NER finetuning - checkpoint problem

[zampierimatteo91]

Hi all,
Sorry to bother you with stupid mistakes.

I am trying to fine-tune the NER model to later run a prediction on a dataset I have.
I am trying to run the fine-tuning on a dataset I have, formatted as the ones you provided.
I downloaded the biobert_v1.1_pubmed model, but it doesn't contain any model.ckpt per se; instead, there are model.ckpt-1000000.meta, model.ckpt-1000000.index, and model.ckpt-1000000.data-00000-of-00001.

Using one of those gives error though.

Thanks

[ManousogiannisM]

Hi,

Based on tensorflow/models#2676 (comment) ,
using just model.ckpt (without .index or -1000000.meta) worked for me.

[zampierimatteo91]

Hi @ManousogiannisM ,

Thanks for the reply!

Using model.ckpt-1000000 worked fine!
I now have to solve just the usage of tensorflow-gpu :p

Thanks again and good day

[AndreasSaka]

@zampierimatteo91

I am trying to run the fine-tuning on a dataset I have, formatted as the ones you provided.

can you elaborate on how you performed this task ?