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provide a way to specify a genome list independent of the genbank gather #9

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ctb opened this issue Nov 7, 2020 · 1 comment · Fixed by #130
Closed

provide a way to specify a genome list independent of the genbank gather #9

ctb opened this issue Nov 7, 2020 · 1 comment · Fixed by #130

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@ctb
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ctb commented Nov 7, 2020

(and then run gather on those genomes to get the order)

@ctb
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ctb commented Nov 7, 2020

e.g., could do something like this:

config-.yml:

[<sample>]
ref_genomes:
- A
- B
- C

if you want to override.

also provide a CLI that lets you just download a genome by accession

and/or figure out how to divorce accession gathering from gather.csv as much as possible.

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