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EDAM-bioimaging_dev.owl
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EDAM-bioimaging_dev.owl
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<?xml version="1.0"?>
<!DOCTYPE rdf:RDF [
<!ENTITY foaf "http://xmlns.com/foaf/0.1/" >
<!ENTITY doap "http://usefulinc.com/ns/doap#" >
<!ENTITY owl "http://www.w3.org/2002/07/owl#" >
<!ENTITY oboOther "http://purl.obolibrary.org/obo/" >
<!ENTITY dc "http://purl.org/dc/elements/1.1/" >
<!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
<!ENTITY edam "http://purl.obolibrary.org/obo/edam#" >
<!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
<!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
<!ENTITY oboInOwl "http://www.geneontology.org/formats/oboInOwl#" >
]>
<rdf:RDF xmlns="http://edamontology.org/"
xml:base="http://edamontology.org/"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:oboOther="http://purl.obolibrary.org/obo/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:doap="http://usefulinc.com/ns/doap#"
xmlns:edam="&oboOther;edam#">
<owl:Ontology rdf:about="http://edamontology.org">
<oboOther:idspace>EDAM_topic http://edamontology.org/topic_ "EDAM topics"</oboOther:idspace>
<oboOther:idspace>EDAM_operation http://edamontology.org/operation_ "EDAM operations"</oboOther:idspace>
<oboInOwl:hasSubset>formats "EDAM data formats"</oboInOwl:hasSubset>
<oboOther:default-relationship-id-prefix>EDAM</oboOther:default-relationship-id-prefix>
<oboInOwl:savedBy>Matúš Kalaš</oboInOwl:savedBy>
<oboInOwl:savedBy>Jon Ison</oboInOwl:savedBy>
<oboInOwl:hasSubset>identifiers "EDAM types of identifiers"</oboInOwl:hasSubset>
<oboInOwl:hasSubset>data "EDAM types of data"</oboInOwl:hasSubset>
<oboInOwl:hasSubset>relations "EDAM relations"</oboInOwl:hasSubset>
<oboInOwl:hasSubset>edam "EDAM"</oboInOwl:hasSubset>
<oboInOwl:hasSubset>operations "EDAM_operation"</oboInOwl:hasSubset>
<oboInOwl:hasSubset>bioimaging "EDAM-bioimaging"</oboInOwl:hasSubset>
<oboOther:idspace>EDAM http://edamontology.org/ "EDAM relations and concept properties"</oboOther:idspace>
<dc:format>application/rdf+xml</dc:format>
<oboOther:date>03.03.2020 14:22 UTC</oboOther:date>
<oboOther:idspace>EDAM_data http://edamontology.org/data_ "EDAM types of data"</oboOther:idspace>
<oboInOwl:hasSubset>concept_properties "EDAM concept properties"</oboInOwl:hasSubset>
<dc:creator>Jon Ison</dc:creator>
<dc:contributor>Aaron Ponti</dc:contributor>
<dc:contributor>Petter Ranefall</dc:contributor>
<dc:contributor>Jeremy Pike</dc:contributor>
<dc:contributor>Gabriella Rustici</dc:contributor>
<dc:contributor>Joshua Moore</dc:contributor>
<dc:creator>Hervé Ménager</dc:creator>
<dc:creator>Matúš Kalaš</dc:creator>
<dc:contributor>Alexandre Dufour</dc:contributor>
<dc:creator>Moritz Alexander Kirschmann</dc:creator>
<dc:creator>Anatole Chessel</dc:creator>
<dc:creator>Laure Plantard</dc:creator>
<dc:creator>Joakim Lindblad</dc:creator>
<dc:contributor>Chong Zhang</dc:contributor>
<dc:creator>Nataša Sladoje</dc:creator>
<dc:contributor>Jean-Baptiste Sibarita</dc:contributor>
<dc:contributor>David Rousseau</dc:contributor>
<dc:contributor>Romain Guiet</dc:contributor>
<dc:contributor>Kota Miura</dc:contributor>
<dc:contributor>Lassi Paavolainen</dc:contributor>
<dc:contributor>Ofra Golani</dc:contributor>
<dc:creator>Leandro Aluisio Scholz</dc:creator>
<dc:contributor>Julien Colombelli</dc:contributor>
<dc:contributor>David Hörl</dc:contributor>
<dc:contributor>John Bogovic</dc:contributor>
<dc:creator>Martin Jones</dc:creator>
<dc:contributor>Fabienne Rössler</dc:contributor>
<dc:contributor>Dominic Waithe</dc:contributor>
<dc:contributor>Alban Gaignard</dc:contributor>
<dc:contributor>Florian Levet</dc:contributor>
<dc:contributor>Paula Sampaio</dc:contributor>
<dc:contributor>Sebastian Munck</dc:contributor>
<dc:contributor>Perrine Paul-Gilloteaux</dc:contributor>
<dc:contributor>Marie-Charlotte Domart</dc:contributor>
<dc:contributor>Matthia Karreman</dc:contributor>
<dc:contributor>María Arrate Muñoz-Barrutia</dc:contributor>
<dc:contributor>Raf Van de Plas</dc:contributor>
<dc:contributor>Xavier Heiligenstein</dc:contributor>
<dc:contributor>Ivana Vrhovac Madunić</dc:contributor>
<dc:contributor>Daniel Sage</dc:contributor>
<dc:contributor>Estibaliz Gómez de Mariscal</dc:contributor>
<dc:contributor>Laura Nicolás Sáenz</dc:contributor>
<dc:contributor>Robert Haase</dc:contributor>
<dc:title>EDAM-bioimaging: An ontology of bioimage informatics operations, types of data, data formats, and bioimaging topics</dc:title>
<oboOther:idspace>EDAM_format http://edamontology.org/format_ "EDAM data formats"</oboOther:idspace>
<next_id>!NB.:NO_STABLE_IDS-YET!</next_id>
<oboInOwl:hasSubset>topics "EDAM topics"</oboInOwl:hasSubset>
<oboOther:remark>EDAM-bioimaging is an extension to the EDAM ontology (edamontology.org) for bioimage analysis, bioimage informatics, and bioimaging. It is being developed in collaboration between the ELIXIR research infrastructure and the NEUBIAS and COMULIS COST Actions (neubias.org CA15124, comulis.eu CA17121, funded by the Horizon 2020 Framework Programme of the European Union), in close contact with the Euro-BioImaging research infrastructure (PP2) and the Global BioImaging network.</oboOther:remark>
<doap:Version>alpha06_dev</doap:Version>
<rdfs:isDefinedBy rdf:resource="http://edamontology.org/EDAM-bioimaging.owl"/>
<foaf:page rdf:resource="https://github.com/edamontology/edam-bioimaging"/>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://edamontology.org/citation -->
<owl:AnnotationProperty rdf:about="http://edamontology.org/citation">
<rdfs:label>Citation</rdfs:label>
<oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
<created_in>1.13</created_in>
<oboInOwl:hasBroadSynonym>Publication reference</oboInOwl:hasBroadSynonym>
<oboInOwl:hasRelatedSynonym>Publication</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasDefinition>'Citation' concept property ('citation' metadata tag) contains a dereferenceable URI, preferrably including a DOI, pointing to a citeable publication of the given data format.</oboInOwl:hasDefinition>
<oboOther:is_metadata_tag>true</oboOther:is_metadata_tag>
</owl:AnnotationProperty>
<!-- http://edamontology.org/created_in -->
<owl:AnnotationProperty rdf:about="http://edamontology.org/created_in">
<rdfs:label>Created in</rdfs:label>
<oboInOwl:hasDefinition>Version in which a concept was created.</oboInOwl:hasDefinition>
<oboOther:is_metadata_tag>true</oboOther:is_metadata_tag>
<oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
</owl:AnnotationProperty>
<!-- http://edamontology.org/documentation -->
<owl:AnnotationProperty rdf:about="http://edamontology.org/documentation">
<rdfs:label>Documentation</rdfs:label>
<oboInOwl:hasRelatedSynonym>Specification</oboInOwl:hasRelatedSynonym>
<oboInOwl:hasDefinition>'Documentation' trailing modifier (qualifier, 'documentation') of 'xref' links of 'Format' concepts. When 'true', the link is pointing to a page with explanation, description, documentation, or specification of the given data format.</oboInOwl:hasDefinition>
<oboOther:is_metadata_tag>true</oboOther:is_metadata_tag>
<oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
</owl:AnnotationProperty>
<!-- http://edamontology.org/example -->
<owl:AnnotationProperty rdf:about="http://edamontology.org/example">
<rdfs:label>Example</rdfs:label>
<oboInOwl:hasDefinition>'Example' concept property ('example' metadata tag) lists examples of valid values of types of identifiers (accessions). Applicable to some other types of data, too.</oboInOwl:hasDefinition>
<oboOther:is_metadata_tag>true</oboOther:is_metadata_tag>
<rdfs:comment>Separated by bar ('|').</rdfs:comment>
<oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
</owl:AnnotationProperty>
<!-- http://edamontology.org/file_extension -->
<owl:AnnotationProperty rdf:about="http://edamontology.org/file_extension">
<rdfs:label>File extension</rdfs:label>
<oboInOwl:hasDefinition>'File extension' concept property ('file_extension' metadata tag) lists examples of usual file extensions of formats.</oboInOwl:hasDefinition>
<rdfs:comment>Separated by bar ('|'), without a dot ('.') prefix, preferrably not all capital characters.</rdfs:comment>
<oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
<oboOther:is_metadata_tag>true</oboOther:is_metadata_tag>
</owl:AnnotationProperty>
<!-- http://edamontology.org/hide_in_subset -->
<owl:AnnotationProperty rdf:about="http://edamontology.org/hide_in_subset">
<rdfs:label>Hide in subset</rdfs:label>
<oboInOwl:hasDefinition>'Hide in subset' concept property ('hide_in_subset' metadata tag) is a temporary property in EDAM-bioimaging that declares a subset in which the given concept may (or should) be hidden from users.</oboInOwl:hasDefinition>
<oboOther:is_metadata_tag>true</oboOther:is_metadata_tag>
<rdfs:comment>N.B.: In full mature EDAM, this will be implicit by not including the given concepts in the given subset.
N.B.: In generated subsets, these concepts should be omitted, and their children re-rooted (while omitting unneccessary|uninteresting paths to root!!).</rdfs:comment>
<oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
</owl:AnnotationProperty>
<!-- http://edamontology.org/isdebtag -->
<owl:AnnotationProperty rdf:about="http://edamontology.org/isdebtag">
<rdfs:label>isdebtag</rdfs:label>
<oboInOwl:hasDefinition>When 'true', the term has been proposed or is supported within Debian Med as a tag.</oboInOwl:hasDefinition>
<oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
<oboOther:is_metadata_tag>true</oboOther:is_metadata_tag>
</owl:AnnotationProperty>
<!-- http://edamontology.org/media_type -->
<owl:AnnotationProperty rdf:about="http://edamontology.org/media_type">
<rdfs:label>Media type</rdfs:label>
<oboInOwl:hasNarrowSynonym>MIME type</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasDefinition>'Media type' trailing modifier (qualifier, 'media_type') of 'xref' links of 'Format' concepts. When 'true', the link is pointing to a page specifying a media type of the given data format.</oboInOwl:hasDefinition>
<oboOther:is_metadata_tag>true</oboOther:is_metadata_tag>
<oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
</owl:AnnotationProperty>
<!-- http://edamontology.org/noClue -->
<owl:AnnotationProperty rdf:about="http://edamontology.org/noClue"/>
<!-- http://edamontology.org/obsolete_since -->
<owl:AnnotationProperty rdf:about="http://edamontology.org/obsolete_since">
<rdfs:label>Obsolete since</rdfs:label>
<oboOther:is_metadata_tag>true</oboOther:is_metadata_tag>
<oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
<oboInOwl:hasDefinition>Version in which a concept was made obsolete.</oboInOwl:hasDefinition>
</owl:AnnotationProperty>
<!-- http://edamontology.org/regex -->
<owl:AnnotationProperty rdf:about="http://edamontology.org/regex">
<rdfs:label>Regular expression</rdfs:label>
<oboInOwl:hasDefinition>'Regular expression' concept property ('regex' metadata tag) specifies the allowed values of types of identifiers (accessions). Applicable to some other types of data, too.</oboInOwl:hasDefinition>
<oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
<oboOther:is_metadata_tag>true</oboOther:is_metadata_tag>
</owl:AnnotationProperty>
<!-- http://edamontology.org/related_term -->
<owl:AnnotationProperty rdf:about="http://edamontology.org/related_term">
<rdfs:label>Related term</rdfs:label>
<rdfs:subPropertyOf rdf:resource="&oboInOwl;hasRelatedSynonym"/>
<oboInOwl:hasDefinition>'Related term' concept property ('related_term'; supposedly a synonym modifier in OBO format) states a related term - not necessarily closely semantically related - that an uninformed user may use when searching for the given concept.</oboInOwl:hasDefinition>
<oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/is_anti_symmetric -->
<owl:AnnotationProperty rdf:about="&oboOther;is_anti_symmetric"/>
<!-- http://purl.obolibrary.org/obo/is_metadata_tag -->
<owl:AnnotationProperty rdf:about="&oboOther;is_metadata_tag"/>
<!-- http://purl.obolibrary.org/obo/is_reflexive -->
<owl:AnnotationProperty rdf:about="&oboOther;is_reflexive"/>
<!-- http://purl.obolibrary.org/obo/is_symmetric -->
<owl:AnnotationProperty rdf:about="&oboOther;is_symmetric"/>
<!-- http://purl.obolibrary.org/obo/namespace -->
<owl:AnnotationProperty rdf:about="&oboOther;namespace"/>
<!-- http://purl.obolibrary.org/obo/transitive_over -->
<owl:AnnotationProperty rdf:about="&oboOther;transitive_over"/>
<!-- http://purl.obolibrary.org/obo/edam#bioimaging -->
<!-- <owl:AnnotationProperty rdf:about="&oboOther;edam#bioimaging"> -->
<!-- <rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/> -->
<!-- </owl:AnnotationProperty> -->
<!-- http://purl.obolibrary.org/obo/edam#data -->
<owl:AnnotationProperty rdf:about="&oboOther;edam#data">
<rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/edam#edam -->
<owl:AnnotationProperty rdf:about="&oboOther;edam#edam">
<rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/edam#events -->
<owl:AnnotationProperty rdf:about="&oboOther;edam#events">
<rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/edam#formats -->
<owl:AnnotationProperty rdf:about="&oboOther;edam#formats">
<rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/edam#identifiers -->
<owl:AnnotationProperty rdf:about="&oboOther;edam#identifiers">
<rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/edam#obsolete -->
<owl:AnnotationProperty rdf:about="&oboOther;edam#obsolete">
<rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/edam#operations -->
<owl:AnnotationProperty rdf:about="&oboOther;edam#operations">
<rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/edam#topics -->
<owl:AnnotationProperty rdf:about="&oboOther;edam#topics">
<rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#SubsetProperty -->
<owl:AnnotationProperty rdf:about="&oboInOwl;SubsetProperty"/>
<!-- http://www.geneontology.org/formats/oboInOwl#consider -->
<owl:AnnotationProperty rdf:about="&oboInOwl;consider"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasAlternativeId -->
<owl:AnnotationProperty rdf:about="&oboInOwl;hasAlternativeId"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym -->
<owl:AnnotationProperty rdf:about="&oboInOwl;hasBroadSynonym"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="&oboInOwl;hasDbXref"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDefinition -->
<owl:AnnotationProperty rdf:about="&oboInOwl;hasDefinition"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
<owl:AnnotationProperty rdf:about="&oboInOwl;hasExactSynonym"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym -->
<owl:AnnotationProperty rdf:about="&oboInOwl;hasNarrowSynonym"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym -->
<owl:AnnotationProperty rdf:about="&oboInOwl;hasRelatedSynonym"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasSubset -->
<owl:AnnotationProperty rdf:about="&oboInOwl;hasSubset"/>
<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->
<owl:AnnotationProperty rdf:about="&oboInOwl;inSubset"/>
<!-- http://www.geneontology.org/formats/oboInOwl#isCyclic -->
<owl:AnnotationProperty rdf:about="&oboInOwl;isCyclic"/>
<!-- http://www.geneontology.org/formats/oboInOwl#replacedBy -->
<owl:AnnotationProperty rdf:about="&oboInOwl;replacedBy"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://edamontology.org/has_format -->
<owl:ObjectProperty rdf:about="http://edamontology.org/has_format">
<rdfs:label>has format</rdfs:label>
<rdfs:seeAlso>"http://purl.obolibrary.org/obo/OBI_0000298"</rdfs:seeAlso>
<rdfs:comment>Subject A can be any concept or entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated) that is (or is in a role of) 'Data', or an input, output, input or output argument of an 'Operation'. Object B can either be a concept that is a 'Format', or in unexpected cases an entity outside of an ontology that is a 'Format' or is in the role of a 'Format'. In EDAM, 'has_format' is not explicitly defined between EDAM concepts, only the inverse 'is_format_of'.</rdfs:comment>
<oboInOwl:isCyclic>false</oboInOwl:isCyclic>
<oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
<oboInOwl:inSubset>relations</oboInOwl:inSubset>
<rdfs:seeAlso>http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#has-quality"</rdfs:seeAlso>
<oboOther:is_reflexive>false</oboOther:is_reflexive>
<oboOther:is_symmetric>false</oboOther:is_symmetric>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<oboInOwl:hasDefinition>'A has_format B' defines for the subject A, that it has the object B as its data format.</oboInOwl:hasDefinition>
<oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
<rdfs:domain rdf:resource="http://edamontology.org/data_0006"/>
<rdfs:range rdf:resource="http://edamontology.org/format_1915"/>
</owl:ObjectProperty>
<!-- http://edamontology.org/has_function -->
<owl:ObjectProperty rdf:about="http://edamontology.org/has_function">
<rdfs:label>has function</rdfs:label>
<rdfs:seeAlso>http://wsio.org/has_function</rdfs:seeAlso>
<oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
<oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
<oboInOwl:hasRelatedSynonym>OBO_REL:bearer_of</oboInOwl:hasRelatedSynonym>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<rdfs:comment>Subject A can be any concept or entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated). Object B can either be a concept that is (or is in a role of) a function, or an entity outside of an ontology that is (or is in a role of) a function specification. In the scope of EDAM, 'has_function' serves only for relating annotated entities outside of EDAM with 'Operation' concepts.</rdfs:comment>
<oboOther:is_symmetric>false</oboOther:is_symmetric>
<rdfs:seeAlso>http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#has-quality"</rdfs:seeAlso>
<oboInOwl:isCyclic>true</oboInOwl:isCyclic>
<oboInOwl:hasDefinition>'A has_function B' defines for the subject A, that it has the object B as its function.</oboInOwl:hasDefinition>
<rdfs:seeAlso>"http://purl.obolibrary.org/obo/OBI_0000306"</rdfs:seeAlso>
<oboInOwl:inSubset>relations</oboInOwl:inSubset>
<oboOther:is_reflexive>false</oboOther:is_reflexive>
<rdfs:range rdf:resource="http://edamontology.org/operation_0004"/>
</owl:ObjectProperty>
<owl:Axiom>
<rdfs:comment>Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:bearer_of' is narrower in the sense that it only relates ontological categories (concepts) that are an 'independent_continuant' (snap:IndependentContinuant) with ontological categories that are a 'specifically_dependent_continuant' (snap:SpecificallyDependentContinuant), and broader in the sense that it relates with any borne objects not just functions of the subject.</rdfs:comment>
<owl:annotatedTarget>OBO_REL:bearer_of</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://edamontology.org/has_function"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
</owl:Axiom>
<owl:Axiom>
<rdfs:comment>In very unusual cases.</rdfs:comment>
<owl:annotatedTarget>true</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://edamontology.org/has_function"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
</owl:Axiom>
<!-- http://edamontology.org/has_identifier -->
<owl:ObjectProperty rdf:about="http://edamontology.org/has_identifier">
<rdfs:label>has identifier</rdfs:label>
<oboOther:is_reflexive>false</oboOther:is_reflexive>
<rdfs:comment>Subject A can be any concept or entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated). Object B can either be a concept that is an 'Identifier', or an entity outside of an ontology that is an 'Identifier' or is in the role of an 'Identifier'. In EDAM, 'has_identifier' is not explicitly defined between EDAM concepts, only the inverse 'is_identifier_of'.</rdfs:comment>
<oboInOwl:isCyclic>false</oboInOwl:isCyclic>
<oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
<oboInOwl:inSubset>relations</oboInOwl:inSubset>
<oboOther:is_symmetric>false</oboOther:is_symmetric>
<oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
<oboInOwl:hasDefinition>'A has_identifier B' defines for the subject A, that it has the object B as its identifier.</oboInOwl:hasDefinition>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<rdfs:domain rdf:resource="http://edamontology.org/data_0006"/>
</owl:ObjectProperty>
<!-- http://edamontology.org/has_input -->
<owl:ObjectProperty rdf:about="http://edamontology.org/has_input">
<rdfs:label>has input</rdfs:label>
<oboInOwl:hasRelatedSynonym>OBO_REL:has_participant</oboInOwl:hasRelatedSynonym>
<rdfs:seeAlso>"http://purl.obolibrary.org/obo/OBI_0000293"</rdfs:seeAlso>
<oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
<rdfs:seeAlso>http://wsio.org/has_input</rdfs:seeAlso>
<rdfs:comment>Subject A can either be concept that is or has an 'Operation' function, or an entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated) that has an 'Operation' function or is an 'Operation'. Object B can be any concept or entity. In EDAM, only 'has_input' is explicitly defined between EDAM concepts ('Operation' 'has_input' 'Data'). The inverse, 'is_input_of', is not explicitly defined.</rdfs:comment>
<oboInOwl:inSubset>relations</oboInOwl:inSubset>
<oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
<oboOther:is_symmetric>false</oboOther:is_symmetric>
<oboInOwl:hasDefinition>'A has_input B' defines for the subject A, that it has the object B as a necessary or actual input or input argument.</oboInOwl:hasDefinition>
<oboOther:is_reflexive>false</oboOther:is_reflexive>
<oboInOwl:isCyclic>true</oboInOwl:isCyclic>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<rdfs:range rdf:resource="http://edamontology.org/data_0006"/>
<rdfs:domain rdf:resource="http://edamontology.org/operation_0004"/>
</owl:ObjectProperty>
<owl:Axiom>
<rdfs:comment>'OBO_REL:has_participant' is narrower in the sense that it only relates ontological categories (concepts) that are a 'process' (span:Process) with ontological categories that are a 'continuant' (snap:Continuant), and broader in the sense that it relates with any participating objects not just inputs or input arguments of the subject.</rdfs:comment>
<owl:annotatedTarget>OBO_REL:has_participant</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://edamontology.org/has_input"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
</owl:Axiom>
<owl:Axiom>
<rdfs:comment>In very unusual cases.</rdfs:comment>
<owl:annotatedTarget>true</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://edamontology.org/has_input"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
</owl:Axiom>
<!-- http://edamontology.org/has_output -->
<owl:ObjectProperty rdf:about="http://edamontology.org/has_output">
<rdfs:label>has output</rdfs:label>
<rdfs:seeAlso>http://wsio.org/has_output</rdfs:seeAlso>
<rdfs:comment>Subject A can either be concept that is or has an 'Operation' function, or an entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated) that has an 'Operation' function or is an 'Operation'. Object B can be any concept or entity. In EDAM, only 'has_output' is explicitly defined between EDAM concepts ('Operation' 'has_output' 'Data'). The inverse, 'is_output_of', is not explicitly defined.</rdfs:comment>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<rdfs:seeAlso>"http://purl.obolibrary.org/obo/OBI_0000299"</rdfs:seeAlso>
<oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
<oboInOwl:inSubset>relations</oboInOwl:inSubset>
<oboInOwl:hasRelatedSynonym>OBO_REL:has_participant</oboInOwl:hasRelatedSynonym>
<oboInOwl:isCyclic>true</oboInOwl:isCyclic>
<oboInOwl:hasDefinition>'A has_output B' defines for the subject A, that it has the object B as a necessary or actual output or output argument.</oboInOwl:hasDefinition>
<oboOther:is_symmetric>false</oboOther:is_symmetric>
<oboOther:is_reflexive>false</oboOther:is_reflexive>
<oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
<rdfs:range rdf:resource="http://edamontology.org/data_0006"/>
<rdfs:domain rdf:resource="http://edamontology.org/operation_0004"/>
</owl:ObjectProperty>
<owl:Axiom>
<rdfs:comment>'OBO_REL:has_participant' is narrower in the sense that it only relates ontological categories (concepts) that are a 'process' (span:Process) with ontological categories that are a 'continuant' (snap:Continuant), and broader in the sense that it relates with any participating objects not just outputs or output arguments of the subject. It is also not clear whether an output (result) actually participates in the process that generates it.</rdfs:comment>
<owl:annotatedTarget>OBO_REL:has_participant</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://edamontology.org/has_output"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
</owl:Axiom>
<owl:Axiom>
<rdfs:comment>In very unusual cases.</rdfs:comment>
<owl:annotatedTarget>true</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://edamontology.org/has_output"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
</owl:Axiom>
<!-- http://edamontology.org/has_topic -->
<owl:ObjectProperty rdf:about="http://edamontology.org/has_topic">
<rdfs:label>has topic</rdfs:label>
<oboInOwl:inSubset>relations</oboInOwl:inSubset>
<oboInOwl:isCyclic>true</oboInOwl:isCyclic>
<rdfs:comment>Subject A can be any concept or entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated). Object B can either be a concept that is a 'Topic', or in unexpected cases an entity outside of an ontology that is a 'Topic' or is in the role of a 'Topic'. In EDAM, only 'has_topic' is explicitly defined between EDAM concepts ('Operation' or 'Data' 'has_topic' 'Topic'). The inverse, 'is_topic_of', is not explicitly defined.</rdfs:comment>
<oboOther:is_symmetric>false</oboOther:is_symmetric>
<oboInOwl:hasDefinition>'A has_topic B' defines for the subject A, that it has the object B as its topic (A is in the scope of a topic B).</oboInOwl:hasDefinition>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
<rdfs:seeAlso>http://annotation-ontology.googlecode.com/svn/trunk/annotation-core.owl#hasTopic</rdfs:seeAlso>
<oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
<rdfs:seeAlso>"http://purl.obolibrary.org/obo/IAO_0000136"</rdfs:seeAlso>
<oboOther:is_reflexive>false</oboOther:is_reflexive>
<rdfs:seeAlso>http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#has-quality</rdfs:seeAlso>
<rdfs:seeAlso>"http://purl.obolibrary.org/obo/OBI_0000298"</rdfs:seeAlso>
<rdfs:range rdf:resource="http://edamontology.org/topic_0003"/>
<rdfs:domain>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://edamontology.org/data_0006"/>
<rdf:Description rdf:about="http://edamontology.org/operation_0004"/>
</owl:unionOf>
</owl:Class>
</rdfs:domain>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedTarget>true</owl:annotatedTarget>
<rdfs:comment>In very unusual cases.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://edamontology.org/has_topic"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
</owl:Axiom>
<!-- http://edamontology.org/is_format_of -->
<owl:ObjectProperty rdf:about="http://edamontology.org/is_format_of">
<rdfs:label>is format of</rdfs:label>
<oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
<oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
<oboOther:is_reflexive>false</oboOther:is_reflexive>
<oboOther:is_symmetric>false</oboOther:is_symmetric>
<oboInOwl:isCyclic>false</oboInOwl:isCyclic>
<oboInOwl:hasDefinition>'A is_format_of B' defines for the subject A, that it is a data format of the object B.</oboInOwl:hasDefinition>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<oboInOwl:inSubset>relations</oboInOwl:inSubset>
<rdfs:comment>Subject A can either be a concept that is a 'Format', or in unexpected cases an entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated) that is a 'Format' or is in the role of a 'Format'. Object B can be any concept or entity outside of an ontology that is (or is in a role of) 'Data', or an input, output, input or output argument of an 'Operation'. In EDAM, only 'is_format_of' is explicitly defined between EDAM concepts ('Format' 'is_format_of' 'Data'). The inverse, 'has_format', is not explicitly defined.</rdfs:comment>
<oboInOwl:hasRelatedSynonym>OBO_REL:quality_of</oboInOwl:hasRelatedSynonym>
<rdfs:seeAlso>http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#inherent-in</rdfs:seeAlso>
<rdfs:range rdf:resource="http://edamontology.org/data_0006"/>
<rdfs:domain rdf:resource="http://edamontology.org/format_1915"/>
<owl:inverseOf rdf:resource="http://edamontology.org/has_format"/>
</owl:ObjectProperty>
<owl:Axiom>
<rdfs:comment>Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:quality_of' might be seen narrower in the sense that it only relates subjects that are a 'quality' (snap:Quality) with objects that are an 'independent_continuant' (snap:IndependentContinuant), and is broader in the sense that it relates any qualities of the object.</rdfs:comment>
<owl:annotatedTarget>OBO_REL:quality_of</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://edamontology.org/is_format_of"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
</owl:Axiom>
<!-- http://edamontology.org/is_function_of -->
<owl:ObjectProperty rdf:about="http://edamontology.org/is_function_of">
<rdfs:label>is function of</rdfs:label>
<rdfs:comment>Subject A can either be concept that is (or is in a role of) a function, or an entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated) that is (or is in a role of) a function specification. Object B can be any concept or entity. Within EDAM itself, 'is_function_of' is not used.</rdfs:comment>
<oboInOwl:hasRelatedSynonym>OBO_REL:inheres_in</oboInOwl:hasRelatedSynonym>
<oboInOwl:isCyclic>true</oboInOwl:isCyclic>
<oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
<oboOther:is_reflexive>false</oboOther:is_reflexive>
<oboInOwl:hasDefinition>'A is_function_of B' defines for the subject A, that it is a function of the object B.</oboInOwl:hasDefinition>
<oboInOwl:hasNarrowSynonym>OBO_REL:function_of</oboInOwl:hasNarrowSynonym>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<rdfs:seeAlso>http://wsio.org/is_function_of</rdfs:seeAlso>
<oboInOwl:inSubset>relations</oboInOwl:inSubset>
<rdfs:seeAlso>http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#inherent-in</rdfs:seeAlso>
<oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
<oboOther:is_symmetric>false</oboOther:is_symmetric>
<owl:inverseOf rdf:resource="http://edamontology.org/has_function"/>
<rdfs:domain rdf:resource="http://edamontology.org/operation_0004"/>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedTarget>OBO_REL:function_of</owl:annotatedTarget>
<rdfs:comment>Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:function_of' only relates subjects that are a 'function' (snap:Function) with objects that are an 'independent_continuant' (snap:IndependentContinuant), so for example no processes. It does not define explicitly that the subject is a function of the object.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://edamontology.org/is_function_of"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;hasNarrowSynonym"/>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedTarget>true</owl:annotatedTarget>
<rdfs:comment>In very unusual cases.</rdfs:comment>
<owl:annotatedSource rdf:resource="http://edamontology.org/is_function_of"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
</owl:Axiom>
<owl:Axiom>
<rdfs:comment>Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:inheres_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'specifically_dependent_continuant' (snap:SpecificallyDependentContinuant) with ontological categories that are an 'independent_continuant' (snap:IndependentContinuant), and broader in the sense that it relates any borne subjects not just functions.</rdfs:comment>
<owl:annotatedTarget>OBO_REL:inheres_in</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://edamontology.org/is_function_of"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
</owl:Axiom>
<!-- http://edamontology.org/is_identifier_of -->
<owl:ObjectProperty rdf:about="http://edamontology.org/is_identifier_of">
<rdfs:label>is identifier of</rdfs:label>
<oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
<oboOther:is_reflexive>false</oboOther:is_reflexive>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<oboInOwl:isCyclic>false</oboInOwl:isCyclic>
<oboInOwl:inSubset>relations</oboInOwl:inSubset>
<rdfs:comment>Subject A can either be a concept that is an 'Identifier', or an entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated) that is an 'Identifier' or is in the role of an 'Identifier'. Object B can be any concept or entity outside of an ontology. In EDAM, only 'is_identifier_of' is explicitly defined between EDAM concepts (only 'Identifier' 'is_identifier_of' 'Data'). The inverse, 'has_identifier', is not explicitly defined.</rdfs:comment>
<oboInOwl:hasDefinition>'A is_identifier_of B' defines for the subject A, that it is an identifier of the object B.</oboInOwl:hasDefinition>
<oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
<oboOther:is_symmetric>false</oboOther:is_symmetric>
<rdfs:range rdf:resource="http://edamontology.org/data_0006"/>
<owl:inverseOf rdf:resource="http://edamontology.org/has_identifier"/>
</owl:ObjectProperty>
<!-- http://edamontology.org/is_input_of -->
<owl:ObjectProperty rdf:about="http://edamontology.org/is_input_of">
<rdfs:label>is input of</rdfs:label>
<oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
<rdfs:seeAlso>http://wsio.org/is_input_of</rdfs:seeAlso>
<oboInOwl:inSubset>relations</oboInOwl:inSubset>
<oboInOwl:isCyclic>true</oboInOwl:isCyclic>
<oboOther:is_reflexive>false</oboOther:is_reflexive>
<oboInOwl:hasRelatedSynonym>OBO_REL:participates_in</oboInOwl:hasRelatedSynonym>
<oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
<rdfs:seeAlso>"http://purl.obolibrary.org/obo/OBI_0000295"</rdfs:seeAlso>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<rdfs:comment>Subject A can be any concept or entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated). Object B can either be a concept that is or has an 'Operation' function, or an entity outside of an ontology that has an 'Operation' function or is an 'Operation'. In EDAM, 'is_input_of' is not explicitly defined between EDAM concepts, only the inverse 'has_input'.</rdfs:comment>
<oboOther:is_symmetric>false</oboOther:is_symmetric>
<oboInOwl:hasDefinition>'A is_input_of B' defines for the subject A, that it as a necessary or actual input or input argument of the object B.</oboInOwl:hasDefinition>
<rdfs:domain rdf:resource="http://edamontology.org/data_0006"/>
<owl:inverseOf rdf:resource="http://edamontology.org/has_input"/>
<rdfs:range rdf:resource="http://edamontology.org/operation_0004"/>
</owl:ObjectProperty>
<owl:Axiom>
<rdfs:comment>In very unusual cases.</rdfs:comment>
<owl:annotatedTarget>true</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://edamontology.org/is_input_of"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
</owl:Axiom>
<owl:Axiom>
<rdfs:comment>'OBO_REL:participates_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'continuant' (snap:Continuant) with ontological categories that are a 'process' (span:Process), and broader in the sense that it relates any participating subjects not just inputs or input arguments.</rdfs:comment>
<owl:annotatedTarget>OBO_REL:participates_in</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://edamontology.org/is_input_of"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
</owl:Axiom>
<!-- http://edamontology.org/is_output_of -->
<owl:ObjectProperty rdf:about="http://edamontology.org/is_output_of">
<rdfs:label>is output of</rdfs:label>
<oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
<oboOther:is_reflexive>false</oboOther:is_reflexive>
<oboOther:is_symmetric>false</oboOther:is_symmetric>
<rdfs:comment>Subject A can be any concept or entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated). Object B can either be a concept that is or has an 'Operation' function, or an entity outside of an ontology that has an 'Operation' function or is an 'Operation'. In EDAM, 'is_output_of' is not explicitly defined between EDAM concepts, only the inverse 'has_output'.</rdfs:comment>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
<oboInOwl:hasDefinition>'A is_output_of B' defines for the subject A, that it as a necessary or actual output or output argument of the object B.</oboInOwl:hasDefinition>
<oboInOwl:hasRelatedSynonym>OBO_REL:participates_in</oboInOwl:hasRelatedSynonym>
<rdfs:seeAlso>http://wsio.org/is_output_of</rdfs:seeAlso>
<oboInOwl:isCyclic>true</oboInOwl:isCyclic>
<oboInOwl:inSubset>relations</oboInOwl:inSubset>
<rdfs:seeAlso>"http://purl.obolibrary.org/obo/OBI_0000312"</rdfs:seeAlso>
<rdfs:domain rdf:resource="http://edamontology.org/data_0006"/>
<owl:inverseOf rdf:resource="http://edamontology.org/has_output"/>
<rdfs:range rdf:resource="http://edamontology.org/operation_0004"/>
</owl:ObjectProperty>
<owl:Axiom>
<rdfs:comment>'OBO_REL:participates_in' is narrower in the sense that it only relates ontological categories (concepts) that are a 'continuant' (snap:Continuant) with ontological categories that are a 'process' (span:Process), and broader in the sense that it relates any participating subjects not just outputs or output arguments. It is also not clear whether an output (result) actually participates in the process that generates it.</rdfs:comment>
<owl:annotatedTarget>OBO_REL:participates_in</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://edamontology.org/is_output_of"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
</owl:Axiom>
<owl:Axiom>
<rdfs:comment>In very unusual cases.</rdfs:comment>
<owl:annotatedTarget>true</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://edamontology.org/is_output_of"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
</owl:Axiom>
<!-- http://edamontology.org/is_topic_of -->
<owl:ObjectProperty rdf:about="http://edamontology.org/is_topic_of">
<rdfs:label>is topic of</rdfs:label>
<oboInOwl:hasDefinition>'A is_topic_of B' defines for the subject A, that it is a topic of the object B (a topic A is the scope of B).</oboInOwl:hasDefinition>
<oboInOwl:inSubset>relations</oboInOwl:inSubset>
<oboInOwl:hasRelatedSynonym>OBO_REL:quality_of</oboInOwl:hasRelatedSynonym>
<oboOther:is_reflexive>false</oboOther:is_reflexive>
<oboInOwl:isCyclic>true</oboInOwl:isCyclic>
<oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
<rdfs:comment>Subject A can either be a concept that is a 'Topic', or in unexpected cases an entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated) that is a 'Topic' or is in the role of a 'Topic'. Object B can be any concept or entity outside of an ontology. In EDAM, 'is_topic_of' is not explicitly defined between EDAM concepts, only the inverse 'has_topic'.</rdfs:comment>
<rdfs:seeAlso>http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#inherent-in</rdfs:seeAlso>
<oboOther:is_symmetric>false</oboOther:is_symmetric>
<oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<owl:inverseOf rdf:resource="http://edamontology.org/has_topic"/>
<rdfs:domain rdf:resource="http://edamontology.org/topic_0003"/>
<rdfs:range>
<owl:Class>
<owl:unionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://edamontology.org/data_0006"/>
<rdf:Description rdf:about="http://edamontology.org/operation_0004"/>
</owl:unionOf>
</owl:Class>
</rdfs:range>
</owl:ObjectProperty>
<owl:Axiom>
<rdfs:comment>Is defined anywhere? Not in the 'unknown' version of RO. 'OBO_REL:quality_of' might be seen narrower in the sense that it only relates subjects that are a 'quality' (snap:Quality) with objects that are an 'independent_continuant' (snap:IndependentContinuant), and is broader in the sense that it relates any qualities of the object.</rdfs:comment>
<owl:annotatedTarget>OBO_REL:quality_of</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://edamontology.org/is_topic_of"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
</owl:Axiom>
<owl:Axiom>
<rdfs:comment>In very unusual cases.</rdfs:comment>
<owl:annotatedTarget>true</owl:annotatedTarget>
<owl:annotatedSource rdf:resource="http://edamontology.org/is_topic_of"/>
<owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
</owl:Axiom>
<!-- Generated by the OWL API (version 3.4.2) http://owlapi.sourceforge.net -->
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://edamontology.org/data_0006 -->
<owl:Class rdf:about="http://edamontology.org/data_0006">
<owl:disjointWith rdf:resource="http://edamontology.org/format_1915"/>
<owl:disjointWith rdf:resource="http://edamontology.org/operation_0004"/>
<owl:disjointWith rdf:resource="http://edamontology.org/topic_0003"/>
<created_in>beta12orEarlier</created_in>
<oboInOwl:hasDefinition>Information, represented in an information artefact (data record) that is 'understandable' by dedicated computational tools that can use the data as input or produce it as output.</oboInOwl:hasDefinition>
<oboInOwl:hasExactSynonym>Data record</oboInOwl:hasExactSynonym>
<oboInOwl:hasNarrowSynonym>Data set</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>Datum</oboInOwl:hasNarrowSynonym>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/edam#bioimaging"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/edam#data"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/edam#edam"/>
<oboInOwl:inSubset>navigation</oboInOwl:inSubset>
<rdfs:label>Data</rdfs:label>
<rdfs:seeAlso>"http://purl.obolibrary.org/obo/IAO_0000027"</rdfs:seeAlso>
<rdfs:seeAlso>"http://purl.obolibrary.org/obo/IAO_0000030"</rdfs:seeAlso>
<rdfs:seeAlso>http://purl.org/biotop/biotop.owl#DigitalEntity</rdfs:seeAlso>
<rdfs:seeAlso>http://semanticscience.org/resource/SIO_000069</rdfs:seeAlso>
<rdfs:seeAlso>http://semanticscience.org/resource/SIO_000088</rdfs:seeAlso>
<rdfs:seeAlso>http://wsio.org/data_002</rdfs:seeAlso>
<rdfs:seeAlso>http://www.ifomis.org/bfo/1.1/snap#Continuant</rdfs:seeAlso>
<rdfs:seeAlso>http://www.onto-med.de/ontologies/gfo.owl#Perpetuant</rdfs:seeAlso>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://edamontology.org/data_0006"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>Data record</owl:annotatedTarget>
<rdfs:comment>EDAM does not distinguish a data record (a tool-understandable information artefact) from data or datum (its content, the tool-understandable encoding of an information).</rdfs:comment>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://edamontology.org/data_0006"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/>
<owl:annotatedTarget>Data set</owl:annotatedTarget>
<rdfs:comment>EDAM does not distinguish the multiplicity of data, such as one data item (datum) versus a collection of data (data set).</rdfs:comment>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://edamontology.org/data_0006"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/>
<owl:annotatedTarget>Datum</owl:annotatedTarget>
<rdfs:comment>EDAM does not distinguish the multiplicity of data, such as one data item (datum) versus a collection of data (data set).</rdfs:comment>
</owl:Axiom>
<!-- http://edamontology.org/data_1D_dataset -->
<owl:Class rdf:about="http://edamontology.org/data_1D_dataset">
<rdfs:subClassOf rdf:resource="http://edamontology.org/data_Image_geometry"/>
<oboInOwl:inSubset>bioimaging</oboInOwl:inSubset>
<oboInOwl:inSubset>data</oboInOwl:inSubset>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<rdfs:label>1D image</rdfs:label>
</owl:Class>
<!-- http://edamontology.org/data_2D_dataset -->
<owl:Class rdf:about="http://edamontology.org/data_2D_dataset">
<rdfs:subClassOf rdf:resource="http://edamontology.org/data_Image"/>
<rdfs:subClassOf rdf:resource="http://edamontology.org/data_Image_geometry"/>
<related_term>tile</related_term>
<related_term>tiling</related_term>
<oboInOwl:hasDefinition>A (2D) image is the optical counterpart of an object produced by an optical or an electronic device.
A (2D) digital image is a representation of a real (2D) image in a form of a 2D array, or matrix, containing numbers that can be stored and handled by a digital computer.</oboInOwl:hasDefinition>
<oboInOwl:inSubset>bioimaging</oboInOwl:inSubset>
<oboInOwl:inSubset>data</oboInOwl:inSubset>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<rdfs:comment>For each pixel, the imaging device records a number, or a small set of numbers, that describe some property of this pixel, such as its brightness (the intensity of the light) or its color.
Numbers in a matrix are responses from a sensor measured at a set of sampling points, arranged into rows and columns. Digital image is a union of pixels - picture elements - assigned to sampling points. Pixels are typically square regions centered at a sampling point.</rdfs:comment>
<rdfs:comment>wikipedia has a poor definition of an image</rdfs:comment>
<rdfs:label>2D image</rdfs:label>
<rdfs:seeAlso rdf:resource="https://en.wikipedia.org/wiki/Digital_image"/>
</owl:Class>
<!-- http://edamontology.org/data_3D_dataset -->
<owl:Class rdf:about="http://edamontology.org/data_3D_dataset">
<rdfs:subClassOf rdf:resource="http://edamontology.org/data_Image"/>
<rdfs:subClassOf rdf:resource="http://edamontology.org/data_Image_geometry"/>
<related_term>stack</related_term>
<oboInOwl:hasRelatedSynonym>Image stack</oboInOwl:hasRelatedSynonym>
<oboInOwl:inSubset>bioimaging</oboInOwl:inSubset>
<oboInOwl:inSubset>data</oboInOwl:inSubset>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<rdfs:label>3D image</rdfs:label>
</owl:Class>
<!-- http://edamontology.org/data_4D_dataset -->
<owl:Class rdf:about="http://edamontology.org/data_4D_dataset">
<rdfs:subClassOf rdf:resource="http://edamontology.org/data_Image_geometry"/>
<oboInOwl:inSubset>bioimaging</oboInOwl:inSubset>
<oboInOwl:inSubset>data</oboInOwl:inSubset>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<rdfs:label>nD image</rdfs:label>
</owl:Class>
<!-- http://edamontology.org/data_Colour -->
<owl:Class rdf:about="http://edamontology.org/data_Colour">
<rdfs:subClassOf rdf:resource="http://edamontology.org/data__RCDMkOl5gzD23OFsPf6vr4a"/>
<oboInOwl:hasNarrowSynonym>channel</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>rgb</oboInOwl:hasNarrowSynonym>
<oboInOwl:inSubset>bioimaging</oboInOwl:inSubset>
<oboInOwl:inSubset>data</oboInOwl:inSubset>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<rdfs:label>Colour</rdfs:label>
</owl:Class>
<!-- http://edamontology.org/data_Greyscale -->
<owl:Class rdf:about="http://edamontology.org/data_Greyscale">
<rdfs:subClassOf rdf:resource="http://edamontology.org/data__RCDMkOl5gzD23OFsPf6vr4a"/>
<oboInOwl:inSubset>bioimaging</oboInOwl:inSubset>
<oboInOwl:inSubset>data</oboInOwl:inSubset>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<rdfs:label>Greyscale</rdfs:label>
</owl:Class>
<!-- http://edamontology.org/data_Image -->
<owl:Class rdf:about="http://edamontology.org/data_Image">
<rdfs:subClassOf rdf:resource="http://edamontology.org/data_0006"/>
<oboInOwl:hasExactSynonym>Image data</oboInOwl:hasExactSynonym>
<oboInOwl:hasNarrowSynonym>Digital image</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>Image set</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>Pixel-based image</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>Raster image</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>Set of images</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasNarrowSynonym>Voxel-based image</oboInOwl:hasNarrowSynonym>
<oboInOwl:inSubset>bioimaging</oboInOwl:inSubset>
<oboInOwl:inSubset>data</oboInOwl:inSubset>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<rdfs:label>Image</rdfs:label>
</owl:Class>
<!-- http://edamontology.org/data_Image_geometry -->
<owl:Class rdf:about="http://edamontology.org/data_Image_geometry">
<rdfs:subClassOf rdf:resource="http://edamontology.org/data__R80aNLt4YY02ByptWQa2yrY"/>
<oboInOwl:inSubset>bioimaging</oboInOwl:inSubset>
<oboInOwl:inSubset>data</oboInOwl:inSubset>
<oboInOwl:inSubset>edam</oboInOwl:inSubset>
<rdfs:label>Image data properties</rdfs:label>
</owl:Class>