train_net.py

# Copyright (c) Facebook, Inc. and its affiliates. All Rights Reserved
"""
MaskFormer Training Script.

This script is a simplified version of the training script in detectron2/tools.
"""
import copy
import itertools
import logging
import os
from collections import OrderedDict
from typing import Any, Dict, List, Set

import torch

import detectron2.utils.comm as comm
from detectron2.checkpoint import DetectionCheckpointer
from detectron2.config import get_cfg
from detectron2.data import MetadataCatalog, build_detection_train_loader
from detectron2.engine import DefaultTrainer, default_argument_parser, default_setup, launch
from detectron2.evaluation import CityscapesInstanceEvaluator, CityscapesSemSegEvaluator, \
    COCOEvaluator, COCOPanopticEvaluator, DatasetEvaluators, SemSegEvaluator, verify_results, \
    DatasetEvaluator

from detectron2.projects.deeplab import add_deeplab_config, build_lr_scheduler
from detectron2.solver.build import maybe_add_gradient_clipping
from detectron2.utils.logger import setup_logger

from detectron2.utils.file_io import PathManager
import numpy as np
from PIL import Image
import glob

import pycocotools.mask as mask_util

from detectron2.data import DatasetCatalog, MetadataCatalog
from detectron2.utils.comm import all_gather, is_main_process, synchronize
import json

# from detectron2.evaluation import SemSegGzeroEvaluator
# from mask_former.evaluation.sem_seg_evaluation_gzero import SemSegGzeroEvaluator

class SemSegGzeroEvaluator(DatasetEvaluator):
    """
    Evaluate semantic segmentation metrics.
    """

    def __init__(
        self, dataset_name,
        distributed=True,
        output_dir=None,
        *,
        num_classes=None,
        ignore_label=None,
    ):
        """
        Args:
            dataset_name (str): name of the dataset to be evaluated.
            distributed (True): if True, will collect results from all ranks for evaluation.
                Otherwise, will evaluate the results in the current process.
            output_dir (str): an output directory to dump results.
            num_classes, ignore_label: deprecated argument
        """
        self._logger = logging.getLogger(__name__)
        if num_classes is not None:
            self._logger.warn(
                "SemSegEvaluator(num_classes) is deprecated! It should be obtained from metadata."
            )
        if ignore_label is not None:
            self._logger.warn(
                "SemSegEvaluator(ignore_label) is deprecated! It should be obtained from metadata."
            )
        self._dataset_name = dataset_name
        self._distributed = distributed
        self._output_dir = output_dir

        self._cpu_device = torch.device("cpu")

        self.input_file_to_gt_file = {
            dataset_record["file_name"]: dataset_record["sem_seg_file_name"]
            for dataset_record in DatasetCatalog.get(dataset_name)
        }

        meta = MetadataCatalog.get(dataset_name)
        # Dict that maps contiguous training ids to COCO category ids
        try:
            c2d = meta.stuff_dataset_id_to_contiguous_id
            self._contiguous_id_to_dataset_id = {v: k for k, v in c2d.items()}
        except AttributeError:
            self._contiguous_id_to_dataset_id = None
        self._class_names = meta.stuff_classes
        self._val_extra_classes = meta.val_extra_classes
        self._num_classes = len(meta.stuff_classes)
        if num_classes is not None:
            assert self._num_classes == num_classes, f"{self._num_classes} != {num_classes}"
        self._ignore_label = ignore_label if ignore_label is not None else meta.ignore_label

    def reset(self):
        self._conf_matrix = np.zeros((self._num_classes + 1, self._num_classes + 1), dtype=np.int64)
        self._predictions = []

    def process(self, inputs, outputs):
        """
        Args:
            inputs: the inputs to a model.
                It is a list of dicts. Each dict corresponds to an image and
                contains keys like "height", "width", "file_name".
            outputs: the outputs of a model. It is either list of semantic segmentation predictions
                (Tensor [H, W]) or list of dicts with key "sem_seg" that contains semantic
                segmentation prediction in the same format.
        """
        for input, output in zip(inputs, outputs):
            output = output["sem_seg"].argmax(dim=0).to(self._cpu_device)
            pred = np.array(output, dtype=np.int)
            with PathManager.open(self.input_file_to_gt_file[input["file_name"]], "rb") as f:
                gt = np.array(Image.open(f), dtype=np.int)

            gt[gt == self._ignore_label] = self._num_classes

            self._conf_matrix += np.bincount(
                (self._num_classes + 1) * pred.reshape(-1) + gt.reshape(-1),
                minlength=self._conf_matrix.size,
            ).reshape(self._conf_matrix.shape)

            self._predictions.extend(self.encode_json_sem_seg(pred, input["file_name"]))

    def evaluate(self):
        """
        Evaluates standard semantic segmentation metrics (http://cocodataset.org/#stuff-eval):

        * Mean intersection-over-union averaged across classes (mIoU)
        * Frequency Weighted IoU (fwIoU)
        * Mean pixel accuracy averaged across classes (mACC)
        * Pixel Accuracy (pACC)
        """
        if self._distributed:
            synchronize()
            conf_matrix_list = all_gather(self._conf_matrix)
            self._predictions = all_gather(self._predictions)
            self._predictions = list(itertools.chain(*self._predictions))
            if not is_main_process():
                return

            self._conf_matrix = np.zeros_like(self._conf_matrix)
            for conf_matrix in conf_matrix_list:
                self._conf_matrix += conf_matrix

        if self._output_dir:
            PathManager.mkdirs(self._output_dir)
            file_path = os.path.join(self._output_dir, "sem_seg_predictions.json")
            with PathManager.open(file_path, "w") as f:
                f.write(json.dumps(self._predictions))

        acc = np.full(self._num_classes, np.nan, dtype=np.float)
        iou = np.full(self._num_classes, np.nan, dtype=np.float)
        tp = self._conf_matrix.diagonal()[:-1].astype(np.float)
        pos_gt = np.sum(self._conf_matrix[:-1, :-1], axis=0).astype(np.float)
        class_weights = pos_gt / np.sum(pos_gt)
        pos_pred = np.sum(self._conf_matrix[:-1, :-1], axis=1).astype(np.float)
        acc_valid = pos_gt > 0
        acc[acc_valid] = tp[acc_valid] / pos_gt[acc_valid]
        iou_valid = (pos_gt + pos_pred) > 0
        union = pos_gt + pos_pred - tp
        iou[acc_valid] = tp[acc_valid] / union[acc_valid]
        macc = np.sum(acc[acc_valid]) / np.sum(acc_valid)
        miou = np.sum(iou[acc_valid]) / np.sum(iou_valid)
        fiou = np.sum(iou[acc_valid] * class_weights[acc_valid])
        pacc = np.sum(tp) / np.sum(pos_gt)
        seen_IoU = 0
        unseen_IoU = 0
        seen_acc = 0
        unseen_acc = 0
        res = {}
        res_unseen = {}
        res["mIoU"] = 100 * miou
        res["fwIoU"] = 100 * fiou
        for i, name in enumerate(self._class_names):
            res["IoU-{}".format(name)] = 100 * iou[i]
            if name in self._val_extra_classes:
                unseen_IoU = unseen_IoU + 100 * iou[i]
                res_unseen["IoU-{}".format(name)] = 100 * iou[i]
            else:
                seen_IoU = seen_IoU + 100 * iou[i]
        assert len(res_unseen) == len(self._val_extra_classes)
        unseen_IoU = unseen_IoU / len(self._val_extra_classes)
        seen_IoU = seen_IoU / (self._num_classes - len(self._val_extra_classes))
        res["mACC"] = 100 * macc
        res["pACC"] = 100 * pacc
        for i, name in enumerate(self._class_names):
            res["ACC-{}".format(name)] = 100 * acc[i]
            if name in self._val_extra_classes:
                unseen_acc = unseen_acc + 100 * iou[i]
            else:
                seen_acc = seen_acc + 100 * iou[i]
        unseen_acc = unseen_acc / len(self._val_extra_classes)
        seen_acc = seen_acc / (self._num_classes - len(self._val_extra_classes))
        res["seen_IoU"] = seen_IoU
        res["unseen_IoU"] = unseen_IoU
        res["harmonic mean"] = 2 * seen_IoU * unseen_IoU / (seen_IoU + unseen_IoU)
        # res["unseen_acc"] = unseen_acc
        # res["seen_acc"] = seen_acc
        if self._output_dir:
            file_path = os.path.join(self._output_dir, "sem_seg_evaluation.pth")
            with PathManager.open(file_path, "wb") as f:
                torch.save(res, f)
        results = OrderedDict({"sem_seg": res})
        self._logger.info(results)
        print("results: ", results)
        print('len unseen results:', len(res_unseen))
        print("unseen results: ", res_unseen)
        return results

    def encode_json_sem_seg(self, sem_seg, input_file_name):
        """
        Convert semantic segmentation to COCO stuff format with segments encoded as RLEs.
        See http://cocodataset.org/#format-results
        """
        json_list = []
        for label in np.unique(sem_seg):
            if self._contiguous_id_to_dataset_id is not None:
                assert (
                    label in self._contiguous_id_to_dataset_id
                ), "Label {} is not in the metadata info for {}".format(label, self._dataset_name)
                dataset_id = self._contiguous_id_to_dataset_id[label]
            else:
                dataset_id = int(label)
            mask = (sem_seg == label).astype(np.uint8)
            mask_rle = mask_util.encode(np.array(mask[:, :, None], order="F"))[0]
            mask_rle["counts"] = mask_rle["counts"].decode("utf-8")
            json_list.append(
                {"file_name": input_file_name, "category_id": dataset_id, "segmentation": mask_rle}
            )
        return json_list


# MaskFormer
from mask_former import (
    DETRPanopticDatasetMapper,
    MaskFormerPanopticDatasetMapper,
    MaskFormerSemanticDatasetMapper,
    SemanticSegmentorWithTTA,
    add_mask_former_config,
)


class Trainer(DefaultTrainer):
    """
    Extension of the Trainer class adapted to DETR.
    """

    @classmethod
    def build_evaluator(cls, cfg, dataset_name, output_folder=None):
        """
        Create evaluator(s) for a given dataset.
        This uses the special metadata "evaluator_type" associated with each
        builtin dataset. For your own dataset, you can simply create an
        evaluator manually in your script and do not have to worry about the
        hacky if-else logic here.
        """
        if output_folder is None:
            output_folder = os.path.join(cfg.OUTPUT_DIR, "inference")
        evaluator_list = []
        evaluator_type = MetadataCatalog.get(dataset_name).evaluator_type
        if evaluator_type in ["sem_seg", "ade20k_panoptic_seg"]:
            evaluator_list.append(
                SemSegEvaluator(
                    dataset_name,
                    distributed=True,
                    output_dir=output_folder,
                )
            )
        # import pdb; pdb.set_trace()
        if evaluator_type == "sem_seg_gzero":

            evaluator_list.append(
                SemSegGzeroEvaluator(
                    dataset_name,
                    distributed=True,
                    output_dir=output_folder,
                )
            )
        if evaluator_type == "coco":
            evaluator_list.append(COCOEvaluator(dataset_name, output_dir=output_folder))
        if evaluator_type in [
            "coco_panoptic_seg",
            "ade20k_panoptic_seg",
            "cityscapes_panoptic_seg",
        ]:
            evaluator_list.append(COCOPanopticEvaluator(dataset_name, output_folder))
        if evaluator_type == "cityscapes_instance":
            assert (
                torch.cuda.device_count() >= comm.get_rank()
            ), "CityscapesEvaluator currently do not work with multiple machines."
            return CityscapesInstanceEvaluator(dataset_name)
        if evaluator_type == "cityscapes_sem_seg":
            assert (
                torch.cuda.device_count() >= comm.get_rank()
            ), "CityscapesEvaluator currently do not work with multiple machines."
            return CityscapesSemSegEvaluator(dataset_name)
        if evaluator_type == "cityscapes_panoptic_seg":
            assert (
                torch.cuda.device_count() >= comm.get_rank()
            ), "CityscapesEvaluator currently do not work with multiple machines."
            evaluator_list.append(CityscapesSemSegEvaluator(dataset_name))
        if len(evaluator_list) == 0:
            raise NotImplementedError(
                "no Evaluator for the dataset {} with the type {}".format(
                    dataset_name, evaluator_type
                )
            )
        elif len(evaluator_list) == 1:
            return evaluator_list[0]
        return DatasetEvaluators(evaluator_list)

    @classmethod
    def build_train_loader(cls, cfg):
        # Semantic segmentation dataset mapper
        if cfg.INPUT.DATASET_MAPPER_NAME == "mask_former_semantic":
            mapper = MaskFormerSemanticDatasetMapper(cfg, True)
        # Panoptic segmentation dataset mapper
        elif cfg.INPUT.DATASET_MAPPER_NAME == "mask_former_panoptic":
            mapper = MaskFormerPanopticDatasetMapper(cfg, True)
        # DETR-style dataset mapper for COCO panoptic segmentation
        elif cfg.INPUT.DATASET_MAPPER_NAME == "detr_panoptic":
            mapper = DETRPanopticDatasetMapper(cfg, True)
        else:
            mapper = None
        return build_detection_train_loader(cfg, mapper=mapper)

    @classmethod
    def build_lr_scheduler(cls, cfg, optimizer):
        """
        It now calls :func:`detectron2.solver.build_lr_scheduler`.
        Overwrite it if you'd like a different scheduler.
        """
        return build_lr_scheduler(cfg, optimizer)

    @classmethod
    def build_optimizer(cls, cfg, model):
        weight_decay_norm = cfg.SOLVER.WEIGHT_DECAY_NORM
        weight_decay_embed = cfg.SOLVER.WEIGHT_DECAY_EMBED

        defaults = {}
        defaults["lr"] = cfg.SOLVER.BASE_LR
        defaults["weight_decay"] = cfg.SOLVER.WEIGHT_DECAY

        norm_module_types = (
            torch.nn.BatchNorm1d,
            torch.nn.BatchNorm2d,
            torch.nn.BatchNorm3d,
            torch.nn.SyncBatchNorm,
            # NaiveSyncBatchNorm inherits from BatchNorm2d
            torch.nn.GroupNorm,
            torch.nn.InstanceNorm1d,
            torch.nn.InstanceNorm2d,
            torch.nn.InstanceNorm3d,
            torch.nn.LayerNorm,
            torch.nn.LocalResponseNorm,
        )

        params: List[Dict[str, Any]] = []
        memo: Set[torch.nn.parameter.Parameter] = set()
        # import ipdb;
        # ipdb.set_trace()
        for module_name, module in model.named_modules():
            for module_param_name, value in module.named_parameters(recurse=False):
                if not value.requires_grad:
                    continue
                # Avoid duplicating parameters
                if value in memo:
                    continue
                memo.add(value)
                hyperparams = copy.copy(defaults)
                if "backbone" in module_name:
                    hyperparams["lr"] = hyperparams["lr"] * cfg.SOLVER.BACKBONE_MULTIPLIER
                # for deformable detr
                if ("reference_points" in module_name) or ("sampling_offsets" in module_name):
                    # sorry, hard coded
                    # import ipdb;
                    # ipdb.set_trace()
                    hyperparams["lr"] = hyperparams["lr"] * 0.1

                if ("semantic_query" in module_name):
                    # import ipdb; ipdb.set_trace()
                    hyperparams["lr"] = hyperparams["lr"] * cfg.MODEL.MASK_FORMER.SEMANTIC_QUERY_MULTIPLIER
                # if ("bg_feature" in module_name):
                #     import ipdb;
                #     ipdb.set_trace()
                if (
                    "relative_position_bias_table" in module_param_name
                    or "absolute_pos_embed" in module_param_name
                ):
                    print(module_param_name)
                    hyperparams["weight_decay"] = 0.0
                if isinstance(module, norm_module_types):
                    hyperparams["weight_decay"] = weight_decay_norm
                if isinstance(module, torch.nn.Embedding):
                    hyperparams["weight_decay"] = weight_decay_embed
                params.append({"params": [value], **hyperparams})

        def maybe_add_full_model_gradient_clipping(optim):
            # detectron2 doesn't have full model gradient clipping now
            clip_norm_val = cfg.SOLVER.CLIP_GRADIENTS.CLIP_VALUE
            enable = (
                cfg.SOLVER.CLIP_GRADIENTS.ENABLED
                and cfg.SOLVER.CLIP_GRADIENTS.CLIP_TYPE == "full_model"
                and clip_norm_val > 0.0
            )

            class FullModelGradientClippingOptimizer(optim):
                def step(self, closure=None):
                    all_params = itertools.chain(*[x["params"] for x in self.param_groups])
                    torch.nn.utils.clip_grad_norm_(all_params, clip_norm_val)
                    super().step(closure=closure)

            return FullModelGradientClippingOptimizer if enable else optim

        optimizer_type = cfg.SOLVER.OPTIMIZER
        if optimizer_type == "SGD":
            optimizer = maybe_add_full_model_gradient_clipping(torch.optim.SGD)(
                params, cfg.SOLVER.BASE_LR, momentum=cfg.SOLVER.MOMENTUM
            )
        elif optimizer_type == "ADAMW":
            optimizer = maybe_add_full_model_gradient_clipping(torch.optim.AdamW)(
                params, cfg.SOLVER.BASE_LR
            )
        else:
            raise NotImplementedError(f"no optimizer type {optimizer_type}")
        if not cfg.SOLVER.CLIP_GRADIENTS.CLIP_TYPE == "full_model":
            optimizer = maybe_add_gradient_clipping(cfg, optimizer)
        return optimizer

    @classmethod
    def test_with_TTA(cls, cfg, model):
        logger = logging.getLogger("detectron2.trainer")
        # In the end of training, run an evaluation with TTA.
        logger.info("Running inference with test-time augmentation ...")
        model = SemanticSegmentorWithTTA(cfg, model)
        evaluators = [
            cls.build_evaluator(
                cfg, name, output_folder=os.path.join(cfg.OUTPUT_DIR, "inference_TTA")
            )
            for name in cfg.DATASETS.TEST
        ]
        res = cls.test(cfg, model, evaluators)
        res = OrderedDict({k + "_TTA": v for k, v in res.items()})
        return res


def setup(args):
    """
    Create configs and perform basic setups.
    """
    cfg = get_cfg()
    # for poly lr schedule
    add_deeplab_config(cfg)
    add_mask_former_config(cfg)
    cfg.merge_from_file(args.config_file)
    cfg.merge_from_list(args.opts)
    cfg.freeze()
    default_setup(cfg, args)
    # Setup logger for "mask_former" module
    setup_logger(output=cfg.OUTPUT_DIR, distributed_rank=comm.get_rank(), name="mask_former")
    return cfg


def main(args):
    cfg = setup(args)

    if args.eval_only:
        model = Trainer.build_model(cfg)
        DetectionCheckpointer(model, save_dir=cfg.OUTPUT_DIR).resume_or_load(
            cfg.MODEL.WEIGHTS, resume=args.resume
        )
        res = Trainer.test(cfg, model)
        if cfg.TEST.AUG.ENABLED:
            res.update(Trainer.test_with_TTA(cfg, model))
        if comm.is_main_process():
            verify_results(cfg, res)
        return res

    trainer = Trainer(cfg)
    trainer.resume_or_load(resume=args.resume)
    return trainer.train()


if __name__ == "__main__":
    args = default_argument_parser().parse_args()
    print("Command Line Args:", args)
    launch(
        main,
        args.num_gpus,
        num_machines=args.num_machines,
        machine_rank=args.machine_rank,
        dist_url=args.dist_url,
        args=(args,),
    )