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The error is: Designing HOMO-OLIGOMER Traceback (most recent call last): File "DL_biosoft/LigandMPNN/run.py", line 794, in <module> main(args) File "DL_biosoft/LigandMPNN/run.py", line 315, in main tmp_list.append(encoded_residue_dict[name]) ~~~~~~~~~~~~~~~~~~~~^^^^^^ KeyError: 'A310'
`
Could you please help me solve this error? The PDB file is attached。 design_4.zip
Thank you.
The text was updated successfully, but these errors were encountered:
I've solved this issue by renumbering the PDB files using the "pdb_renumber.py" script in rosetta.
Could you please tell me if there are any other possible ways to solve this issue?
Thanks you.
@dauparas Thanks for you hard work. I think I found a bug. My command is:
python run.py \
--fixed_residues "A51 A52 A53 B154 B155 B156 C257 C258 C259 D360 D361 D362 E463 E464 E465 F566 F567 F568" `
--pdb_path "./design_4.pdb" `
--out_folder "./outputs/test" `
--batch_size 3 `
--number_of_batches 5 `
--temperature 0.1 `
--homo_oligomer 1`
The error is:
Designing HOMO-OLIGOMER
Traceback (most recent call last):
File "DL_biosoft/LigandMPNN/run.py", line 794, in <module>
main(args)
File "DL_biosoft/LigandMPNN/run.py", line 315, in main
tmp_list.append(encoded_residue_dict[name])
~~~~~~~~~~~~~~~~~~~~^^^^^^
KeyError: 'A310'
`
Could you please help me solve this error? The PDB file is attached。
design_4.zip
Thank you.
The text was updated successfully, but these errors were encountered: