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more than one genes in one cluster #231

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XMTian opened this issue Apr 5, 2023 · 0 comments
Open

more than one genes in one cluster #231

XMTian opened this issue Apr 5, 2023 · 0 comments

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@XMTian
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XMTian commented Apr 5, 2023

Hi,

Thanks for designing this tool!

I noticed that the last column of "leafcutter_ds_cluster_significance.txt" might have more than one gene, I assume it's because the corresponding cluster has covered more than one gene. However, when I visualized it using Leafviz, not all the genes in this cluster have been alternatively spliced. If I'm looking for the genes that exhibited alt. splicing signals, should I use the output of "leafcutter_ds_cluster_significance.txt" directly, or do I need to do some more filtering?

cat leafcutter_ds_cluster_significance.txt
chr1:clu_3767_+	Not enough valid samples	NA	NA	NA	NA	csde1
chr13:clu_3319_+	Success	0.183067402247616	1	0.545118706182438	0.716045758120999	rpl30
chr13:clu_3327_+	Success	2.34817687367581	5	0.454049140810089	0.640628501663129	LOC102216899,LOC102221983,LOC102229215,LOC102216637,LOC102217149

Thanks in advance!
Best,
Xiaomeng

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