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pip install fails when install 0.90, gcc-7, macOS 10.15 #4925

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zerobeanny opened this issue Oct 9, 2019 · 2 comments
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pip install fails when install 0.90, gcc-7, macOS 10.15 #4925

zerobeanny opened this issue Oct 9, 2019 · 2 comments

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@zerobeanny
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zerobeanny commented Oct 9, 2019 •
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++ pwd

  • oldpath=/Users/zerobeanny/Downloads/xgboost-0.90
  • cd ./xgboost/
  • echo darwin19
  • grep -q darwin
  • LIB_XGBOOST=libxgboost.dylib
  • which g++-5
  • which g++-7
    /usr/local/bin/g++-7
  • export CC=gcc-7
  • CC=gcc-7
  • export CXX=g++-7
  • CXX=g++-7
  • make clean
    Makefile:31: MAKE [/Library/Developer/CommandLineTools/usr/bin/make] - checked OK
    rm -f -rf build build_plugin lib bin *~ /~ //*~ ///~ /.o //.o ///*.o #xgboost
    rm -f -rf build_tests *.gcov tests/cpp/xgboost_test
    if [ -d "R-package/src" ]; then
    cd R-package/src;
    rm -f -rf rabit src include dmlc-core amalgamation *.so *.dll;
    cd /Users/zerobeanny/Downloads/xgboost-0.90/xgboost;
    fi
  • make lib/libxgboost.dylib -j4
    Makefile:31: MAKE [/Library/Developer/CommandLineTools/usr/bin/make] - checked OK
    g++-7 -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/learner.o src/learner.cc >build/learner.d
    g++-7 -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/logging.o src/logging.cc >build/logging.d
    g++-7 -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/c_api/c_api.o src/c_api/c_api.cc >build/c_api/c_api.d
    g++-7 -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp -MM -MT build/c_api/c_api_error.o src/c_api/c_api_error.cc >build/c_api/c_api_error.d
    g++-7 -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/c_api/c_api_error.cc -o build/c_api/c_api_error.o
    In file included from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/bits/postypes.h:40:0,
    from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/bits/char_traits.h:40,
    from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/string:40,
    from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/stdexcept:39,
    from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/array:39,
    from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/tuple:39,
    from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/mutex:38,
    from dmlc-core/include/dmlc/thread_local.h:9,
    from src/c_api/c_api_error.cc:6:
    /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/cwchar:44:10: fatal error: wchar.h: No such file or directory
    #include <wchar.h>
    ^~~~~~~~~
    compilation terminated.
    make: *** [build/c_api/c_api_error.o] Error 1
    make: *** Waiting for unfinished jobs....
    g++-7 -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/logging.cc -o build/logging.o
    g++-7 -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/c_api/c_api.cc -o build/c_api/c_api.o
    g++-7 -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -fopenmp src/learner.cc -o build/learner.o
    In file included from include/xgboost/data.h:10:0,
    from src/c_api/c_api.cc:3:
    dmlc-core/include/dmlc/base.h:190:10: fatal error: sys/types.h: No such file or directory
    #include <sys/types.h>
    ^In file included from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/bits/postypes.h:40:0,
    from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/bits/char_traits.h:40,
    from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/string:40,
    from rabit/include/rabit/rabit.h:13,
    from src/logging.cc:7:
    /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/cwchar:44:10: fatal error: wchar.h: No such file or directory
    #include <wchar.h>
    ^~~~~~~~~
compilation terminated.
compilation terminated.
make: *** [build/c_api/c_api.o] Error 1
make: *** [build/logging.o] Error 1
In file included from dmlc-core/include/dmlc/io.h:8:0,
                 from src/learner.cc:7:
/usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/cstdio:42:10: fatal error: stdio.h: No such file or directory
 #include <stdio.h>
          ^~~~~~~~~
compilation terminated.
make: *** [build/learner.o] Error 1
+ echo -----------------------------
-----------------------------
+ echo 'Building multi-thread xgboost failed'
Building multi-thread xgboost failed
+ echo 'Start to build single-thread xgboost'
Start to build single-thread xgboost
+ make clean
Makefile:31: MAKE [/Library/Developer/CommandLineTools/usr/bin/make] - checked OK
rm -f -rf build build_plugin lib bin *~ */*~ */*/*~ */*/*/*~ */*.o */*/*.o */*/*/*.o #xgboost
rm -f -rf build_tests *.gcov tests/cpp/xgboost_test
if [ -d "R-package/src" ]; then \
                cd R-package/src; \
                rm -f -rf rabit src include dmlc-core amalgamation *.so *.dll; \
                cd /Users/zerobeanny/Downloads/xgboost-0.90/xgboost; \
        fi
+ make lib/libxgboost.dylib -j4 USE_OPENMP=0
Makefile:31: MAKE [/Library/Developer/CommandLineTools/usr/bin/make] - checked OK
g++-7 -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude   -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -DDISABLE_OPENMP -MM -MT build/learner.o src/learner.cc >build/learner.d
g++-7 -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude   -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -DDISABLE_OPENMP -MM -MT build/logging.o src/logging.cc >build/logging.d
g++-7 -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude   -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -DDISABLE_OPENMP -MM -MT build/c_api/c_api.o src/c_api/c_api.cc >build/c_api/c_api.d
g++-7 -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude   -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -DDISABLE_OPENMP -MM -MT build/c_api/c_api_error.o src/c_api/c_api_error.cc >build/c_api/c_api_error.d
g++-7 -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude   -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -DDISABLE_OPENMP src/c_api/c_api_error.cc -o build/c_api/c_api_error.o
In file included from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/bits/postypes.h:40:0,
                 from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/bits/char_traits.h:40,
                 from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/string:40,
                 from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/stdexcept:39,
                 from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/array:39,
                 from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/tuple:39,
                 from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/mutex:38,
                 from dmlc-core/include/dmlc/thread_local.h:9,
                 from src/c_api/c_api_error.cc:6:
/usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/cwchar:44:10: fatal error: wchar.h: No such file or directory
 #include <wchar.h>
          ^~~~~~~~~
compilation terminated.
make: *** [build/c_api/c_api_error.o] Error 1
make: *** Waiting for unfinished jobs....
g++-7 -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude   -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -DDISABLE_OPENMP src/logging.cc -o build/logging.o
g++-7 -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude   -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -DDISABLE_OPENMP src/c_api/c_api.cc -o build/c_api/c_api.o
g++-7 -c -DDMLC_LOG_CUSTOMIZE=1 -std=c++11 -Wall -Wno-unknown-pragmas -Iinclude   -Idmlc-core/include -Irabit/include -I/include -O3 -funroll-loops -msse2 -fPIC -DDISABLE_OPENMP src/learner.cc -o build/learner.o
In file included from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/bits/postypes.h:40:0,
                 from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/bits/char_traits.h:40,
                 from /usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/string:40,
                 from rabit/include/rabit/rabit.h:13,
                 from src/logging.cc:7:
/usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/cwchar:44:10: fatal error: wchar.h: No such file or directory
 #include <wchar.h>
          ^~~~~~~~~
In file included from include/xgboost/data.h:10:0,
                 from src/c_api/c_api.cc:3:
dmlc-core/include/dmlc/base.h:190:10: fatal error: sys/types.h: No such file or directory
 #include <sys/types.h>
          ^~~~~~~~~~~~~
In file included from dmlc-core/include/dmlc/io.h:8:0,
                 from src/learner.cc:7:
/usr/local/Cellar/gcc/7.2.0/include/c++/7.2.0/cstdio:42:10: fatal error: stdio.h: No such file or directory
 #include <stdio.h>
          ^~~~~~~~~
compilation terminated.
compilation terminated.
compilation terminated.
make: *** [build/learner.o] Error 1
make: *** [build/c_api/c_api.o] Error 1
make: *** [build/logging.o] Error 1
Traceback (most recent call last):
  File "setup.py", line 42, in <module>
    LIB_PATH = libpath['find_lib_path']()
  File "xgboost/libpath.py", line 48, in find_lib_path
    'List of candidates:\n' + ('\n'.join(dll_path)))
XGBoostLibraryNotFound: Cannot find XGBoost Library in the candidate path, did you install compilers and run build.sh in root path?
List of candidates:
/Users/zerobeanny/Downloads/xgboost-0.90/xgboost/libxgboost.dylib
/Users/zerobeanny/Downloads/xgboost-0.90/xgboost/../../lib/libxgboost.dylib
/Users/zerobeanny/Downloads/xgboost-0.90/xgboost/./lib/libxgboost.dylib


**and i have tried 
CFLAGS="-I$(xcrun --show-sdk-path)/usr/include" pip install xgboost
it just gave me the same error mesg.just like  $(xcrun --show-sdk-path) didn't work
any ideas?**
ps in macos 10.15,there is no  /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg
@zerobeanny
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and i have tried
CFLAGS="-I$(xcrun --show-sdk-path)/usr/include" pip install xgboost
it just gave me the same error mesg.just like $(xcrun --show-sdk-path) didn't work
any ideas?
ps in macos 10.15,there is no /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg

@hcho3
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hcho3 commented Oct 15, 2019

Take a look at #4949 (comment)

@hcho3 hcho3 closed this as completed Oct 15, 2019
@lock lock bot locked as resolved and limited conversation to collaborators Jan 13, 2020
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@hcho3 @zerobeanny