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php:7.4-fpm-alpine3.14 can't install pdo_mysql #1172

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iloveleon19 opened this issue Jun 27, 2021 · 11 comments
Closed

php:7.4-fpm-alpine3.14 can't install pdo_mysql #1172

iloveleon19 opened this issue Jun 27, 2021 · 11 comments

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@iloveleon19
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iloveleon19 commented Jun 27, 2021 •
edited
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My docker file

FROM php:7.4-fpm-alpine3.14
# FROM php:7.4-fpm-alpine # also get an error
# FROM php:7.4-fpm-alpine3.13 # success build

RUN apk add --update --no-cache \
    php7-pdo_mysql

RUN docker-php-ext-install pdo_mysql
RUN docker-php-ext-enable pdo_mysql

get error message

#6 20.05 /bin/sh /usr/src/php/ext/pdo_mysql/libtool --mode=compile cc -I/usr/local/include/php/ext -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/pdo_mysql -DPHP_ATOM_INC -I/usr/src/php/ext/pdo_mysql/include -I/usr/src/php/ext/pdo_mysql/main -I/usr/src/php/ext/pdo_mysql -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_CONFIG_H -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c /usr/src/php/ext/pdo_mysql/pdo_mysql.c -o pdo_mysql.lo
#6 20.05 make: /bin/sh: Operation not permitted
#6 20.05 make: *** [Makefile:193: pdo_mysql.lo] Error 127
@hakuno
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hakuno commented Jun 28, 2021

It may be enough. Check it out:

FROM php:7.4-fpm-alpine3.14
RUN docker-php-ext-install pdo_mysql

@iloveleon19
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iloveleon19 commented Jun 28, 2021 •
edited
Loading

It may be enough. Check it out:

FROM php:7.4-fpm-alpine3.14
RUN docker-php-ext-install pdo_mysql

I tried it, and get the same error message.

#5 20.84 /bin/sh /usr/src/php/ext/pdo_mysql/libtool --mode=compile cc -I/usr/local/include/php/ext -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/pdo_mysql -DPHP_ATOM_INC -I/usr/src/php/ext/pdo_mysql/include -I/usr/src/php/ext/pdo_mysql/main -I/usr/src/php/ext/pdo_mysql -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_CONFIG_H -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c /usr/src/php/ext/pdo_mysql/pdo_mysql.c -o pdo_mysql.lo
#5 20.84 make: /bin/sh: Operation not permitted
#5 20.84 make: *** [Makefile:193: pdo_mysql.lo] Error 127

executor failed running [/bin/sh -c docker-php-ext-install pdo_mysql]: exit code: 2

@samjmarshall
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Experiencing the same issue with the PHP 8.x images, not that my input really helps much more :)

Working

FROM php:8.0.7-fpm-alpine3.13
RUN docker-php-ext-install pdo_mysql

Not Working

FROM php:8.0.7-fpm-alpine3.14
RUN docker-php-ext-install pdo_mysql

@lupo112
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lupo112 commented Jun 28, 2021

Same issue with bcmath:

configure.ac:161: the top level
make: /bin/sh: Operation not permitted
make: *** [Makefile:191: bcmath.lo] Error 127

@msaktor
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msaktor commented Jun 28, 2021

Same issue with php7.3 and php_intl

Step 19/39 : FROM php:7.3-fpm-alpine AS php
...
/bin/sh /usr/src/php/ext/intl/libtool --mode=compile cc   -DU_DEFINE_FALSE_AND_TRUE=1 -Wno-write-strings -D__STDC_LIMIT_MACROS -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/intl -DPHP_ATOM_INC -I/usr/src/php/ext/intl/include -I/usr/src/php/ext/intl/main -I/usr/src/php/ext/intl -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib  -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_CONFIG_H  -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -c /usr/src/php/ext/intl/php_intl.c -o php_intl.lo

make: /bin/sh: Operation not permitted
make: *** [Makefile:194: php_intl.lo] Error 127

@AdrianHL
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AdrianHL commented Jun 28, 2021 •
edited
Loading

If you check the docker log there are warnings above these, first one in our case is

(1/1) Installing .phpize-deps (20210628.081426)
OK: 309 MiB in 95 packages
Configuring for:
PHP Api Version:         20190902
Zend Module Api No:      20190902
Zend Extension Api No:   320190902
configure.ac:18: warning: $as_echo is obsolete; use AS_ECHO(["message"]) instead

and at the very end the pdo_mysql error.

We have temporary "solved" this by using 3.13 image.

The only thing we have found different is that with the newer version this is not upgraded (1/63) Upgrading musl (1.2.2-r0 -> 1.2.2-r1). Instead 3.14 uses 1.2.2-r3.

Please find below the full log

+ umask 000

+ GIT_LFS_SKIP_SMUDGE=1 retry 6 git clone --branch="bugfix/pipeline-error" --depth 50 https://x-token-auth:[email protected]/$BITBUCKET_REPO_FULL_NAME.git $BUILD_DIR
Cloning into '/opt/atlassian/pipelines/agent/build'...

+ git reset --hard 3a2df838a40a155de0fb291870b79bd250dad3f2
HEAD is now at 3a2df83 Use Previous PHP Alpine Image

+ git config user.name bitbucket-pipelines

+ git config user.email [email protected]

+ git config push.default current

+ git config http.${BITBUCKET_GIT_HTTP_ORIGIN}.proxy http://localhost:29418/

+ git remote set-url origin http://bitbucket.org/$BITBUCKET_REPO_FULL_NAME

+ git reflog expire --expire=all --all

+ echo ".bitbucket/pipelines/generated" >> .git/info/exclude

+ chmod 777 $BUILD_DIR

Cache "composer": Downloading
Cache "composer": Downloaded 18.6 MiB in 2 seconds
Cache "composer": Extracting
Cache "composer": Extracted in 0 seconds

Images used:
    build : docker.io/library/php@sha256:3c759e6c1edd18a3a3b3b17bf0a31bb9f452b015d96efc4ca7eeea6f97747c49
+ sh ./bitbucket/php-setup.sh
fetch https://dl-cdn.alpinelinux.org/alpine/v3.14/main/x86_64/APKINDEX.tar.gz
fetch https://dl-cdn.alpinelinux.org/alpine/v3.14/community/x86_64/APKINDEX.tar.gz
v3.14.0-52-g9e173332f7 [https://dl-cdn.alpinelinux.org/alpine/v3.14/main]
v3.14.0-51-g94b97c166e [https://dl-cdn.alpinelinux.org/alpine/v3.14/community]
OK: 14925 distinct packages available
(1/62) Installing m4 (1.4.18-r2)
(2/62) Installing libbz2 (1.0.8-r1)
(3/62) Installing perl (5.32.1-r0)
(4/62) Installing autoconf (2.71-r0)
(5/62) Installing php7-common (7.4.20-r0)
(6/62) Installing pcre2 (10.36-r0)
(7/62) Installing php7 (7.4.20-r0)
(8/62) Installing php7-phar (7.4.20-r0)
(9/62) Installing php7-curl (7.4.20-r0)
(10/62) Installing php7-iconv (7.4.20-r0)
(11/62) Installing php7-json (7.4.20-r0)
(12/62) Installing php7-mbstring (7.4.20-r0)
(13/62) Installing php7-openssl (7.4.20-r0)
(14/62) Installing libzip (1.7.3-r2)
(15/62) Installing php7-zip (7.4.20-r0)
(16/62) Installing composer (2.1.3-r0)
(17/62) Installing dpkg (1.20.9-r0)
(18/62) Installing pkgconf (1.7.4-r0)
(19/62) Installing dpkg-dev (1.20.9-r0)
(20/62) Installing libmagic (5.40-r1)
(21/62) Installing file (5.40-r1)
(22/62) Installing libgcc (10.3.1_git20210424-r2)
(23/62) Installing libstdc++ (10.3.1_git20210424-r2)
(24/62) Installing binutils (2.35.2-r2)
(25/62) Installing libgomp (10.3.1_git20210424-r2)
(26/62) Installing libatomic (10.3.1_git20210424-r2)
(27/62) Installing libgphobos (10.3.1_git20210424-r2)
(28/62) Installing gmp (6.2.1-r0)
(29/62) Installing isl22 (0.22-r0)
(30/62) Installing mpfr4 (4.1.0-r0)
(31/62) Installing mpc1 (1.2.1-r0)
(32/62) Installing gcc (10.3.1_git20210424-r2)
(33/62) Installing musl-dev (1.2.2-r3)
(34/62) Installing libc-dev (0.7.2-r3)
(35/62) Installing g++ (10.3.1_git20210424-r2)
(36/62) Installing musl-obstack (1.2.2-r0)
(37/62) Installing libucontext (1.1-r0)
(38/62) Installing gcompat (1.0.0-r2)
(39/62) Installing expat (2.4.1-r0)
(40/62) Installing git (2.32.0-r0)
(41/62) Installing perl-error (0.17029-r1)
(42/62) Installing perl-git (2.32.0-r0)
(43/62) Installing git-perl (2.32.0-r0)
(44/62) Installing libgmpxx (6.2.1-r0)
(45/62) Installing gmp-dev (6.2.1-r0)
(46/62) Installing icu-libs (67.1-r2)
(47/62) Installing icu (67.1-r2)
(48/62) Installing icu-dev (67.1-r2)
(49/62) Installing libc6-compat (1.2.2-r3)
(50/62) Installing gdbm (1.19-r0)
(51/62) Installing libsasl (2.1.27-r12)
(52/62) Installing cyrus-sasl-dev (2.1.27-r12)
(53/62) Installing libmemcached-libs (1.0.18-r4)
(54/62) Installing libmemcached-dev (1.0.18-r4)
(55/62) Installing make (4.3-r0)
(56/62) Installing libevent (2.1.12-r2)
(57/62) Installing libseccomp (2.5.1-r2)
(58/62) Installing memcached (1.6.9-r0)
Executing memcached-1.6.9-r0.pre-install
(59/62) Installing memcached-dev (1.6.9-r0)
(60/62) Installing re2c (2.1.1-r0)
(61/62) Installing unzip (6.0-r9)
(62/62) Installing zlib-dev (1.2.11-r3)
Executing busybox-1.33.1-r2.trigger
OK: 309 MiB in 94 packages
fetch https://dl-cdn.alpinelinux.org/alpine/v3.14/main/x86_64/APKINDEX.tar.gz
fetch https://dl-cdn.alpinelinux.org/alpine/v3.14/community/x86_64/APKINDEX.tar.gz
(1/1) Installing .phpize-deps (20210628.081426)
OK: 309 MiB in 95 packages
Configuring for:
PHP Api Version:         20190902
Zend Module Api No:      20190902
Zend Extension Api No:   320190902
configure.ac:18: warning: $as_echo is obsolete; use AS_ECHO(["message"]) instead
build/php.m4:2110: PHP_CONFIG_NICE is expanded from...
configure.ac:18: the top level
configure.ac:161: warning: The macro `AC_LANG_C' is obsolete.
configure.ac:161: You should run autoupdate.
./lib/autoconf/c.m4:72: AC_LANG_C is expanded from...
build/libtool.m4:2727: _LT_AC_LANG_C_CONFIG is expanded from...
build/libtool.m4:2726: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: The macro `AC_LANG_C' is obsolete.
configure.ac:161: You should run autoupdate.
./lib/autoconf/c.m4:72: AC_LANG_C is expanded from...
lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
build/libtool.m4:561: _LT_AC_LOCK is expanded from...
build/libtool.m4:1184: AC_LIBTOOL_SYS_HARD_LINK_LOCKS is expanded from...
build/libtool.m4:2727: _LT_AC_LANG_C_CONFIG is expanded from...
build/libtool.m4:2726: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:161: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
build/libtool.m4:561: _LT_AC_LOCK is expanded from...
build/libtool.m4:1184: AC_LIBTOOL_SYS_HARD_LINK_LOCKS is expanded from...
build/libtool.m4:2727: _LT_AC_LANG_C_CONFIG is expanded from...
build/libtool.m4:2726: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me:${as_lineno-$LINENO}: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe
build/libtool.m4:1184: AC_LIBTOOL_SYS_HARD_LINK_LOCKS is expanded from...
build/libtool.m4:2727: _LT_AC_LANG_C_CONFIG is expanded from...
build/libtool.m4:2726: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe
build/libtool.m4:1184: AC_LIBTOOL_SYS_HARD_LINK_LOCKS is expanded from...
build/libtool.m4:2727: _LT_AC_LANG_C_CONFIG is expanded from...
build/libtool.m4:2726: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me:${as_lineno-$LINENO}: WARNING: output file \`$ofile' does not exist
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me: WARNING: output file \`$ofile' does not exist
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me:${as_lineno-$LINENO}: WARNING: output file \`$ofile' does not look like a libtool script
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me: WARNING: output file \`$ofile' does not look like a libtool script
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me:${as_lineno-$LINENO}: WARNING: using \`LTCC=$LTCC', extracted from \`$ofile'
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me: WARNING: using \`LTCC=$LTCC', extracted from \`$ofile'
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: tag name \"$tagname\" already exists
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: The macro `AC_LANG_CPLUSPLUS' is obsolete.
configure.ac:161: You should run autoupdate.
./lib/autoconf/c.m4:262: AC_LANG_CPLUSPLUS is expanded from...
build/libtool.m4:2809: _LT_AC_LANG_CXX_CONFIG is expanded from...
build/libtool.m4:2808: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me:${as_lineno-$LINENO}: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe
build/libtool.m4:1184: AC_LIBTOOL_SYS_HARD_LINK_LOCKS is expanded from...
build/libtool.m4:2809: _LT_AC_LANG_CXX_CONFIG is expanded from...
build/libtool.m4:2808: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe
build/libtool.m4:1184: AC_LIBTOOL_SYS_HARD_LINK_LOCKS is expanded from...
build/libtool.m4:2809: _LT_AC_LANG_CXX_CONFIG is expanded from...
build/libtool.m4:2808: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for a sed that does not truncate output... /bin/sed
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for cc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether cc accepts -g... yes
checking for cc option to enable C11 features... none needed
checking how to run the C preprocessor... cc -E
checking for icc... no
checking for suncc... no
checking for system library directory... lib
checking if compiler supports -R... no
checking if compiler supports -Wl,-rpath,... yes
checking build system type... x86_64-pc-linux-musl
checking host system type... x86_64-pc-linux-musl
checking target system type... x86_64-pc-linux-musl
checking for PHP prefix... /usr/local
checking for PHP includes... -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib
checking for PHP extension directory... /usr/local/lib/php/extensions/no-debug-non-zts-20190902
checking for PHP installed headers prefix... /usr/local/include/php
checking if debug is enabled... no
checking if zts is enabled... no
checking for gawk... no
checking for nawk... no
checking for awk... awk
checking if awk is broken... no
checking for MySQL support for PDO... yes, shared
checking for the location of libz... no
checking for MySQL UNIX socket location... 
checking for PDO includes... /usr/local/include/php/ext
checking for a sed that does not truncate output... /bin/sed
checking for ld used by cc... /usr/x86_64-alpine-linux-musl/bin/ld
checking if the linker (/usr/x86_64-alpine-linux-musl/bin/ld) is GNU ld... yes
checking for /usr/x86_64-alpine-linux-musl/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognize dependent libraries... pass_all
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking the maximum length of command line arguments... 98304
checking command to parse /usr/bin/nm -B output from cc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if cc supports -fno-rtti -fno-exceptions... no
checking for cc option to produce PIC... -fPIC
checking if cc PIC flag -fPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking whether the cc linker (/usr/x86_64-alpine-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no

creating libtool
appending configuration tag "CXX" to libtool
configure: patching config.h.in
configure: creating ./config.status
config.status: creating config.h
/bin/sh /usr/src/php/ext/pdo_mysql/libtool --mode=compile cc -I/usr/local/include/php/ext -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/pdo_mysql -DPHP_ATOM_INC -I/usr/src/php/ext/pdo_mysql/include -I/usr/src/php/ext/pdo_mysql/main -I/usr/src/php/ext/pdo_mysql -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib  -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_CONFIG_H  -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -c /usr/src/php/ext/pdo_mysql/pdo_mysql.c -o pdo_mysql.lo 
make: /bin/sh: Operation not permitted
make: *** [Makefile:193: pdo_mysql.lo] Error 127
Skipping cache upload for failed step
Searching for test report files in directories named [test-results, failsafe-reports, test-reports, surefire-reports] down to a depth of 4
Finished scanning for test reports. Found 0 test report files.
Merged test suites, total number tests is 0, with 0 failures and 0 errors.

@AdrianHL
Copy link

Downgrading musl to the same version installed with 3.13 "fixes" the issue (there are still warnings around), see log below (I have cut the log where mysql extension is installed).

We downgrade it adding the following lines:

echo 'http://dl-cdn.alpinelinux.org/alpine/v3.13/main' >> /etc/apk/repositories
apk add 'musl==1.2.2-r1'

Log until mysql extension is installed without error

+ umask 000

+ GIT_LFS_SKIP_SMUDGE=1 retry 6 git clone --branch="bugfix/pipeline-error-reason" --depth 50 https://x-token-auth:[email protected]/$BITBUCKET_REPO_FULL_NAME.git $BUILD_DIR
Cloning into '/opt/atlassian/pipelines/agent/build'...

+ git reset --hard cc8f5dc33c0fdcffc928d9fd97b4ef903a14ed2f
HEAD is now at cc8f5dc Use musl specific version

+ git config user.name bitbucket-pipelines

+ git config user.email [email protected]

+ git config push.default current

+ git config http.${BITBUCKET_GIT_HTTP_ORIGIN}.proxy http://localhost:29418/

+ git remote set-url origin http://bitbucket.org/$BITBUCKET_REPO_FULL_NAME

+ git reflog expire --expire=all --all

+ echo ".bitbucket/pipelines/generated" >> .git/info/exclude

+ chmod 777 $BUILD_DIR

Images used:
    build : docker.io/library/php@sha256:3c759e6c1edd18a3a3b3b17bf0a31bb9f452b015d96efc4ca7eeea6f97747c49
+ sh ./bitbucket/php-setup.sh
fetch https://dl-cdn.alpinelinux.org/alpine/v3.14/main/x86_64/APKINDEX.tar.gz
fetch https://dl-cdn.alpinelinux.org/alpine/v3.14/community/x86_64/APKINDEX.tar.gz
v3.14.0-52-g9e173332f7 [https://dl-cdn.alpinelinux.org/alpine/v3.14/main]
v3.14.0-51-g94b97c166e [https://dl-cdn.alpinelinux.org/alpine/v3.14/community]
OK: 14925 distinct packages available
fetch http://dl-cdn.alpinelinux.org/alpine/v3.13/main/x86_64/APKINDEX.tar.gz
(1/1) Downgrading musl (1.2.2-r3 -> 1.2.2-r1)
OK: 13 MiB in 32 packages
(1/62) Installing m4 (1.4.18-r2)
(2/62) Installing libbz2 (1.0.8-r1)
(3/62) Installing perl (5.32.1-r0)
(4/62) Installing autoconf (2.71-r0)
(5/62) Installing php7-common (7.4.20-r0)
(6/62) Installing pcre2 (10.36-r0)
(7/62) Installing php7 (7.4.20-r0)
(8/62) Installing php7-phar (7.4.20-r0)
(9/62) Installing php7-curl (7.4.20-r0)
(10/62) Installing php7-iconv (7.4.20-r0)
(11/62) Installing php7-json (7.4.20-r0)
(12/62) Installing php7-mbstring (7.4.20-r0)
(13/62) Installing php7-openssl (7.4.20-r0)
(14/62) Installing libzip (1.7.3-r2)
(15/62) Installing php7-zip (7.4.20-r0)
(16/62) Installing composer (2.1.3-r0)
(17/62) Installing dpkg (1.20.9-r0)
(18/62) Installing pkgconf (1.7.4-r0)
(19/62) Installing dpkg-dev (1.20.9-r0)
(20/62) Installing libmagic (5.40-r1)
(21/62) Installing file (5.40-r1)
(22/62) Installing libgcc (10.3.1_git20210424-r2)
(23/62) Installing libstdc++ (10.3.1_git20210424-r2)
(24/62) Installing binutils (2.35.2-r2)
(25/62) Installing libgomp (10.3.1_git20210424-r2)
(26/62) Installing libatomic (10.3.1_git20210424-r2)
(27/62) Installing libgphobos (10.3.1_git20210424-r2)
(28/62) Installing gmp (6.2.1-r0)
(29/62) Installing isl22 (0.22-r0)
(30/62) Installing mpfr4 (4.1.0-r0)
(31/62) Installing mpc1 (1.2.1-r0)
(32/62) Installing gcc (10.3.1_git20210424-r2)
(33/62) Installing musl-dev (1.2.2-r1)
(34/62) Installing libc-dev (0.7.2-r3)
(35/62) Installing g++ (10.3.1_git20210424-r2)
(36/62) Installing musl-obstack (1.2.2-r0)
(37/62) Installing libucontext (1.1-r0)
(38/62) Installing gcompat (1.0.0-r2)
(39/62) Installing expat (2.4.1-r0)
(40/62) Installing git (2.32.0-r0)
(41/62) Installing perl-error (0.17029-r1)
(42/62) Installing perl-git (2.32.0-r0)
(43/62) Installing git-perl (2.32.0-r0)
(44/62) Installing libgmpxx (6.2.1-r0)
(45/62) Installing gmp-dev (6.2.1-r0)
(46/62) Installing icu-libs (67.1-r2)
(47/62) Installing icu (67.1-r2)
(48/62) Installing icu-dev (67.1-r2)
(49/62) Installing libc6-compat (1.2.2-r1)
(50/62) Installing gdbm (1.19-r0)
(51/62) Installing libsasl (2.1.27-r12)
(52/62) Installing cyrus-sasl-dev (2.1.27-r12)
(53/62) Installing libmemcached-libs (1.0.18-r4)
(54/62) Installing libmemcached-dev (1.0.18-r4)
(55/62) Installing make (4.3-r0)
(56/62) Installing libevent (2.1.12-r2)
(57/62) Installing libseccomp (2.5.1-r2)
(58/62) Installing memcached (1.6.9-r0)
Executing memcached-1.6.9-r0.pre-install
(59/62) Installing memcached-dev (1.6.9-r0)
(60/62) Installing re2c (2.1.1-r0)
(61/62) Installing unzip (6.0-r9)
(62/62) Installing zlib-dev (1.2.11-r3)
Executing busybox-1.33.1-r2.trigger
OK: 309 MiB in 94 packages
fetch https://dl-cdn.alpinelinux.org/alpine/v3.14/main/x86_64/APKINDEX.tar.gz
fetch https://dl-cdn.alpinelinux.org/alpine/v3.14/community/x86_64/APKINDEX.tar.gz
fetch http://dl-cdn.alpinelinux.org/alpine/v3.13/main/x86_64/APKINDEX.tar.gz
(1/1) Installing .phpize-deps (20210628.091716)
OK: 309 MiB in 95 packages
Configuring for:
PHP Api Version:         20190902
Zend Module Api No:      20190902
Zend Extension Api No:   320190902
configure.ac:18: warning: $as_echo is obsolete; use AS_ECHO(["message"]) instead
build/php.m4:2110: PHP_CONFIG_NICE is expanded from...
configure.ac:18: the top level
configure.ac:161: warning: The macro `AC_LANG_C' is obsolete.
configure.ac:161: You should run autoupdate.
./lib/autoconf/c.m4:72: AC_LANG_C is expanded from...
build/libtool.m4:2727: _LT_AC_LANG_C_CONFIG is expanded from...
build/libtool.m4:2726: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: The macro `AC_LANG_C' is obsolete.
configure.ac:161: You should run autoupdate.
./lib/autoconf/c.m4:72: AC_LANG_C is expanded from...
lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
build/libtool.m4:561: _LT_AC_LOCK is expanded from...
build/libtool.m4:1184: AC_LIBTOOL_SYS_HARD_LINK_LOCKS is expanded from...
build/libtool.m4:2727: _LT_AC_LANG_C_CONFIG is expanded from...
build/libtool.m4:2726: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: The macro `AC_TRY_LINK' is obsolete.
configure.ac:161: You should run autoupdate.
./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from...
lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from...
lib/m4sugar/m4sh.m4:699: AS_IF is expanded from...
./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from...
./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from...
build/libtool.m4:561: _LT_AC_LOCK is expanded from...
build/libtool.m4:1184: AC_LIBTOOL_SYS_HARD_LINK_LOCKS is expanded from...
build/libtool.m4:2727: _LT_AC_LANG_C_CONFIG is expanded from...
build/libtool.m4:2726: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me:${as_lineno-$LINENO}: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe
build/libtool.m4:1184: AC_LIBTOOL_SYS_HARD_LINK_LOCKS is expanded from...
build/libtool.m4:2727: _LT_AC_LANG_C_CONFIG is expanded from...
build/libtool.m4:2726: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe
build/libtool.m4:1184: AC_LIBTOOL_SYS_HARD_LINK_LOCKS is expanded from...
build/libtool.m4:2727: _LT_AC_LANG_C_CONFIG is expanded from...
build/libtool.m4:2726: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me:${as_lineno-$LINENO}: WARNING: output file \`$ofile' does not exist
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me: WARNING: output file \`$ofile' does not exist
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me:${as_lineno-$LINENO}: WARNING: output file \`$ofile' does not look like a libtool script
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me: WARNING: output file \`$ofile' does not look like a libtool script
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me:${as_lineno-$LINENO}: WARNING: using \`LTCC=$LTCC', extracted from \`$ofile'
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me: WARNING: using \`LTCC=$LTCC', extracted from \`$ofile'
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: tag name \"$tagname\" already exists
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: The macro `AC_LANG_CPLUSPLUS' is obsolete.
configure.ac:161: You should run autoupdate.
./lib/autoconf/c.m4:262: AC_LANG_CPLUSPLUS is expanded from...
build/libtool.m4:2809: _LT_AC_LANG_CXX_CONFIG is expanded from...
build/libtool.m4:2808: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me:${as_lineno-$LINENO}: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe
build/libtool.m4:1184: AC_LIBTOOL_SYS_HARD_LINK_LOCKS is expanded from...
build/libtool.m4:2809: _LT_AC_LANG_CXX_CONFIG is expanded from...
build/libtool.m4:2808: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
configure.ac:161: warning: back quotes and double quotes must not be escaped in: $as_me: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe
build/libtool.m4:1184: AC_LIBTOOL_SYS_HARD_LINK_LOCKS is expanded from...
build/libtool.m4:2809: _LT_AC_LANG_CXX_CONFIG is expanded from...
build/libtool.m4:2808: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
build/libtool.m4:1917: _LT_AC_TAGCONFIG is expanded from...
build/libtool.m4:70: AC_LIBTOOL_SETUP is expanded from...
build/libtool.m4:52: _AC_PROG_LIBTOOL is expanded from...
build/libtool.m4:39: AC_PROG_LIBTOOL is expanded from...
configure.ac:161: the top level
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for a sed that does not truncate output... /bin/sed
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for cc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether cc accepts -g... yes
checking for cc option to enable C11 features... none needed
checking how to run the C preprocessor... cc -E
checking for icc... no
checking for suncc... no
checking for system library directory... lib
checking if compiler supports -R... no
checking if compiler supports -Wl,-rpath,... yes
checking build system type... x86_64-pc-linux-musl
checking host system type... x86_64-pc-linux-musl
checking target system type... x86_64-pc-linux-musl
checking for PHP prefix... /usr/local
checking for PHP includes... -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib
checking for PHP extension directory... /usr/local/lib/php/extensions/no-debug-non-zts-20190902
checking for PHP installed headers prefix... /usr/local/include/php
checking if debug is enabled... no
checking if zts is enabled... no
checking for gawk... no
checking for nawk... no
checking for awk... awk
checking if awk is broken... no
checking for MySQL support for PDO... yes, shared
checking for the location of libz... no
checking for MySQL UNIX socket location... 
checking for PDO includes... /usr/local/include/php/ext
checking for a sed that does not truncate output... /bin/sed
checking for ld used by cc... /usr/x86_64-alpine-linux-musl/bin/ld
checking if the linker (/usr/x86_64-alpine-linux-musl/bin/ld) is GNU ld... yes
checking for /usr/x86_64-alpine-linux-musl/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognize dependent libraries... pass_all
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking the maximum length of command line arguments... 98304
checking command to parse /usr/bin/nm -B output from cc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if cc supports -fno-rtti -fno-exceptions... no
checking for cc option to produce PIC... -fPIC
checking if cc PIC flag -fPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking whether the cc linker (/usr/x86_64-alpine-linux-musl/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no

creating libtool
appending configuration tag "CXX" to libtool
configure: patching config.h.in
configure: creating ./config.status
config.status: creating config.h
/bin/sh /usr/src/php/ext/pdo_mysql/libtool --mode=compile cc -I/usr/local/include/php/ext -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/pdo_mysql -DPHP_ATOM_INC -I/usr/src/php/ext/pdo_mysql/include -I/usr/src/php/ext/pdo_mysql/main -I/usr/src/php/ext/pdo_mysql -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib  -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_CONFIG_H  -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -c /usr/src/php/ext/pdo_mysql/pdo_mysql.c -o pdo_mysql.lo 
/bin/sh /usr/src/php/ext/pdo_mysql/libtool --mode=compile cc -I/usr/local/include/php/ext -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/pdo_mysql -DPHP_ATOM_INC -I/usr/src/php/ext/pdo_mysql/include -I/usr/src/php/ext/pdo_mysql/main -I/usr/src/php/ext/pdo_mysql -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib  -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_CONFIG_H  -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -c /usr/src/php/ext/pdo_mysql/mysql_driver.c -o mysql_driver.lo 
/bin/sh /usr/src/php/ext/pdo_mysql/libtool --mode=compile cc -I/usr/local/include/php/ext -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/pdo_mysql -DPHP_ATOM_INC -I/usr/src/php/ext/pdo_mysql/include -I/usr/src/php/ext/pdo_mysql/main -I/usr/src/php/ext/pdo_mysql -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib  -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_CONFIG_H  -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64   -c /usr/src/php/ext/pdo_mysql/mysql_statement.c -o mysql_statement.lo 
mkdir .libs
mkdir .libs
mkdir: can't create directory '.libs': File exists
 cc -I/usr/local/include/php/ext -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/pdo_mysql -DPHP_ATOM_INC -I/usr/src/php/ext/pdo_mysql/include -I/usr/src/php/ext/pdo_mysql/main -I/usr/src/php/ext/pdo_mysql -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_CONFIG_H -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c /usr/src/php/ext/pdo_mysql/mysql_driver.c  -fPIC -DPIC -o .libs/mysql_driver.o
 cc -I/usr/local/include/php/ext -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/pdo_mysql -DPHP_ATOM_INC -I/usr/src/php/ext/pdo_mysql/include -I/usr/src/php/ext/pdo_mysql/main -I/usr/src/php/ext/pdo_mysql -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_CONFIG_H -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c /usr/src/php/ext/pdo_mysql/pdo_mysql.c  -fPIC -DPIC -o .libs/pdo_mysql.o
 cc -I/usr/local/include/php/ext -DZEND_ENABLE_STATIC_TSRMLS_CACHE=1 -I. -I/usr/src/php/ext/pdo_mysql -DPHP_ATOM_INC -I/usr/src/php/ext/pdo_mysql/include -I/usr/src/php/ext/pdo_mysql/main -I/usr/src/php/ext/pdo_mysql -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_CONFIG_H -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -c /usr/src/php/ext/pdo_mysql/mysql_statement.c  -fPIC -DPIC -o .libs/mysql_statement.o
/bin/sh /usr/src/php/ext/pdo_mysql/libtool --mode=link cc -DPHP_ATOM_INC -I/usr/src/php/ext/pdo_mysql/include -I/usr/src/php/ext/pdo_mysql/main -I/usr/src/php/ext/pdo_mysql -I/usr/local/include/php -I/usr/local/include/php/main -I/usr/local/include/php/TSRM -I/usr/local/include/php/Zend -I/usr/local/include/php/ext -I/usr/local/include/php/ext/date/lib  -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_CONFIG_H  -fstack-protector-strong -fpic -fpie -O2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64  -Wl,-O1 -pie  -o pdo_mysql.la -export-dynamic -avoid-version -prefer-pic -module -rpath /usr/src/php/ext/pdo_mysql/modules  pdo_mysql.lo mysql_driver.lo mysql_statement.lo 
cc -shared  .libs/pdo_mysql.o .libs/mysql_driver.o .libs/mysql_statement.o   -Wl,-O1 -Wl,-soname -Wl,pdo_mysql.so -o .libs/pdo_mysql.so
creating pdo_mysql.la
(cd .libs && rm -f pdo_mysql.la && ln -s ../pdo_mysql.la pdo_mysql.la)
/bin/sh /usr/src/php/ext/pdo_mysql/libtool --mode=install cp ./pdo_mysql.la /usr/src/php/ext/pdo_mysql/modules
cp ./.libs/pdo_mysql.so /usr/src/php/ext/pdo_mysql/modules/pdo_mysql.so
cp ./.libs/pdo_mysql.lai /usr/src/php/ext/pdo_mysql/modules/pdo_mysql.la
PATH="$PATH:/sbin" ldconfig -n /usr/src/php/ext/pdo_mysql/modules
----------------------------------------------------------------------
Libraries have been installed in:
   /usr/src/php/ext/pdo_mysql/modules

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,--rpath -Wl,LIBDIR' linker flag

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------

Build complete.
Don't forget to run 'make test'.

@msaktor
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msaktor commented Jun 28, 2021

Thanks @AdrianHL

I was able to solve my issue by explicitly requesting the 3.13 tag:

FROM php:7.3-fpm-alpine3.13 AS php

@yosifkit
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Looks like you are all running into the exact issue our build servers were hitting last week. If Alpine 3.13 works but Alpine 3.14 fails with an "operation not permitted", then, in this instance, the issue is not the image. You are hitting what opencontainers/runc#2750 fixes, so you need an updated docker; 20.10.4 and above includes the updated runc.

See also #1170 (comment)

@AdrianHL
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Looks like you are all running into the exact issue our build servers were hitting last week. If Alpine 3.13 works but Alpine 3.14 fails with an "operation not permitted", then, in this instance, the issue is not the image. You are hitting what opencontainers/runc#2750 fixes, so you need an updated docker; 20.10.4 and above includes the updated runc.

See also #1170 (comment)

Just checked it and the pipeline is using 19.03.15 client so needs to wait in our case for Bitbucket to update it.

Docker version 19.03.15, build 99e3ed8
Client: Docker Engine - Community
 Version:           19.03.15
 API version:       1.40
 Go version:        go1.13.15
 Git commit:        99e3ed8
 Built:             Sat Jan 30 03:11:43 2021
 OS/Arch:           linux/amd64
 Experimental:      false
Server: Docker Engine - Community
 Engine:
  Version:          20.10.5
  API version:      1.41 (minimum version 1.12)
  Go version:       go1.13.15
  Git commit:       363e9a8
  Built:            Tue Mar  2 20:18:31 2021
  OS/Arch:          linux/amd64
  Experimental:     false
 containerd:
  Version:          v1.4.3
  GitCommit:        269548fa27e0089a8b8278fc4fc781d7f65a939b
 runc:
  Version:          1.0.0-rc93
  GitCommit:        12644e614e25b05da6fd08a38ffa0cfe1903fdec
 docker-init:
  Version:          0.19.0
  GitCommit:        de40ad0

@Yven Yven mentioned this issue Sep 9, 2022
Closed
@VarroReve
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Looks like you are all running into the exact issue our build servers were hitting last week. If Alpine 3.13 works but Alpine 3.14 fails with an "operation not permitted", then, in this instance, the issue is not the image. You are hitting what opencontainers/runc#2750 fixes, so you need an updated docker; 20.10.4 and above includes the updated runc.
See also #1170 (comment)

Just checked it and the pipeline is using 19.03.15 client so needs to wait in our case for Bitbucket to update it.

Docker version 19.03.15, build 99e3ed8
Client: Docker Engine - Community
 Version:           19.03.15
 API version:       1.40
 Go version:        go1.13.15
 Git commit:        99e3ed8
 Built:             Sat Jan 30 03:11:43 2021
 OS/Arch:           linux/amd64
 Experimental:      false
Server: Docker Engine - Community
 Engine:
  Version:          20.10.5
  API version:      1.41 (minimum version 1.12)
  Go version:       go1.13.15
  Git commit:       363e9a8
  Built:            Tue Mar  2 20:18:31 2021
  OS/Arch:          linux/amd64
  Experimental:     false
 containerd:
  Version:          v1.4.3
  GitCommit:        269548fa27e0089a8b8278fc4fc781d7f65a939b
 runc:
  Version:          1.0.0-rc93
  GitCommit:        12644e614e25b05da6fd08a38ffa0cfe1903fdec
 docker-init:
  Version:          0.19.0
  GitCommit:        de40ad0

it solved when I installed runc

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8 participants
@yosifkit @lupo112 @samjmarshall @AdrianHL @hakuno @VarroReve @iloveleon19 @msaktor