --git a/test/e2e/commands/ingest_xmlupload/test_ingest_xmlupload.py b/test/e2e/commands/ingest_xmlupload/test_ingest_xmlupload.py
index 7776ce2e0..38f05dffc 100644
--- a/test/e2e/commands/ingest_xmlupload/test_ingest_xmlupload.py
+++ b/test/e2e/commands/ingest_xmlupload/test_ingest_xmlupload.py
@@ -28,7 +28,7 @@ def mapping_file() -> Iterator[Path]:
     mapping_file.unlink(missing_ok=True)
 
 
-@pytest.fixture()
+@pytest.fixture
 def _create_project() -> Iterator[None]:
     with get_containers():
         success = create_project(Path("testdata/json-project/test-project-e2e.json"), CREDS, verbose=True)
diff --git a/test/e2e/test_create_and_xmlupload.py b/test/e2e/test_create_and_xmlupload.py
index c17fd8621..502513a03 100644
--- a/test/e2e/test_create_and_xmlupload.py
+++ b/test/e2e/test_create_and_xmlupload.py
@@ -19,7 +19,7 @@
 RESCLASSES_IN_ONTO_JSON = 2
 
 
-@pytest.fixture()
+@pytest.fixture
 def _create_project() -> Iterator[None]:
     with get_containers():
         success = create_project(Path("testdata/json-project/test-project-e2e.json"), CREDS, verbose=True)
@@ -27,20 +27,20 @@ def _create_project() -> Iterator[None]:
         yield
 
 
-@pytest.fixture()
+@pytest.fixture
 def _xmlupload(_create_project: None) -> None:
     success = xmlupload(Path("testdata/xml-data/test-data-e2e.xml"), CREDS, ".")
     assert success
 
 
-@pytest.fixture()
+@pytest.fixture
 def auth_header(_create_project: None) -> dict[str, str]:
     payload = {"email": CREDS.user, "password": CREDS.password}
     token: str = requests.post(f"{CREDS.server}/v2/authentication", json=payload, timeout=3).json()["token"]
     return {"Authorization": f"Bearer {token}"}
 
 
-@pytest.fixture()
+@pytest.fixture
 def project_iri(_create_project: None) -> str:
     get_project_route = f"{CREDS.server}/admin/projects/shortcode/{PROJECT_SHORTCODE}"
     project_iri: str = requests.get(get_project_route, timeout=3).json()["project"]["id"]
diff --git a/test/integration/commands/excel2json/test_json_header.py b/test/integration/commands/excel2json/test_json_header.py
index ea99ad07a..3fb3e4b05 100644
--- a/test/integration/commands/excel2json/test_json_header.py
+++ b/test/integration/commands/excel2json/test_json_header.py
@@ -11,7 +11,7 @@
 from dsp_tools.models.exceptions import InputError
 
 
-@pytest.fixture()
+@pytest.fixture
 def filled_json_header() -> JsonHeader:
     test_path = Path("testdata/excel2json/new_excel2json_files/json_header.xlsx")
     return get_json_header(test_path)
diff --git a/test/integration/commands/excel2json/test_new_lists.py b/test/integration/commands/excel2json/test_new_lists.py
index d6fac10b0..4f898aa8b 100644
--- a/test/integration/commands/excel2json/test_new_lists.py
+++ b/test/integration/commands/excel2json/test_new_lists.py
@@ -10,14 +10,14 @@
 from dsp_tools.models.exceptions import InputError
 
 
-@pytest.fixture()
+@pytest.fixture
 def result_lists_correct() -> list[dict[str, Any]]:
     all_lists, _ = new_excel2lists(Path("testdata/excel2json/new_excel2json_files/lists"))
     all_lists = sorted(all_lists, key=lambda x: x["name"])
     return all_lists
 
 
-@pytest.fixture()
+@pytest.fixture
 def expected_lists() -> list[dict[str, Any]]:
     with open("testdata/excel2json/new-lists-output-expected.json", encoding="utf-8") as f:
         expected = json.load(f)
diff --git a/test/integration/commands/excel2json/test_project.py b/test/integration/commands/excel2json/test_project.py
index 56a3dc8f2..0746b9851 100644
--- a/test/integration/commands/excel2json/test_project.py
+++ b/test/integration/commands/excel2json/test_project.py
@@ -8,14 +8,14 @@
 from dsp_tools.commands.excel2json.project import _validate_folder_structure_get_filenames
 
 
-@pytest.fixture()
+@pytest.fixture
 def expected_project() -> dict[str, Any]:
     with open("testdata/excel2json/excel2json-expected-output.json", encoding="utf-8") as f:
         proj = json.load(f)
         return cast(dict[str, Any], proj)
 
 
-@pytest.fixture()
+@pytest.fixture
 def returned_project() -> dict[str, Any]:
     excel_folder = "testdata/excel2json/excel2json_files"
     listfolder, onto_folders = _validate_folder_structure_get_filenames(excel_folder)
diff --git a/test/integration/commands/excel2xml/test_excel2xml_cli.py b/test/integration/commands/excel2xml/test_excel2xml_cli.py
index e6f868ffd..675f38fed 100644
--- a/test/integration/commands/excel2xml/test_excel2xml_cli.py
+++ b/test/integration/commands/excel2xml/test_excel2xml_cli.py
@@ -9,7 +9,7 @@
 INVALID_EXCEL_DIRECTORY = "testdata/invalid-testdata/excel2xml"
 
 
-@pytest.fixture()
+@pytest.fixture
 def expected_output() -> str:
     with open("testdata/excel2xml/excel2xml-expected-output.xml", encoding="utf-8") as f:
         return f.read()
diff --git a/test/integration/commands/ingest_xmlupload/test_ingest_xmlupload.py b/test/integration/commands/ingest_xmlupload/test_ingest_xmlupload.py
index 4d8af2352..1a9346ae8 100644
--- a/test/integration/commands/ingest_xmlupload/test_ingest_xmlupload.py
+++ b/test/integration/commands/ingest_xmlupload/test_ingest_xmlupload.py
@@ -19,7 +19,7 @@ def _retrieve_mapping_file() -> Iterator[None]:
     Path(mapping_file.name).unlink()
 
 
-@pytest.fixture()
+@pytest.fixture
 def creds() -> ServerCredentials:
     return ServerCredentials(
         user="root@example.com",
diff --git a/test/integration/commands/project/test_create_project.py b/test/integration/commands/project/test_create_project.py
index 844de8aa5..b2f01e42b 100644
--- a/test/integration/commands/project/test_create_project.py
+++ b/test/integration/commands/project/test_create_project.py
@@ -17,7 +17,7 @@
 from dsp_tools.utils.shared import parse_json_input
 
 
-@pytest.fixture()
+@pytest.fixture
 def tp_systematic() -> dict[str, Any]:
     tp_systematic_file = "testdata/json-project/test-project-systematic.json"
     with open(tp_systematic_file, encoding="utf-8") as json_file:
@@ -25,13 +25,13 @@ def tp_systematic() -> dict[str, Any]:
     return tp_systematic
 
 
-@pytest.fixture()
+@pytest.fixture
 def tp_systematic_ontology(tp_systematic: dict[str, Any]) -> dict[str, Any]:
     onto: dict[str, Any] = tp_systematic["project"]["ontologies"][0]
     return onto
 
 
-@pytest.fixture()
+@pytest.fixture
 def tp_circular_ontology() -> dict[str, Any]:
     tp_circular_ontology_file = "testdata/invalid-testdata/json-project/circular-ontology.json"
     with open(tp_circular_ontology_file, encoding="utf-8") as json_file:
diff --git a/test/integration/commands/project/test_models_project.py b/test/integration/commands/project/test_models_project.py
index 08e624626..0b584f711 100644
--- a/test/integration/commands/project/test_models_project.py
+++ b/test/integration/commands/project/test_models_project.py
@@ -6,7 +6,7 @@
 from test.integration.commands.xmlupload.connection_mock import ConnectionMockBase
 
 
-@pytest.fixture()
+@pytest.fixture
 def project() -> Project:
     return Project(
         con=ConnectionMockBase(),
diff --git a/test/integration/commands/xmlupload/test_resource_creation.py b/test/integration/commands/xmlupload/test_resource_creation.py
index fcd802a13..172e2c948 100644
--- a/test/integration/commands/xmlupload/test_resource_creation.py
+++ b/test/integration/commands/xmlupload/test_resource_creation.py
@@ -26,7 +26,7 @@
 from dsp_tools.utils.connection_live import ConnectionLive
 
 
-@pytest.fixture()
+@pytest.fixture
 def ingest_client_mock():  # type: ignore[no-untyped-def]
     return Mock(spec_set=AssetClient)
 
diff --git a/test/integration/utils/test_xml_utils.py b/test/integration/utils/test_xml_utils.py
index e8d748a1c..53b2ec4ab 100644
--- a/test/integration/utils/test_xml_utils.py
+++ b/test/integration/utils/test_xml_utils.py
@@ -9,12 +9,12 @@
 from dsp_tools.utils.xml_utils import parse_and_clean_xml_file
 
 
-@pytest.fixture()
+@pytest.fixture
 def data_systematic_unclean() -> Path:
     return Path("testdata/xml-data/test-data-systematic.xml")
 
 
-@pytest.fixture()
+@pytest.fixture
 def data_systematic_cleaned() -> etree._Element:
     return parse_and_clean_xml_file(Path("testdata/xml-data/test-data-systematic.xml"))
 
diff --git a/test/unittests/commands/excel2json/json_header_fixtures.py b/test/unittests/commands/excel2json/json_header_fixtures.py
index f1c0f09a1..ba30fc669 100644
--- a/test/unittests/commands/excel2json/json_header_fixtures.py
+++ b/test/unittests/commands/excel2json/json_header_fixtures.py
@@ -4,56 +4,56 @@
 import pytest
 
 
-@pytest.fixture()
+@pytest.fixture
 def prefixes_good() -> pd.DataFrame:
     return pd.DataFrame(
         {"prefixes": ["foaf:", "sdh"], "uri": ["http://xmlns.com/foaf/0.1/", "https://ontome.net/ns/sdhss/"]}
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def prefixes_missing_col() -> pd.DataFrame:
     return pd.DataFrame({"uri": ["http://xmlns.com/foaf/0.1/", "https://ontome.net/ns/sdhss/"]})
 
 
-@pytest.fixture()
+@pytest.fixture
 def prefixes_missing_val() -> pd.DataFrame:
     return pd.DataFrame(
         {"prefixes": ["foaf:", pd.NA], "uri": ["http://xmlns.com/foaf/0.1/", "https://ontome.net/ns/sdhss/"]}
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def prefixes_wrong_val() -> pd.DataFrame:
     return pd.DataFrame({"prefixes": ["foaf:", "sdh"], "uri": ["http://xmlns.com/foaf/0.1/", "not a uri"]})
 
 
-@pytest.fixture()
+@pytest.fixture
 def project_good_missing_zero() -> pd.DataFrame:
     return pd.DataFrame({"shortcode": [11], "shortname": ["name"], "longname": ["long"]})
 
 
-@pytest.fixture()
+@pytest.fixture
 def project_good_no_zero() -> pd.DataFrame:
     return pd.DataFrame({"shortcode": [1111], "shortname": ["name"], "longname": ["long"]})
 
 
-@pytest.fixture()
+@pytest.fixture
 def project_missing_col() -> pd.DataFrame:
     return pd.DataFrame({"shortname": ["name"], "longname": ["long"]})
 
 
-@pytest.fixture()
+@pytest.fixture
 def project_missing_val() -> pd.DataFrame:
     return pd.DataFrame({"shortcode": [pd.NA], "shortname": ["name"], "longname": ["long"]})
 
 
-@pytest.fixture()
+@pytest.fixture
 def project_too_many_rows() -> pd.DataFrame:
     return pd.DataFrame({"shortcode": [11, 0], "shortname": ["name", pd.NA], "longname": ["long", "other"]})
 
 
-@pytest.fixture()
+@pytest.fixture
 def description_good() -> pd.DataFrame:
     return pd.DataFrame(
         {
@@ -65,7 +65,7 @@ def description_good() -> pd.DataFrame:
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def description_too_many_rows() -> pd.DataFrame:
     return pd.DataFrame(
         {
@@ -78,32 +78,32 @@ def description_too_many_rows() -> pd.DataFrame:
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def description_missing_col() -> pd.DataFrame:
     return pd.DataFrame({"other": ["english"]})
 
 
-@pytest.fixture()
+@pytest.fixture
 def description_missing_val() -> pd.DataFrame:
     return pd.DataFrame({"other": ["english"], "description_en": [pd.NA]})
 
 
-@pytest.fixture()
+@pytest.fixture
 def keywords_good() -> pd.DataFrame:
     return pd.DataFrame({"keywords": ["one", pd.NA, "three"]})
 
 
-@pytest.fixture()
+@pytest.fixture
 def keywords_missing_col() -> pd.DataFrame:
     return pd.DataFrame({"other": [1]})
 
 
-@pytest.fixture()
+@pytest.fixture
 def keywords_missing_val() -> pd.DataFrame:
     return pd.DataFrame({"other": [1], "keywords": [pd.NA]})
 
 
-@pytest.fixture()
+@pytest.fixture
 def users_good() -> pd.DataFrame:
     return pd.DataFrame(
         {
@@ -118,7 +118,7 @@ def users_good() -> pd.DataFrame:
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def users_missing_col() -> pd.DataFrame:
     return pd.DataFrame(
         {
@@ -132,7 +132,7 @@ def users_missing_col() -> pd.DataFrame:
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def users_missing_val() -> pd.DataFrame:
     return pd.DataFrame(
         {
@@ -147,7 +147,7 @@ def users_missing_val() -> pd.DataFrame:
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def users_wrong_lang() -> pd.DataFrame:
     return pd.DataFrame(
         {
@@ -162,7 +162,7 @@ def users_wrong_lang() -> pd.DataFrame:
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def user_good() -> pd.Series[str]:
     return pd.Series(
         {
@@ -177,7 +177,7 @@ def user_good() -> pd.Series[str]:
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def user_wrong_lang() -> pd.Series[str]:
     return pd.Series(
         {
@@ -192,7 +192,7 @@ def user_wrong_lang() -> pd.Series[str]:
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def user_wrong_email() -> pd.Series[str]:
     return pd.Series(
         {
@@ -207,7 +207,7 @@ def user_wrong_email() -> pd.Series[str]:
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def user_wrong_role() -> pd.Series[str]:
     return pd.Series(
         {
diff --git a/test/unittests/commands/excel2json/new_lists/fixtures_excel_sheets.py b/test/unittests/commands/excel2json/new_lists/fixtures_excel_sheets.py
index 1603ff81b..b9d3cd9a4 100644
--- a/test/unittests/commands/excel2json/new_lists/fixtures_excel_sheets.py
+++ b/test/unittests/commands/excel2json/new_lists/fixtures_excel_sheets.py
@@ -6,38 +6,38 @@
 from dsp_tools.commands.excel2json.new_lists.models.deserialise import ExcelSheet
 
 
-@pytest.fixture()
+@pytest.fixture
 def cols_en_list_only() -> Columns:
     return Columns(preferred_lang="en", list_cols=["en_list"], node_cols=[])
 
 
-@pytest.fixture()
+@pytest.fixture
 def cols_en_1() -> Columns:
     n_1 = ColumnNodes(level_num=1, columns=["en_1"])
     return Columns(preferred_lang="en", list_cols=["en_list"], node_cols=[n_1])
 
 
-@pytest.fixture()
+@pytest.fixture
 def cols_en_de_1() -> Columns:
     n_1 = ColumnNodes(level_num=1, columns=["en_1", "de_1"])
     return Columns(preferred_lang="en", list_cols=["en_list", "de_list"], node_cols=[n_1])
 
 
-@pytest.fixture()
+@pytest.fixture
 def cols_en_1_2() -> Columns:
     return Columns(
         preferred_lang="en", list_cols=["en_list"], node_cols=[ColumnNodes(1, ["en_1"]), ColumnNodes(2, ["en_2"])]
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def cols_en_de_1_2() -> Columns:
     n_1 = ColumnNodes(level_num=1, columns=["en_1", "de_1"])
     n_2 = ColumnNodes(level_num=2, columns=["en_2", "de_2"])
     return Columns(preferred_lang="en", list_cols=["en_list", "de_list"], node_cols=[n_1, n_2])
 
 
-@pytest.fixture()
+@pytest.fixture
 def cols_en_de_1_3() -> Columns:
     n_1 = ColumnNodes(level_num=1, columns=["en_1", "de_1"])
     n_2 = ColumnNodes(level_num=2, columns=["en_2", "de_2"])
@@ -45,7 +45,7 @@ def cols_en_de_1_3() -> Columns:
     return Columns(preferred_lang="en", list_cols=["en_list", "de_list"], node_cols=[n_1, n_2, n_3])
 
 
-@pytest.fixture()
+@pytest.fixture
 def f1_s1_good_en(cols_en_1: Columns) -> ExcelSheet:
     df = pd.DataFrame(
         {
@@ -57,7 +57,7 @@ def f1_s1_good_en(cols_en_1: Columns) -> ExcelSheet:
     return ExcelSheet(excel_name="file1", sheet_name="sheet1", df=df, col_info=cols_en_1)
 
 
-@pytest.fixture()
+@pytest.fixture
 def f2_s2_good_en_de(cols_en_de_1_3: Columns) -> ExcelSheet:
     df = pd.DataFrame(
         {
@@ -75,7 +75,7 @@ def f2_s2_good_en_de(cols_en_de_1_3: Columns) -> ExcelSheet:
     return ExcelSheet(excel_name="file2", sheet_name="sheet2", df=df, col_info=cols_en_de_1_3)
 
 
-@pytest.fixture()
+@pytest.fixture
 def f1_s1_good_id_filled(cols_en_de_1_3: Columns) -> ExcelSheet:
     df = pd.DataFrame(
         {
@@ -154,7 +154,7 @@ def f1_s1_good_id_filled(cols_en_de_1_3: Columns) -> ExcelSheet:
     return ExcelSheet(excel_name="excel1", sheet_name="sheet1", df=df, col_info=cols_en_de_1_3)
 
 
-@pytest.fixture()
+@pytest.fixture
 def f1_s1_empty_node_column(cols_en_1_2: Columns) -> ExcelSheet:
     df = pd.DataFrame(
         {
@@ -167,13 +167,13 @@ def f1_s1_empty_node_column(cols_en_1_2: Columns) -> ExcelSheet:
     return ExcelSheet(excel_name="file1", sheet_name="sheet1", df=df, col_info=cols_en_1_2)
 
 
-@pytest.fixture()
+@pytest.fixture
 def f1_s1_no_list_columns(cols_en_list_only: Columns) -> ExcelSheet:
     df = pd.DataFrame({"en_list": ["list1", "list1", "list1", "list1"]})
     return ExcelSheet(excel_name="file1", sheet_name="sheet1", df=df, col_info=cols_en_list_only)
 
 
-@pytest.fixture()
+@pytest.fixture
 def f1_s1_empty_list_column(cols_en_1_2: Columns) -> ExcelSheet:
     df = pd.DataFrame(
         {
@@ -185,7 +185,7 @@ def f1_s1_empty_list_column(cols_en_1_2: Columns) -> ExcelSheet:
     return ExcelSheet(excel_name="file1", sheet_name="sheet1", df=df, col_info=cols_en_1_2)
 
 
-@pytest.fixture()
+@pytest.fixture
 def f1_s1_missing_translation_id_filled(cols_en_de_1_2: Columns) -> ExcelSheet:
     df = pd.DataFrame(
         {
@@ -262,7 +262,7 @@ def f1_s1_missing_translation_id_filled(cols_en_de_1_2: Columns) -> ExcelSheet:
     return ExcelSheet(excel_name="excel1", sheet_name="sheet1", df=df, col_info=cols_en_de_1_2)
 
 
-@pytest.fixture()
+@pytest.fixture
 def f1_s2_list_empty() -> ExcelSheet:
     df = pd.DataFrame({"en_list": [pd.NA, pd.NA], "en_1": ["list1", "list1"]})
     return ExcelSheet(
@@ -270,13 +270,13 @@ def f1_s2_list_empty() -> ExcelSheet:
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def f1_s1_no_nodes() -> ExcelSheet:
     df = pd.DataFrame({"en_list": ["list1", "list1"]})
     return ExcelSheet(excel_name="file1", sheet_name="sheet1", df=df, col_info=Columns("en", ["en_list"], []))
 
 
-@pytest.fixture()
+@pytest.fixture
 def f2_s2_missing_lang_column(cols_en_de_1_3: Columns) -> ExcelSheet:
     df = pd.DataFrame(
         {
@@ -292,7 +292,7 @@ def f2_s2_missing_lang_column(cols_en_de_1_3: Columns) -> ExcelSheet:
     return ExcelSheet(excel_name="file2", sheet_name="sheet2", df=df, col_info=cols_en_de_1_3)
 
 
-@pytest.fixture()
+@pytest.fixture
 def f2_s2_missing_translations(cols_en_de_1_3: Columns) -> ExcelSheet:
     df = pd.DataFrame(
         {
@@ -310,7 +310,7 @@ def f2_s2_missing_translations(cols_en_de_1_3: Columns) -> ExcelSheet:
     return ExcelSheet(excel_name="file2", sheet_name="sheet2", df=df, col_info=cols_en_de_1_3)
 
 
-@pytest.fixture()
+@pytest.fixture
 def f2_s3_one_row(cols_en_1: Columns) -> ExcelSheet:
     df = pd.DataFrame(
         {
@@ -321,7 +321,7 @@ def f2_s3_one_row(cols_en_1: Columns) -> ExcelSheet:
     return ExcelSheet(excel_name="file2", sheet_name="sheet3", df=df, col_info=cols_en_1)
 
 
-@pytest.fixture()
+@pytest.fixture
 def f1_s1_identical_row(cols_en_1: Columns) -> ExcelSheet:
     df = pd.DataFrame(
         {
@@ -333,7 +333,7 @@ def f1_s1_identical_row(cols_en_1: Columns) -> ExcelSheet:
     return ExcelSheet(excel_name="file1", sheet_name="sheet1", df=df, col_info=cols_en_1)
 
 
-@pytest.fixture()
+@pytest.fixture
 def sheets_duplicate_id(cols_en_1: Columns) -> list[ExcelSheet]:
     df_1 = pd.DataFrame(
         {
diff --git a/test/unittests/commands/excel2json/test_models_json_header.py b/test/unittests/commands/excel2json/test_models_json_header.py
index c3284dc96..1d7d5cf77 100644
--- a/test/unittests/commands/excel2json/test_models_json_header.py
+++ b/test/unittests/commands/excel2json/test_models_json_header.py
@@ -12,57 +12,57 @@
 SCHEMA = "https://raw.githubusercontent.com/dasch-swiss/dsp-tools/main/src/dsp_tools/resources/schema/project.json"
 
 
-@pytest.fixture()
+@pytest.fixture
 def prefixes() -> Prefixes:
     return Prefixes({"dcelements": "http://purl.org/dc/elements/1.1/"})
 
 
-@pytest.fixture()
+@pytest.fixture
 def descriptions() -> Descriptions:
     return Descriptions({"de": "Beschreibungstext", "en": "description text"})
 
 
-@pytest.fixture()
+@pytest.fixture
 def keywords() -> Keywords:
     return Keywords(["Keyword 1"])
 
 
-@pytest.fixture()
+@pytest.fixture
 def user_sys_admin() -> User:
     return User("sys_admin", "sys_admin@email.ch", "given name1", "family name1", "PW1", "en", UserRole(sys_admin=True))
 
 
-@pytest.fixture()
+@pytest.fixture
 def user_member() -> User:
     return User("member", "member@email.ch", "given name2", "family name2", "PW2", "de", UserRole())
 
 
-@pytest.fixture()
+@pytest.fixture
 def user_admin() -> User:
     return User("admin", "admin@email.ch", "given name3", "family name3", "PW3", "de", UserRole(project_admin=True))
 
 
-@pytest.fixture()
+@pytest.fixture
 def users(user_sys_admin: User, user_member: User, user_admin: User) -> Users:
     return Users([user_sys_admin, user_member, user_admin])
 
 
-@pytest.fixture()
+@pytest.fixture
 def project_with_users(descriptions: Descriptions, keywords: Keywords, users: Users) -> Project:
     return Project("0001", "shortname", "Longname of the project", descriptions, keywords, users)
 
 
-@pytest.fixture()
+@pytest.fixture
 def project_no_users(descriptions: Descriptions, keywords: Keywords) -> Project:
     return Project("0001", "shortname", "Longname of the project", descriptions, keywords, None)
 
 
-@pytest.fixture()
+@pytest.fixture
 def filled_json_header_with_users_without_prefix(project_with_users: Project) -> FilledJsonHeader:
     return FilledJsonHeader(project_with_users, None)
 
 
-@pytest.fixture()
+@pytest.fixture
 def filled_json_header_with_users_with_prefix(project_no_users: Project, prefixes: Prefixes) -> FilledJsonHeader:
     return FilledJsonHeader(project_no_users, prefixes)
 
diff --git a/test/unittests/commands/ingest_xmlupload/test_bulk_ingest_client.py b/test/unittests/commands/ingest_xmlupload/test_bulk_ingest_client.py
index b4e6ea121..96ab51d2a 100644
--- a/test/unittests/commands/ingest_xmlupload/test_bulk_ingest_client.py
+++ b/test/unittests/commands/ingest_xmlupload/test_bulk_ingest_client.py
@@ -15,12 +15,12 @@
 SHORTCODE = "0001"
 
 
-@pytest.fixture()
+@pytest.fixture
 def ingest_client() -> BulkIngestClient:
     return BulkIngestClient(DSP_INGEST_URL, "token", SHORTCODE)
 
 
-@pytest.fixture()
+@pytest.fixture
 def tmp_file(tmp_path: Path) -> Path:
     return tmp_path / "filename_îïôœùûüÿ.xml"
 
diff --git a/test/unittests/commands/test_id2iri.py b/test/unittests/commands/test_id2iri.py
index 9fbb34b5a..06a149ab5 100644
--- a/test/unittests/commands/test_id2iri.py
+++ b/test/unittests/commands/test_id2iri.py
@@ -10,7 +10,7 @@
 from dsp_tools.models.exceptions import BaseError
 
 
-@pytest.fixture()
+@pytest.fixture
 def mapping() -> dict[str, str]:
     return {
         "test_thing_0": "http://rdfh.ch/082E/-lRvrg7tQI6aVpcTJbVrwg",
diff --git a/test/unittests/commands/xmlupload/models/test_ingest.py b/test/unittests/commands/xmlupload/models/test_ingest.py
index 724bf0967..9e7b8b18b 100644
--- a/test/unittests/commands/xmlupload/models/test_ingest.py
+++ b/test/unittests/commands/xmlupload/models/test_ingest.py
@@ -9,22 +9,22 @@
 from dsp_tools.models.exceptions import PermanentConnectionError
 
 
-@pytest.fixture()
+@pytest.fixture
 def dsp_ingest_url() -> str:
     return "https://example.com"
 
 
-@pytest.fixture()
+@pytest.fixture
 def shortcode() -> str:
     return "0001"
 
 
-@pytest.fixture()
+@pytest.fixture
 def ingest_client(dsp_ingest_url: str, shortcode: str) -> DspIngestClientLive:
     return DspIngestClientLive(dsp_ingest_url, "token", shortcode, ".")
 
 
-@pytest.fixture()
+@pytest.fixture
 def tmp_file(tmp_path: Path) -> Path:
     return tmp_path / "éèêëàâæç îïôœùûüÿ.xml"
 
diff --git a/test/unittests/commands/xmlupload/models/test_input_problems.py b/test/unittests/commands/xmlupload/models/test_input_problems.py
index f5c3b7cc7..f77ada086 100644
--- a/test/unittests/commands/xmlupload/models/test_input_problems.py
+++ b/test/unittests/commands/xmlupload/models/test_input_problems.py
@@ -5,7 +5,7 @@
 from dsp_tools.commands.xmlupload.models.input_problems import IIIFUriProblem
 
 
-@pytest.fixture()
+@pytest.fixture
 def iiif_exception() -> IIIFUriProblem:
     return IIIFUriProblem(
         uri="http://www.example.org/",
@@ -15,7 +15,7 @@ def iiif_exception() -> IIIFUriProblem:
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def iiif_uri_problem_ok_regex() -> IIIFUriProblem:
     return IIIFUriProblem(
         uri="https://iiif.dasch.swiss/0811/1Oi7mdiLsG7-FmFgp0xz2xU.jp2/full/837,530/0/default.jp2",
@@ -25,7 +25,7 @@ def iiif_uri_problem_ok_regex() -> IIIFUriProblem:
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def iiif_uri_problem_bad_regex() -> IIIFUriProblem:
     return IIIFUriProblem(
         uri="http://www.example.org/",
@@ -35,7 +35,7 @@ def iiif_uri_problem_bad_regex() -> IIIFUriProblem:
     )
 
 
-@pytest.fixture()
+@pytest.fixture
 def iiif_uri_problem_bad_regex_good_status_code() -> IIIFUriProblem:
     return IIIFUriProblem(
         uri="http://www.example.org/",
diff --git a/test/unittests/commands/xmlupload/models/test_jsonld_serialiser.py b/test/unittests/commands/xmlupload/models/test_jsonld_serialiser.py
index 94e719956..0368ec812 100644
--- a/test/unittests/commands/xmlupload/models/test_jsonld_serialiser.py
+++ b/test/unittests/commands/xmlupload/models/test_jsonld_serialiser.py
@@ -13,7 +13,7 @@
 MY_ONTO = Namespace("http://0.0.0.0:3333/ontology/0009/myonto/v2#")
 
 
-@pytest.fixture()
+@pytest.fixture
 def int_value() -> Graph:
     g = Graph()
     res_bn = BNode()
@@ -24,7 +24,7 @@ def int_value() -> Graph:
     return g
 
 
-@pytest.fixture()
+@pytest.fixture
 def int_value_with_comment() -> Graph:
     g = Graph()
     res_bn = BNode()
@@ -37,7 +37,7 @@ def int_value_with_comment() -> Graph:
     return g
 
 
-@pytest.fixture()
+@pytest.fixture
 def two_int_values() -> Graph:
     g = Graph()
     res_bn = BNode()
diff --git a/test/unittests/commands/xmlupload/test_iiif_uri_validator.py b/test/unittests/commands/xmlupload/test_iiif_uri_validator.py
index 232e666b9..ddce689d7 100644
--- a/test/unittests/commands/xmlupload/test_iiif_uri_validator.py
+++ b/test/unittests/commands/xmlupload/test_iiif_uri_validator.py
@@ -9,7 +9,7 @@
 from dsp_tools.commands.xmlupload.models.input_problems import IIIFUriProblem
 
 
-@pytest.fixture()
+@pytest.fixture
 def response_404() -> Response:
     mock_response = Response()
     mock_response.status_code = 404
@@ -17,7 +17,7 @@ def response_404() -> Response:
     return mock_response
 
 
-@pytest.fixture()
+@pytest.fixture
 def response_200() -> Response:
     mock_response = Response()
     mock_response.status_code = 200
@@ -25,12 +25,12 @@ def response_200() -> Response:
     return mock_response
 
 
-@pytest.fixture()
+@pytest.fixture
 def request_exception() -> RequestException:
     return RequestException("This is the request exception.")
 
 
-@pytest.fixture()
+@pytest.fixture
 def empty_validator() -> IIIFUriValidator:
     return IIIFUriValidator([])
 
diff --git a/test/unittests/commands/xmlupload/test_iri_resolver.py b/test/unittests/commands/xmlupload/test_iri_resolver.py
index a15da59b2..132817a82 100644
--- a/test/unittests/commands/xmlupload/test_iri_resolver.py
+++ b/test/unittests/commands/xmlupload/test_iri_resolver.py
@@ -3,7 +3,7 @@
 from dsp_tools.commands.xmlupload.iri_resolver import IriResolver
 
 
-@pytest.fixture()
+@pytest.fixture
 def resolver() -> IriResolver:
     return IriResolver()
 

From dae05f681113d172eae9f8d329d22af5539cb677 Mon Sep 17 00:00:00 2001
From: Johannes Nussbaum <johannes.nussbaum@dasch.swiss>
Date: Mon, 19 Aug 2024 07:18:38 +0200
Subject: [PATCH 3/7] remove unused config option

---
 pyproject.toml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 50c8f8ac2..fbdc6b5fc 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -230,4 +230,3 @@ convention = "google"
 
 [tool.ruff.lint.isort]
 force-single-line = true
-known-first-party = ["dsp_tools"]

From a1090bc024ca5a4082742b0c95a205dda4a4b970 Mon Sep 17 00:00:00 2001
From: Johannes Nussbaum <johannes.nussbaum@dasch.swiss>
Date: Mon, 19 Aug 2024 08:17:10 +0200
Subject: [PATCH 4/7] fix np.nan

---
 .../commands/excel2json/properties.py         |  4 +--
 .../commands/excel2json/test_utils.py         | 28 +++++++++----------
 2 files changed, 16 insertions(+), 16 deletions(-)

diff --git a/src/dsp_tools/commands/excel2json/properties.py b/src/dsp_tools/commands/excel2json/properties.py
index 214886fbd..b9c54c499 100644
--- a/src/dsp_tools/commands/excel2json/properties.py
+++ b/src/dsp_tools/commands/excel2json/properties.py
@@ -112,7 +112,7 @@ def excel2properties(
     return serialised_prop, True
 
 
-def _check_for_deprecated_syntax(df: pd.DataFrame) -> None:  # noqa: ARG001 (unused argument)
+def _check_for_deprecated_syntax(df: pd.DataFrame) -> None:
     pass
 
 
@@ -230,7 +230,7 @@ def _get_final_series(
         case None, None:
             return None
         case pd.Series(), pd.Series():
-            final_series = pd.Series(np.logical_or(mandatory_check, no_attribute_check))  # type: ignore[arg-type]
+            final_series = pd.Series(np.logical_or(mandatory_check, no_attribute_check))  # type: ignore[arg-type, assignment]
         case pd.Series(), None:
             final_series = mandatory_check  # type: ignore[assignment]
         case None, pd.Series():
diff --git a/test/unittests/commands/excel2json/test_utils.py b/test/unittests/commands/excel2json/test_utils.py
index ae788866e..1a6781258 100644
--- a/test/unittests/commands/excel2json/test_utils.py
+++ b/test/unittests/commands/excel2json/test_utils.py
@@ -200,24 +200,24 @@ def test_get_comments(self) -> None:
 def test_add_optional_columns_with_missing_cols() -> None:
     original_df = pd.DataFrame(
         {
-            "comment_en": ["text_en", np.NaN],
-            "comment_it": ["text_it", np.NaN],
-            "comment_rm": [np.NaN, np.NaN],
+            "comment_en": ["text_en", np.nan],
+            "comment_it": ["text_it", np.nan],
+            "comment_rm": [np.nan, np.nan],
         }
     )
     expected_df = pd.DataFrame(
         {
-            "comment_de": [np.NaN, np.NaN],
-            "comment_en": ["text_en", np.NaN],
-            "comment_fr": [np.NaN, np.NaN],
-            "comment_it": ["text_it", np.NaN],
-            "comment_rm": [np.NaN, np.NaN],
-            "label_de": [np.NaN, np.NaN],
-            "label_en": [np.NaN, np.NaN],
-            "label_fr": [np.NaN, np.NaN],
-            "label_it": [np.NaN, np.NaN],
-            "label_rm": [np.NaN, np.NaN],
-            "subject": [np.NaN, np.NaN],
+            "comment_de": [np.nan, np.nan],
+            "comment_en": ["text_en", np.nan],
+            "comment_fr": [np.nan, np.nan],
+            "comment_it": ["text_it", np.nan],
+            "comment_rm": [np.nan, np.nan],
+            "label_de": [np.nan, np.nan],
+            "label_en": [np.nan, np.nan],
+            "label_fr": [np.nan, np.nan],
+            "label_it": [np.nan, np.nan],
+            "label_rm": [np.nan, np.nan],
+            "subject": [np.nan, np.nan],
         }
     )
     optional_col_set = {

From 980c3ff748b2263436867e32369aeb2a4995271b Mon Sep 17 00:00:00 2001
From: Johannes Nussbaum <johannes.nussbaum@dasch.swiss>
Date: Mon, 19 Aug 2024 10:20:50 +0200
Subject: [PATCH 5/7] edit

---
 .pre-commit-config.yaml                                        | 2 +-
 src/dsp_tools/commands/excel2json/properties.py                | 2 +-
 .../commands/excel2xml/excel2xml_lib/test_make_props.py        | 2 ++
 .../commands/excel2xml/excel2xml_lib/test_prepare_value.py     | 3 ++-
 4 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 04d434170..5ac6bcb59 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -13,7 +13,7 @@ repos:
           - --ignore=ARG001  # unused function argument
           - --ignore=D101  # undocumented-public-class
           - --ignore=D102  # undocumented-public-method
-          - --ignore=F841  # error suppression
+          - --ignore=F841  # unused-variable
           - --ignore=FIX002  # line-contains-to-do
           - --ignore=PLR0913  # too-many-arguments
           - --ignore=PLR2004  # magic-value-comparison
diff --git a/src/dsp_tools/commands/excel2json/properties.py b/src/dsp_tools/commands/excel2json/properties.py
index b9c54c499..01f6c8f75 100644
--- a/src/dsp_tools/commands/excel2json/properties.py
+++ b/src/dsp_tools/commands/excel2json/properties.py
@@ -112,7 +112,7 @@ def excel2properties(
     return serialised_prop, True
 
 
-def _check_for_deprecated_syntax(df: pd.DataFrame) -> None:
+def _check_for_deprecated_syntax(df: pd.DataFrame) -> None:  # noqa: ARG001 (unused argument)
     pass
 
 
diff --git a/test/unittests/commands/excel2xml/excel2xml_lib/test_make_props.py b/test/unittests/commands/excel2xml/excel2xml_lib/test_make_props.py
index 23ffe1005..864767329 100644
--- a/test/unittests/commands/excel2xml/excel2xml_lib/test_make_props.py
+++ b/test/unittests/commands/excel2xml/excel2xml_lib/test_make_props.py
@@ -8,6 +8,7 @@
 from typing import Union
 
 import numpy as np
+import pandas as pd
 import pytest
 import regex
 from lxml import etree
@@ -303,6 +304,7 @@ def test_make_boolean_prop(self) -> None:
 
         unsupported_values: list[Any] = [
             np.nan,
+            pd.NA,
             "N/A",
             "NA",
             "na",
diff --git a/test/unittests/commands/excel2xml/excel2xml_lib/test_prepare_value.py b/test/unittests/commands/excel2xml/excel2xml_lib/test_prepare_value.py
index a8be90a0d..d935ae2f4 100644
--- a/test/unittests/commands/excel2xml/excel2xml_lib/test_prepare_value.py
+++ b/test/unittests/commands/excel2xml/excel2xml_lib/test_prepare_value.py
@@ -2,6 +2,7 @@
 from typing import Union
 
 import numpy as np
+import pandas as pd
 import pytest
 
 from dsp_tools import excel2xml
@@ -14,7 +15,7 @@ class TestPrepareValue(unittest.TestCase):
     def test_prepare_value(self) -> None:
         identical_values = ["Test", "Test", "Test"]
         different_values: list[Union[str, int, float]] = [1, 1.0, "1", "1.0", " 1 "]
-        values_with_nas: list[Union[str, int, float]] = ["test", "", 1, np.nan, 0]
+        values_with_nas: list[Union[str, int, float]] = ["test", "", 1, np.nan, pd.NA, 0]  # type: ignore[list-item]
 
         for val in different_values:
             values_output = excel2xml.prepare_value(val)

From 2e1f78ad6415403dd38ab716a8bb04c6804fe431 Mon Sep 17 00:00:00 2001
From: Johannes Nussbaum <johannes.nussbaum@dasch.swiss>
Date: Tue, 20 Aug 2024 12:02:19 +0200
Subject: [PATCH 6/7] downgrade testcontainers

---
 poetry.lock    | 11 ++++-------
 pyproject.toml |  2 +-
 2 files changed, 5 insertions(+), 8 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 97fc670ce..ec1f4e079 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -2046,13 +2046,13 @@ tests = ["pytest", "pytest-cov"]
 
 [[package]]
 name = "testcontainers"
-version = "4.8.0"
+version = "4.7.2"
 description = "Python library for throwaway instances of anything that can run in a Docker container"
 optional = false
 python-versions = "<4.0,>=3.9"
 files = [
-    {file = "testcontainers-4.8.0-py3-none-any.whl", hash = "sha256:0b85d787e5b1f8b32042704d23b6c54787bf6751d2d3cfee2c031349ef2eea30"},
-    {file = "testcontainers-4.8.0.tar.gz", hash = "sha256:56153bb5938694844f0e6bd0cf82e19dd6a6516bc29881440e273939201a42d5"},
+    {file = "testcontainers-4.7.2-py3-none-any.whl", hash = "sha256:23b13cf8078f615a08c75197f227796d90c46df92d2b282ae7c39b1fc1a9c9ed"},
+    {file = "testcontainers-4.7.2.tar.gz", hash = "sha256:9976b1cdcdeb9feeae6a477073e7c8b02cd40ea44f1daa34b5da6d2c918dff0d"},
 ]
 
 [package.dependencies]
@@ -2063,12 +2063,10 @@ wrapt = "*"
 
 [package.extras]
 arangodb = ["python-arango (>=7.8,<8.0)"]
-aws = ["boto3", "httpx"]
 azurite = ["azure-storage-blob (>=12.19,<13.0)"]
 chroma = ["chromadb-client"]
 clickhouse = ["clickhouse-driver"]
 cosmosdb = ["azure-cosmos"]
-db2 = ["ibm_db_sa", "sqlalchemy"]
 generic = ["httpx"]
 google = ["google-cloud-datastore (>=2)", "google-cloud-pubsub (>=2)"]
 influxdb = ["influxdb", "influxdb-client"]
@@ -2089,7 +2087,6 @@ qdrant = ["qdrant-client"]
 rabbitmq = ["pika"]
 redis = ["redis"]
 registry = ["bcrypt"]
-scylla = ["cassandra-driver (==3.29.1)"]
 selenium = ["selenium"]
 sftp = ["cryptography"]
 test-module-import = ["httpx"]
@@ -2582,4 +2579,4 @@ dev = ["doc8", "flake8", "flake8-import-order", "rstcheck[sphinx]", "sphinx"]
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.12"
-content-hash = "3f552c34657309671b3ddd8e45d415897177c2859494194b7ce6b18f459b5c92"
+content-hash = "aad9c3aa84c0198bd4e39830a6558d2785ac642f95acca09a6bbf84c24c2dfd6"
diff --git a/pyproject.toml b/pyproject.toml
index fbdc6b5fc..3b605ce4d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -64,7 +64,7 @@ pytest-sugar = "^1.0.0"
 pandas-stubs = "^2.2.1.240316"
 types-networkx = "^3.2.1.20240331"
 requests-mock = "^1.12.1"
-testcontainers =  "^4.4.1"
+testcontainers =  "4.7.2"
 docker = "^7.1.0"
 types-docker = "^7.0.0.20240529"
 pytest-cov = "^5.0.0"

From bcff9a225ce08620ea837db8c04de433a2e39a42 Mon Sep 17 00:00:00 2001
From: Johannes Nussbaum <johannes.nussbaum@dasch.swiss>
Date: Tue, 20 Aug 2024 12:04:43 +0200
Subject: [PATCH 7/7] fix linter

---
 .../commands/excel2json/new_lists/fixtures_excel_sheets.py      | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/test/unittests/commands/excel2json/new_lists/fixtures_excel_sheets.py b/test/unittests/commands/excel2json/new_lists/fixtures_excel_sheets.py
index d945c370d..f6f0aaf91 100644
--- a/test/unittests/commands/excel2json/new_lists/fixtures_excel_sheets.py
+++ b/test/unittests/commands/excel2json/new_lists/fixtures_excel_sheets.py
@@ -17,7 +17,7 @@ def cols_en_1() -> Columns:
     return Columns(preferred_lang="en", list_cols=["en_list"], comment_cols=["en_comment"], node_cols=[n_1])
 
 
-@pytest.fixture()
+@pytest.fixture
 def cols_en_1_no_comments() -> Columns:
     n_1 = ColumnNodes(level_num=1, columns=["en_1"])
     return Columns(preferred_lang="en", list_cols=["en_list"], comment_cols=[], node_cols=[n_1])