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[WIP] explore all overlapping genomes, not just minimum metagenome cover #124

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[WIP] explore all overlapping genomes, not just minimum metagenome cover #124

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Commits on Dec 21, 2021

  1. begin explore prefetch results

    @ctb
    ctb committed Dec 21, 2021
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  2. add map_prefetch

    @ctb
    ctb committed Dec 21, 2021
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Commits on Dec 30, 2021

  1. Merge branch 'latest' into explore/strain

    @ctb
    ctb committed Dec 30, 2021
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Commits on Jan 1, 2022

  1. start counting snps in vcf

    @ctb
    ctb committed Jan 1, 2022
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  2. Merge branch 'latest' of github.com:dib-lab/genome-grist into explore… 

    …/strain
    @ctb
    ctb committed Jan 1, 2022
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  3. refactor prefetch rule as in #128

    @ctb
    ctb committed Jan 1, 2022
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  4. add VCF parsing and summary into summarize_mapping

    @ctb
    ctb committed Jan 1, 2022
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  5. Merge branch 'latest' of github.com:dib-lab/genome-grist into explore… 

    …/strain
    @ctb
    ctb committed Jan 1, 2022
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  6. add prefetch info to transfer

    @ctb
    ctb committed Jan 1, 2022
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  7. fix bcf -> vcf

    @ctb
    ctb committed Jan 1, 2022
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  8. add figure for num snps

    @ctb
    ctb committed Jan 1, 2022
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  9. add prefetch_select option to config file

    @ctb
    ctb committed Jan 1, 2022
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Commits on Jan 2, 2022

  1. add normalized variants per Mbp - reconsidering tho

    @ctb
    ctb committed Jan 2, 2022
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Commits on Jan 17, 2022

  1. Merge branch 'latest' of github.com:dib-lab/genome-grist into explore… 

    …/strain
    @ctb
    ctb committed Jan 17, 2022
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  2. fixed a few more things

    @ctb
    ctb committed Jan 17, 2022
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  3. make error message clear, at least

    @ctb
    ctb committed Jan 17, 2022
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Commits on Jan 18, 2022

  1. cleanup and debug

    @ctb
    ctb committed Jan 18, 2022
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Commits on Jan 27, 2022

  1. add comment

    @ctb
    ctb committed Jan 27, 2022
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Commits on Feb 15, 2022

  1. steal VCF code from #124

    @ctb
    ctb committed Feb 15, 2022
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  2. Merge branch 'add/vcf' into explore/strain

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    ctb committed Feb 15, 2022
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Commits on Feb 16, 2022

  1. Merge branch 'latest' of github.com:dib-lab/genome-grist into explore… 

    …/strain
    @ctb
    ctb committed Feb 16, 2022
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