diff --git a/nuztf/ampel_api.py b/nuztf/ampel_api.py index 29833dcb..8260645d 100644 --- a/nuztf/ampel_api.py +++ b/nuztf/ampel_api.py @@ -16,9 +16,9 @@ # AMPEL API URLs API_BASEURL = "https://ampel.zeuthen.desy.de" -API_ZTF_ARCHIVE_URL = API_BASEURL + "/api/ztf/archive/v3" +API_ZTF_ARCHIVE_URL = API_BASEURL + "/api/ztf/archive/v2" API_CATALOGMATCH_URL = API_BASEURL + "/api/catalogmatch" -API_CUTOUT_URL = API_BASEURL + "/api/ztf/archive/v3/cutouts" +API_CUTOUT_URL = API_BASEURL + "/api/ztf/archive/v2/cutouts" _, ampel_api_archive_token = load_credentials("ampel_api_archive_token") diff --git a/nuztf/irsa.py b/nuztf/irsa.py index 85efccd8..7207c563 100644 --- a/nuztf/irsa.py +++ b/nuztf/irsa.py @@ -376,7 +376,7 @@ def plot_irsa_lightcurve( flux = (flux_j * f).to("erg cm-2 s-1") jerrs = magerrs.to(u.Jansky) - ferrs = (jerrs * f).to("erg cm-2 s-1").value - flux.value + ferrs = np.abs((jerrs * f).to("erg cm-2 s-1").value - flux.value) ax.errorbar( data["mjd"][mask], diff --git a/poetry.lock b/poetry.lock index a90051c7..2dfcc7eb 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,6 +1,6 @@ [[package]] name = "aiohttp" -version = "3.8.1" +version = "3.8.3" description = "Async http client/server framework (asyncio)" category = "main" optional = false @@ -16,7 +16,7 @@ multidict = ">=4.5,<7.0" yarl = ">=1.0,<2.0" [package.extras] -speedups = ["aiodns", "brotli", "cchardet"] +speedups = ["Brotli", "aiodns", "cchardet"] [[package]] name = "aiosignal" @@ -58,7 +58,7 @@ docs = ["Sphinx (>=5.1.1,<5.2.0)", "sphinx-autodoc-typehints (>=1.11.1,<2.0.0)", [[package]] name = "ampel-core" -version = "0.8.3b4" +version = "0.8.3b7" description = "Alice in Modular Provenance-Enabled Land" category = "main" optional = false @@ -83,7 +83,7 @@ slack = ["slack-sdk (>=3.18.1,<4.0.0)"] [[package]] name = "ampel-interface" -version = "0.8.3b5" +version = "0.8.3b6" description = "Base classes for the Ampel analysis platform" category = "main" optional = false @@ -124,7 +124,7 @@ docs = ["Sphinx (>=5.1.1,<5.2.0)", "sphinx-autodoc-typehints (>=1.11.1,<2.0.0)", [[package]] name = "ampel-ztf" -version = "0.8.3a4" +version = "0.8.3a2" description = "Zwicky Transient Facility support for the Ampel system" category = "main" optional = false @@ -132,10 +132,11 @@ python-versions = ">=3.10,<3.11" [package.dependencies] aiohttp = ">=3.7.3,<4.0.0" -ampel-alerts = ">=0.8.3-beta.1,<0.9.0" -ampel-core = ">=0.8.3-beta.3,<0.9.0" -ampel-interface = ">=0.8.3-beta.5,<0.9.0" -ampel-photometry = ">=0.8.3-alpha.2,<0.9.0" +ampel-alerts = ">=0.8.3-alpha.9,<0.9.0" +ampel-core = ">=0.8.3-alpha.11,<0.9.0" +ampel-interface = ">=0.8.3-alpha.11,<0.9.0" +ampel-photometry = ">=0.8.3-alpha.1,<0.9.0" +ampel-ztf-archive = {version = ">=0.8.0-alpha.0,<0.9.0", optional = true, markers = "extra == \"archive\""} astropy = ">=5.0,<6.0" backoff = ">=2.0.0,<3.0.0" fastavro = ">=1.3.2,<2.0.0" @@ -145,11 +146,42 @@ requests = ">=2.25.1,<3.0.0" requests-toolbelt = ">=0.9.1,<0.10.0" [package.extras] -archive = ["ampel-ztf-archive ()"] +archive = ["ampel-ztf-archive (>=0.8.0-alpha.0,<0.9.0)"] healpix = ["healpy (>=1.15,<2.0)"] kafka = ["confluent-kafka (>=1.5.0,<2.0.0)"] -light-curve = ["light-curve (>=0.6,<0.7)"] -plot = ["ampel-plot (==0.8.3)"] +light-curve = ["light-curve (>=0.2.5,<0.6)"] + +[[package]] +name = "ampel-ztf-archive" +version = "0.8.0a0" +description = "ZTF alert archive for the Ampel system" +category = "main" +optional = false +python-versions = ">=3.8,<4.0" + +[package.dependencies] +psycopg2 = ">=2.8.6,<3.0.0" +sqlalchemy = ">=1.3,<1.4" + +[package.extras] +server = ["fastapi (>=0.63.0,<0.64.0)"] + +[[package]] +name = "anyio" +version = "3.6.2" +description = "High level compatibility layer for multiple asynchronous event loop implementations" +category = "main" +optional = false +python-versions = ">=3.6.2" + +[package.dependencies] +idna = ">=2.8" +sniffio = ">=1.1" + +[package.extras] +doc = ["packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"] +test = ["contextlib2", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (<0.15)", "uvloop (>=0.15)"] +trio = ["trio (>=0.16,<0.22)"] [[package]] name = "appdirs" @@ -225,13 +257,13 @@ six = "*" [package.extras] all = ["astroquery", "matplotlib (>=1.4,<3.3)"] -docs = ["astroquery", "matplotlib (>=1.4,<3.3)", "sphinx-astropy", "sphinx-rtd-theme"] +docs = ["astroquery", "matplotlib (>=1.4,<3.3)", "sphinx-astropy", "sphinx_rtd_theme"] plotting = ["astroquery", "matplotlib (>=1.4,<3.3)"] test = ["pytest-astropy"] [[package]] name = "astropy" -version = "5.1" +version = "5.1.1" description = "Astronomy and astrophysics core library" category = "main" optional = false @@ -244,11 +276,11 @@ pyerfa = ">=2.0" PyYAML = ">=3.13" [package.extras] -all = ["asdf (>=2.10.0)", "beautifulsoup4", "bleach", "bottleneck", "certifi", "dask", "h5py", "html5lib", "ipython (>=4.2)", "jplephem", "matplotlib (>=3.1,!=3.4.0,!=3.5.2)", "mpmath", "pandas", "pyarrow (>=5.0.0)", "pytest (>=7.0)", "pytz", "scipy (>=1.3)", "sortedcontainers", "typing-extensions (>=3.10.0.1)"] -docs = ["Jinja2 (<3.1)", "matplotlib (>=3.1,!=3.4.0,!=3.5.2)", "pytest (>=7.0)", "scipy (>=1.3)", "sphinx (<4)", "sphinx-astropy (>=1.6)", "sphinx-changelog (>=1.1.0)"] +all = ["asdf (>=2.10.0)", "beautifulsoup4", "bleach", "bottleneck", "certifi", "dask[array]", "h5py", "html5lib", "ipython (>=4.2)", "jplephem", "matplotlib (>=3.1,!=3.4.0,!=3.5.2)", "mpmath", "pandas", "pyarrow (>=5.0.0)", "pytest (>=7.0)", "pytz", "scipy (>=1.3)", "sortedcontainers", "typing-extensions (>=3.10.0.1)"] +docs = ["Jinja2 (<3.1)", "matplotlib (>=3.1,!=3.4.0,!=3.5.2)", "pytest (>=7.0)", "scipy (>=1.3)", "sphinx (<4)", "sphinx-astropy (>=1.6)", "sphinx-changelog (>=1.2.0)"] recommended = ["matplotlib (>=3.1,!=3.4.0,!=3.5.2)", "scipy (>=1.3)"] test = ["pytest (>=7.0)", "pytest-astropy (>=0.10)", "pytest-astropy-header (>=0.2.1)", "pytest-doctestplus (>=0.12)", "pytest-xdist"] -test_all = ["coverage", "ipython (>=4.2)", "objgraph", "pytest (>=7.0)", "pytest-astropy (>=0.9)", "pytest-astropy-header (>=0.2.1)", "pytest-doctestplus (>=0.12)", "pytest-xdist", "sgp4 (>=2.3)", "skyfield (>=1.20)"] +test-all = ["coverage", "ipython (>=4.2)", "objgraph", "pooch", "pytest (>=7.0)", "pytest-astropy (>=0.10)", "pytest-astropy-header (>=0.2.1)", "pytest-doctestplus (>=0.12)", "pytest-xdist", "sgp4 (>=2.3)", "skyfield (>=1.20)"] [[package]] name = "astropy-healpix" @@ -322,7 +354,7 @@ python-versions = ">=3.5" dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy (>=0.900,!=0.940)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "sphinx", "sphinx-notfound-page", "zope.interface"] docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"] tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "zope.interface"] -tests_no_zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"] +tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"] [[package]] name = "backcall" @@ -334,7 +366,7 @@ python-versions = "*" [[package]] name = "backoff" -version = "2.1.2" +version = "2.2.1" description = "Function decoration for backoff and retry" category = "main" optional = false @@ -357,11 +389,11 @@ lxml = ["lxml"] [[package]] name = "black" -version = "22.8.0" +version = "22.10.0" description = "The uncompromising code formatter." category = "main" optional = false -python-versions = ">=3.6.2" +python-versions = ">=3.7" [package.dependencies] click = ">=8.0.0" @@ -394,18 +426,18 @@ dev = ["Sphinx (==4.3.2)", "black (==22.3.0)", "build (==0.8.0)", "flake8 (==4.0 [[package]] name = "cdshealpix" -version = "0.6.1" -description = "Python cdshealpix package wrapping code of the cdshealpix crate." +version = "0.6.3" +description = "Python cdshealpix package wrapping code of the cdshealpix crate" category = "main" optional = false -python-versions = "*" +python-versions = ">=3.7" [package.dependencies] astropy = "*" [[package]] name = "certifi" -version = "2022.6.15.1" +version = "2022.9.24" description = "Python package for providing Mozilla's CA Bundle." category = "main" optional = false @@ -439,7 +471,7 @@ optional = false python-versions = ">=3.6.0" [package.extras] -unicode_backport = ["unicodedata2"] +unicode-backport = ["unicodedata2"] [[package]] name = "click" @@ -482,15 +514,33 @@ test = ["pytest-cov"] [[package]] name = "colorama" -version = "0.4.5" +version = "0.4.6" description = "Cross-platform colored terminal text." category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" + +[[package]] +name = "contourpy" +version = "1.0.5" +description = "Python library for calculating contours of 2D quadrilateral grids" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +numpy = ">=1.16" + +[package.extras] +bokeh = ["bokeh", "selenium"] +docs = ["docutils (<0.18)", "sphinx", "sphinx-rtd-theme"] +test = ["Pillow", "flake8", "isort", "matplotlib", "pytest"] +test-minimal = ["pytest"] +test-no-codebase = ["Pillow", "matplotlib", "pytest"] [[package]] name = "coverage" -version = "6.4.4" +version = "6.5.0" description = "Code coverage measurement for Python" category = "main" optional = false @@ -527,7 +577,7 @@ python-versions = ">=3.6" cffi = ">=1.12" [package.extras] -docs = ["sphinx (>=1.6.5,!=1.8.0,!=3.1.0,!=3.1.1)", "sphinx-rtd-theme"] +docs = ["sphinx (>=1.6.5,!=1.8.0,!=3.1.0,!=3.1.1)", "sphinx_rtd_theme"] docstest = ["pyenchant (>=1.6.11)", "sphinxcontrib-spelling (>=4.0.1)", "twine (>=1.12.0)"] pep8test = ["black", "flake8", "flake8-import-order", "pep8-naming"] sdist = ["setuptools_rust (>=0.11.4)"] @@ -574,6 +624,22 @@ category = "main" optional = false python-versions = "*" +[[package]] +name = "dnspython" +version = "2.2.1" +description = "DNS toolkit" +category = "main" +optional = false +python-versions = ">=3.6,<4.0" + +[package.extras] +curio = ["curio (>=1.2,<2.0)", "sniffio (>=1.1,<2.0)"] +dnssec = ["cryptography (>=2.6,<37.0)"] +doh = ["h2 (>=4.1.0)", "httpx (>=0.21.1)", "requests (>=2.23.0,<3.0.0)", "requests-toolbelt (>=0.9.1,<0.10.0)"] +idna = ["idna (>=2.1,<4.0)"] +trio = ["trio (>=0.14,<0.20)"] +wmi = ["wmi (>=1.5.1,<2.0.0)"] + [[package]] name = "docopt" version = "0.6.2" @@ -599,16 +665,30 @@ optional = false python-versions = "*" [[package]] -name = "executing" +name = "exceptiongroup" version = "1.0.0" +description = "Backport of PEP 654 (exception groups)" +category = "dev" +optional = false +python-versions = ">=3.7" + +[package.extras] +test = ["pytest (>=6)"] + +[[package]] +name = "executing" +version = "1.1.1" description = "Get the currently executing AST node of a frame, and other information" category = "main" optional = false python-versions = "*" +[package.extras] +tests = ["asttokens", "littleutils", "pytest", "rich"] + [[package]] name = "fastavro" -version = "1.6.1" +version = "1.7.0" description = "Fast read/write of AVRO files" category = "main" optional = false @@ -622,7 +702,7 @@ zstandard = ["zstandard"] [[package]] name = "fastjsonschema" -version = "2.16.1" +version = "2.16.2" description = "Fastest Python implementation of JSON schema" category = "main" optional = false @@ -645,7 +725,7 @@ testing = ["covdefaults (>=2.2)", "coverage (>=6.4.2)", "pytest (>=7.1.2)", "pyt [[package]] name = "fiona" -version = "1.8.21" +version = "1.8.22" description = "Fiona reads and writes spatial data files" category = "main" optional = false @@ -658,6 +738,7 @@ click = ">=4.0" click-plugins = ">=1.0" cligj = ">=0.5" munch = "*" +setuptools = "*" six = ">=1.7" [package.extras] @@ -668,7 +749,7 @@ test = ["boto3 (>=1.2.4)", "mock", "pytest (>=3)", "pytest-cov"] [[package]] name = "fonttools" -version = "4.37.1" +version = "4.38.0" description = "Tools to manipulate font files" category = "main" optional = false @@ -793,7 +874,7 @@ lxml = ["lxml"] [[package]] name = "identify" -version = "2.5.5" +version = "2.5.8" description = "File identification library for Python" category = "main" optional = false @@ -804,12 +885,31 @@ license = ["ukkonen"] [[package]] name = "idna" -version = "3.3" +version = "3.4" description = "Internationalized Domain Names in Applications (IDNA)" category = "main" optional = false python-versions = ">=3.5" +[[package]] +name = "igwn-auth-utils" +version = "0.3.1" +description = "Authorisation utilities for IGWN" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +cryptography = ">=2.3" +requests = ">=2.14" +safe-netrc = ">=1.0.0" +scitokens = ">=1.7.0" + +[package.extras] +docs = ["sphinx (>=4.0.0)", "sphinx-immaterial-igwn"] +lint = ["flake8 (>=3.7.0)", "flake8-bandit"] +test = ["pytest (>=3.9.1)", "pytest-cov", "requests (>=2.14)", "requests-mock", "safe-netrc (>=1.0.0)"] + [[package]] name = "iniconfig" version = "1.1.1" @@ -820,7 +920,7 @@ python-versions = "*" [[package]] name = "ipykernel" -version = "6.15.2" +version = "6.16.2" description = "IPython Kernel for Jupyter" category = "main" optional = false @@ -840,7 +940,8 @@ tornado = ">=6.1" traitlets = ">=5.1.0" [package.extras] -test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=6.0)", "pytest-cov", "pytest-timeout"] +docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinxcontrib-github-alt"] +test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-cov", "pytest-timeout"] [[package]] name = "ipython" @@ -875,7 +976,7 @@ notebook = ["ipywidgets", "notebook"] parallel = ["ipyparallel"] qtconsole = ["qtconsole"] test = ["pytest (<7.1)", "pytest-asyncio", "testpath"] -test_extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.19)", "pandas", "pytest (<7.1)", "pytest-asyncio", "testpath", "trio"] +test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.19)", "pandas", "pytest (<7.1)", "pytest-asyncio", "testpath", "trio"] [[package]] name = "ipython-genutils" @@ -904,8 +1005,8 @@ widgetsnbextension = ">=4.0,<5.0" test = ["jsonschema", "pytest (>=3.6.0)", "pytest-cov", "pytz"] [[package]] -name = "jaraco.classes" -version = "3.2.2" +name = "jaraco-classes" +version = "3.2.3" description = "Utility functions for Python class constructs" category = "main" optional = false @@ -915,8 +1016,8 @@ python-versions = ">=3.7" more-itertools = "*" [package.extras] -docs = ["jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx"] -testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] +docs = ["jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"] +testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] [[package]] name = "jedi" @@ -943,7 +1044,7 @@ python-versions = ">=3.7" [package.extras] test = ["async-timeout", "pytest", "pytest-asyncio (>=0.17)", "pytest-trio", "testpath", "trio"] -trio = ["async-generator", "trio"] +trio = ["async_generator", "trio"] [[package]] name = "jinja2" @@ -961,11 +1062,11 @@ i18n = ["Babel (>=2.7)"] [[package]] name = "joblib" -version = "1.1.0" +version = "1.2.0" description = "Lightweight pipelining with Python functions" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "jsonschema" @@ -1001,7 +1102,7 @@ qtconsole = "*" [[package]] name = "jupyter-client" -version = "7.3.5" +version = "7.4.4" description = "Jupyter protocol implementation and client libraries" category = "main" optional = false @@ -1018,7 +1119,7 @@ traitlets = "*" [package.extras] doc = ["ipykernel", "myst-parser", "sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] -test = ["codecov", "coverage", "ipykernel (>=6.5)", "ipython", "mypy", "pre-commit", "pytest", "pytest-asyncio (>=0.18)", "pytest-cov", "pytest-timeout"] +test = ["codecov", "coverage", "ipykernel (>=6.12)", "ipython", "mypy", "pre-commit", "pytest", "pytest-asyncio (>=0.18)", "pytest-cov", "pytest-timeout"] [[package]] name = "jupyter-console" @@ -1040,7 +1141,7 @@ test = ["pexpect"] [[package]] name = "jupyter-core" -version = "4.11.1" +version = "4.11.2" description = "Jupyter core package. A base package on which Jupyter projects rely." category = "main" optional = false @@ -1053,6 +1154,35 @@ traitlets = "*" [package.extras] test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] +[[package]] +name = "jupyter-server" +version = "1.21.0" +description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications." +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +anyio = ">=3.1.0,<4" +argon2-cffi = "*" +jinja2 = "*" +jupyter-client = ">=6.1.12" +jupyter-core = ">=4.7.0" +nbconvert = ">=6.4.4" +nbformat = ">=5.2.0" +packaging = "*" +prometheus-client = "*" +pywinpty = {version = "*", markers = "os_name == \"nt\""} +pyzmq = ">=17" +Send2Trash = "*" +terminado = ">=0.8.3" +tornado = ">=6.1.0" +traitlets = ">=5.1" +websocket-client = "*" + +[package.extras] +test = ["coverage", "ipykernel", "pre-commit", "pytest (>=7.0)", "pytest-console-scripts", "pytest-cov", "pytest-mock", "pytest-timeout", "pytest-tornasync", "requests"] + [[package]] name = "jupyterlab-pygments" version = "0.2.2" @@ -1071,7 +1201,7 @@ python-versions = ">=3.7" [[package]] name = "keyring" -version = "23.9.1" +version = "23.9.3" description = "Store and access your passwords safely." category = "main" optional = false @@ -1097,7 +1227,7 @@ python-versions = ">=3.7" [[package]] name = "lalsuite" -version = "7.8" +version = "7.10" description = "LIGO Scientific Collaboration Algorithm Library - minimal Python package" category = "main" optional = false @@ -1125,13 +1255,13 @@ optional = false python-versions = "*" [package.extras] -atomic_cache = ["atomicwrites"] +atomic-cache = ["atomicwrites"] nearley = ["js2py"] regex = ["regex"] [[package]] name = "ligo-gracedb" -version = "2.7.8" +version = "2.8.0" description = "A Python package for accessing the GraceDB API." category = "main" optional = false @@ -1140,7 +1270,9 @@ python-versions = "*" [package.dependencies] cryptography = ">=1.7.2,<=36.0.2" future = ">=0.15.0" +igwn-auth-utils = ">=0.3.1" requests = ">=2.6.0" +safe-netrc = ">=1.0.0" six = ">=1.9.0" [[package]] @@ -1155,8 +1287,8 @@ python-versions = "*" six = "*" [[package]] -name = "ligo.skymap" -version = "1.0.2" +name = "ligo-skymap" +version = "1.0.3" description = "Tools for reading, writing, manipulating, and making LIGO and Virgo sky maps" category = "main" optional = false @@ -1171,7 +1303,7 @@ healpy = "*" lalsuite = ">=6.82,<7.2 || >7.2" ligo-gracedb = ">=2.0.1" ligo-segments = ">=1.2.0" -matplotlib = ">=3.4.0" +matplotlib = ">=3.5.0" networkx = "*" numpy = ">=1.19.3,<1.22.0 || >1.22.0" pillow = ">=2.5.0" @@ -1212,7 +1344,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*" [package.extras] cssselect = ["cssselect (>=0.7)"] html5 = ["html5lib"] -htmlsoup = ["beautifulsoup4"] +htmlsoup = ["BeautifulSoup4"] source = ["Cython (>=0.29.7)"] [[package]] @@ -1225,22 +1357,23 @@ python-versions = ">=3.7" [[package]] name = "matplotlib" -version = "3.5.3" +version = "3.6.1" description = "Python plotting package" category = "main" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] +contourpy = ">=1.0.1" cycler = ">=0.10" fonttools = ">=4.22.0" kiwisolver = ">=1.0.1" -numpy = ">=1.17" +numpy = ">=1.19" packaging = ">=20.0" pillow = ">=6.2.0" pyparsing = ">=2.2.1" python-dateutil = ">=2.7" -setuptools_scm = ">=4,<7" +setuptools_scm = ">=7" [[package]] name = "matplotlib-inline" @@ -1278,11 +1411,11 @@ networkx = "*" [[package]] name = "more-itertools" -version = "8.14.0" +version = "9.0.0" description = "More routines for operating on iterables, beyond itertools" category = "main" optional = false -python-versions = ">=3.5" +python-versions = ">=3.7" [[package]] name = "multidict" @@ -1323,9 +1456,41 @@ category = "main" optional = false python-versions = "*" +[[package]] +name = "nbclassic" +version = "0.4.5" +description = "A web-based notebook environment for interactive computing" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +argon2-cffi = "*" +ipykernel = "*" +ipython-genutils = "*" +jinja2 = "*" +jupyter-client = ">=6.1.1" +jupyter-core = ">=4.6.1" +jupyter-server = ">=1.8" +nbconvert = ">=5" +nbformat = "*" +nest-asyncio = ">=1.5" +notebook-shim = ">=0.1.0" +prometheus-client = "*" +pyzmq = ">=17" +Send2Trash = ">=1.8.0" +terminado = ">=0.8.3" +tornado = ">=6.1" +traitlets = ">=4.2.1" + +[package.extras] +docs = ["myst-parser", "nbsphinx", "sphinx", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] +json-logging = ["json-logging"] +test = ["coverage", "nbval", "pytest", "pytest-cov", "pytest-tornasync", "requests", "requests-unixsocket", "selenium (==4.1.5)", "testpath"] + [[package]] name = "nbclient" -version = "0.6.8" +version = "0.7.0" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." category = "main" optional = false @@ -1343,7 +1508,7 @@ test = ["black", "check-manifest", "flake8", "ipykernel", "ipython", "ipywidgets [[package]] name = "nbconvert" -version = "7.0.0" +version = "7.2.3" description = "Converting Jupyter Notebooks" category = "main" optional = false @@ -1356,7 +1521,6 @@ defusedxml = "*" jinja2 = ">=3.0" jupyter-core = ">=4.7" jupyterlab-pygments = "*" -lxml = "*" markupsafe = ">=2.0" mistune = ">=2.0.3,<3" nbclient = ">=0.5.0" @@ -1368,8 +1532,8 @@ tinycss2 = "*" traitlets = ">=5.0" [package.extras] -all = ["ipykernel", "ipython", "ipywidgets (>=7)", "nbsphinx (>=0.2.12)", "pre-commit", "pyppeteer (>=1,<1.1)", "pyqtwebengine (>=5.15)", "pytest", "pytest-cov", "pytest-dependency", "sphinx (==5.0.2)", "sphinx-rtd-theme", "tornado (>=6.1)"] -docs = ["ipython", "nbsphinx (>=0.2.12)", "sphinx (==5.0.2)", "sphinx-rtd-theme"] +all = ["ipykernel", "ipython", "ipywidgets (>=7)", "myst-parser", "nbsphinx (>=0.2.12)", "pre-commit", "pyppeteer (>=1,<1.1)", "pyqtwebengine (>=5.15)", "pytest", "pytest-cov", "pytest-dependency", "sphinx (==5.0.2)", "sphinx-rtd-theme", "tornado (>=6.1)"] +docs = ["ipython", "myst-parser", "nbsphinx (>=0.2.12)", "sphinx (==5.0.2)", "sphinx-rtd-theme"] qtpdf = ["pyqtwebengine (>=5.15)"] qtpng = ["pyqtwebengine (>=5.15)"] serve = ["tornado (>=6.1)"] @@ -1378,7 +1542,7 @@ webpdf = ["pyppeteer (>=1,<1.1)"] [[package]] name = "nbformat" -version = "5.4.0" +version = "5.7.0" description = "The Jupyter Notebook format" category = "main" optional = false @@ -1391,11 +1555,11 @@ jupyter-core = "*" traitlets = ">=5.1" [package.extras] -test = ["check-manifest", "pre-commit", "pytest", "testpath"] +test = ["check-manifest", "pep440", "pre-commit", "pytest", "testpath"] [[package]] name = "nest-asyncio" -version = "1.5.5" +version = "1.5.6" description = "Patch asyncio to allow nested event loops" category = "main" optional = false @@ -1403,7 +1567,7 @@ python-versions = ">=3.5" [[package]] name = "networkx" -version = "2.8.6" +version = "2.8.7" description = "Python package for creating and manipulating graphs and networks" category = "main" optional = false @@ -1411,7 +1575,7 @@ python-versions = ">=3.8" [package.extras] default = ["matplotlib (>=3.4)", "numpy (>=1.19)", "pandas (>=1.3)", "scipy (>=1.8)"] -developer = ["mypy (>=0.961)", "pre-commit (>=2.20)"] +developer = ["mypy (>=0.981)", "pre-commit (>=2.20)"] doc = ["nb2plots (>=0.6)", "numpydoc (>=1.4)", "pillow (>=9.1)", "pydata-sphinx-theme (>=0.9)", "sphinx (>=5)", "sphinx-gallery (>=0.10)", "texext (>=0.6.6)"] extra = ["lxml (>=4.6)", "pydot (>=1.4.2)", "pygraphviz (>=1.9)", "sympy (>=1.10)"] test = ["codecov (>=2.1)", "pytest (>=7.1)", "pytest-cov (>=3.0)"] @@ -1424,9 +1588,12 @@ category = "main" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*" +[package.dependencies] +setuptools = "*" + [[package]] name = "notebook" -version = "6.4.12" +version = "6.5.1" description = "A web-based notebook environment for interactive computing" category = "main" optional = false @@ -1439,6 +1606,7 @@ ipython-genutils = "*" jinja2 = "*" jupyter-client = ">=5.3.4" jupyter-core = ">=4.6.1" +nbclassic = "0.4.5" nbconvert = ">=5" nbformat = "*" nest-asyncio = ">=1.5" @@ -1452,11 +1620,25 @@ traitlets = ">=4.2.1" [package.extras] docs = ["myst-parser", "nbsphinx", "sphinx", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] json-logging = ["json-logging"] -test = ["coverage", "nbval", "pytest", "pytest-cov", "requests", "requests-unixsocket", "selenium", "testpath"] +test = ["coverage", "nbval", "pytest", "pytest-cov", "requests", "requests-unixsocket", "selenium (==4.1.5)", "testpath"] + +[[package]] +name = "notebook-shim" +version = "0.2.0" +description = "A shim layer for notebook traits and config" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.dependencies] +jupyter-server = ">=1.8,<3" + +[package.extras] +test = ["pytest", "pytest-console-scripts", "pytest-tornasync"] [[package]] name = "numpy" -version = "1.23.3" +version = "1.23.4" description = "NumPy is the fundamental package for array computing with Python." category = "main" optional = false @@ -1475,7 +1657,7 @@ pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" [[package]] name = "pandas" -version = "1.4.4" +version = "1.5.1" description = "Powerful data structures for data analysis, time series, and statistics" category = "main" optional = false @@ -1612,7 +1794,7 @@ wcwidth = "*" [[package]] name = "psutil" -version = "5.9.2" +version = "5.9.3" description = "Cross-platform lib for process and system monitoring in Python." category = "main" optional = false @@ -1621,6 +1803,14 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [package.extras] test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"] +[[package]] +name = "psycopg2" +version = "2.9.5" +description = "psycopg2 - Python-PostgreSQL Database Adapter" +category = "main" +optional = false +python-versions = ">=3.6" + [[package]] name = "ptemcee" version = "1.0.0" @@ -1716,21 +1906,37 @@ python-versions = ">=3.6" [package.extras] plugins = ["importlib-metadata"] +[[package]] +name = "pyjwt" +version = "2.6.0" +description = "JSON Web Token implementation in Python" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.extras] +crypto = ["cryptography (>=3.4.0)"] +dev = ["coverage[toml] (==5.0.4)", "cryptography (>=3.4.0)", "pre-commit", "pytest (>=6.0.0,<7.0.0)", "sphinx (>=4.5.0,<5.0.0)", "sphinx-rtd-theme", "zope.interface"] +docs = ["sphinx (>=4.5.0,<5.0.0)", "sphinx-rtd-theme", "zope.interface"] +tests = ["coverage[toml] (==5.0.4)", "pytest (>=6.0.0,<7.0.0)"] + [[package]] name = "pymongo" -version = "4.2.0" +version = "4.3.2" description = "Python driver for MongoDB " category = "main" optional = false python-versions = ">=3.7" +[package.dependencies] +dnspython = ">=1.16.0,<3.0.0" + [package.extras] aws = ["pymongo-auth-aws (<2.0.0)"] encryption = ["pymongocrypt (>=1.3.0,<2.0.0)"] gssapi = ["pykerberos"] ocsp = ["certifi", "pyopenssl (>=17.2.0)", "requests (<3.0.0)", "service-identity (>=18.1.0)"] snappy = ["python-snappy"] -srv = ["dnspython (>=1.16.0,<3.0.0)"] zstd = ["zstandard"] [[package]] @@ -1788,7 +1994,7 @@ python-versions = ">=3.6, <4" [[package]] name = "pytest" -version = "7.1.3" +version = "7.2.0" description = "pytest: simple powerful testing with Python" category = "dev" optional = false @@ -1797,11 +2003,11 @@ python-versions = ">=3.7" [package.dependencies] attrs = ">=19.2.0" colorama = {version = "*", markers = "sys_platform == \"win32\""} +exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""} iniconfig = "*" packaging = "*" pluggy = ">=0.12,<2.0" -py = ">=1.8.2" -tomli = ">=1.0.0" +tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""} [package.extras] testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"] @@ -1836,7 +2042,7 @@ tqdm = "*" [[package]] name = "pytz" -version = "2022.2.1" +version = "2022.5" description = "World timezone definitions, modern and historical" category = "main" optional = false @@ -1844,20 +2050,20 @@ python-versions = "*" [[package]] name = "pyvo" -version = "1.3" +version = "1.4" description = "Astropy affiliated package for accessing Virtual Observatory data and services" category = "main" optional = false python-versions = ">=3.8" [package.dependencies] -astropy = ">=4.0" +astropy = ">=4.1" requests = "*" [package.extras] -all = ["mimeparse"] +all = ["pillow"] docs = ["sphinx-astropy"] -test = ["pytest-astropy"] +test = ["pytest-astropy", "requests-mock"] [[package]] name = "pywin32" @@ -1877,7 +2083,7 @@ python-versions = "*" [[package]] name = "pywinpty" -version = "2.0.7" +version = "2.0.9" description = "Pseudo terminal support for Windows from Python." category = "main" optional = false @@ -1893,7 +2099,7 @@ python-versions = ">=3.6" [[package]] name = "pyzmq" -version = "23.2.1" +version = "24.0.1" description = "Python bindings for 0MQ" category = "main" optional = false @@ -1927,7 +2133,7 @@ test = ["flaky", "pytest", "pytest-qt"] [[package]] name = "qtpy" -version = "2.2.0" +version = "2.2.1" description = "Provides an abstraction layer on top of the various Qt bindings (PyQt5/6 and PySide2/6)." category = "main" optional = false @@ -1974,7 +2180,7 @@ urllib3 = ">=1.21.1,<1.27" [package.extras] socks = ["PySocks (>=1.5.6,!=1.5.7)"] -use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"] +use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] [[package]] name = "requests-toolbelt" @@ -1987,6 +2193,14 @@ python-versions = "*" [package.dependencies] requests = ">=2.0.1,<3.0.0" +[[package]] +name = "safe-netrc" +version = "1.0.0" +description = "Safe netrc file parser" +category = "main" +optional = false +python-versions = "*" + [[package]] name = "schedule" version = "1.1.0" @@ -1997,14 +2211,33 @@ python-versions = ">=3.6" [[package]] name = "scipy" -version = "1.9.1" -description = "SciPy: Scientific Library for Python" +version = "1.9.3" +description = "Fundamental algorithms for scientific computing in Python" category = "main" optional = false -python-versions = ">=3.8,<3.12" +python-versions = ">=3.8" [package.dependencies] -numpy = ">=1.18.5,<1.25.0" +numpy = ">=1.18.5,<1.26.0" + +[package.extras] +dev = ["flake8", "mypy", "pycodestyle", "typing_extensions"] +doc = ["matplotlib (>2)", "numpydoc", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-panels (>=0.5.2)", "sphinx-tabs"] +test = ["asv", "gmpy2", "mpmath", "pytest", "pytest-cov", "pytest-xdist", "scikit-umfpack", "threadpoolctl"] + +[[package]] +name = "scitokens" +version = "1.7.2" +description = "SciToken reference implementation library" +category = "main" +optional = false +python-versions = ">=3.5" + +[package.dependencies] +cryptography = "*" +PyJWT = ">=1.6.1" +setuptools = "*" +six = "*" [[package]] name = "seaborn" @@ -2041,21 +2274,36 @@ optional = false python-versions = "*" [package.extras] -nativelib = ["pyobjc-framework-cocoa", "pywin32"] -objc = ["pyobjc-framework-cocoa"] +nativelib = ["pyobjc-framework-Cocoa", "pywin32"] +objc = ["pyobjc-framework-Cocoa"] win32 = ["pywin32"] +[[package]] +name = "setuptools" +version = "65.5.0" +description = "Easily download, build, install, upgrade, and uninstall Python packages" +category = "main" +optional = false +python-versions = ">=3.7" + +[package.extras] +docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"] +testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8 (<5)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mock", "pip (>=19.1)", "pip-run (>=8.8)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"] +testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"] + [[package]] name = "setuptools-scm" -version = "6.4.2" +version = "7.0.5" description = "the blessed package to manage your versions by scm tags" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] packaging = ">=20.0" +setuptools = "*" tomli = ">=1.0.0" +typing-extensions = "*" [package.extras] test = ["pytest (>=6.2)", "virtualenv (>20)"] @@ -2063,7 +2311,7 @@ toml = ["setuptools (>=42)"] [[package]] name = "shapely" -version = "1.8.4" +version = "1.8.5.post1" description = "Geometric objects, predicates, and operations" category = "main" optional = false @@ -2093,6 +2341,14 @@ python-versions = "*" [package.dependencies] pycryptodome = "*" +[[package]] +name = "sniffio" +version = "1.3.0" +description = "Sniff out which async library your code is running under" +category = "main" +optional = false +python-versions = ">=3.7" + [[package]] name = "soupsieve" version = "2.3.2.post1" @@ -2101,9 +2357,29 @@ category = "main" optional = false python-versions = ">=3.6" +[[package]] +name = "sqlalchemy" +version = "1.3.24" +description = "Database Abstraction Library" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.extras] +mssql = ["pyodbc"] +mssql-pymssql = ["pymssql"] +mssql-pyodbc = ["pyodbc"] +mysql = ["mysqlclient"] +oracle = ["cx_oracle"] +postgresql = ["psycopg2"] +postgresql-pg8000 = ["pg8000 (<1.16.6)"] +postgresql-psycopg2binary = ["psycopg2-binary"] +postgresql-psycopg2cffi = ["psycopg2cffi"] +pymysql = ["pymysql", "pymysql (<1)"] + [[package]] name = "stack-data" -version = "0.5.0" +version = "0.5.1" description = "Extract data from python stack frames and tracebacks for informative displays" category = "main" optional = false @@ -2119,7 +2395,7 @@ tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"] [[package]] name = "terminado" -version = "0.15.0" +version = "0.17.0" description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library." category = "main" optional = false @@ -2131,22 +2407,23 @@ pywinpty = {version = ">=1.1.0", markers = "os_name == \"nt\""} tornado = ">=6.1.0" [package.extras] -test = ["pre-commit", "pytest (>=6.0)", "pytest-timeout"] +docs = ["pydata-sphinx-theme", "sphinx"] +test = ["pre-commit", "pytest (>=7.0)", "pytest-timeout"] [[package]] name = "tinycss2" -version = "1.1.1" +version = "1.2.1" description = "A tiny CSS parser" category = "main" optional = false -python-versions = 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