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I noticed that the last column of "leafcutter_ds_cluster_significance.txt" might have more than one gene, I assume it's because the corresponding cluster has covered more than one gene. However, when I visualized it using Leafviz, not all the genes in this cluster have been alternatively spliced. If I'm looking for the genes that exhibited alt. splicing signals, should I use the output of "leafcutter_ds_cluster_significance.txt" directly, or do I need to do some more filtering?
cat leafcutter_ds_cluster_significance.txt
chr1:clu_3767_+ Not enough valid samples NA NA NA NA csde1
chr13:clu_3319_+ Success 0.183067402247616 1 0.545118706182438 0.716045758120999 rpl30
chr13:clu_3327_+ Success 2.34817687367581 5 0.454049140810089 0.640628501663129 LOC102216899,LOC102221983,LOC102229215,LOC102216637,LOC102217149
Thanks in advance!
Best,
Xiaomeng
The text was updated successfully, but these errors were encountered:
Hi,
Thanks for designing this tool!
I noticed that the last column of "leafcutter_ds_cluster_significance.txt" might have more than one gene, I assume it's because the corresponding cluster has covered more than one gene. However, when I visualized it using Leafviz, not all the genes in this cluster have been alternatively spliced. If I'm looking for the genes that exhibited alt. splicing signals, should I use the output of "leafcutter_ds_cluster_significance.txt" directly, or do I need to do some more filtering?
Thanks in advance!
Best,
Xiaomeng
The text was updated successfully, but these errors were encountered: