Which tools did you use to generate 5 different features vector?

[xuzhang5788]

Thank you so much for your code.
You mentioned that you used 5 different features to compare which feature or feature combinations are best for your tasks. I couldn't find which tools did you use to extract features from protein's sequences. It will be great if you would like to list those tools. Many thanks

[SaidaSaad]

@xuzhang5788 @ehsanasgari

Hello , I am also have the same question , since i did not find any explanation of this .
Also I do not know how he generate those two file train_mat_Y.npy and X_train.npy
for example the first sequence with length 12 he create for it
an array in rain_mat_Y.npy with shape [700,9] (I understood this one hot vector for every amino acid , but i thought it should be 20 not 9)
and another array in X_train_408.npy with shape [700,408] , do not know how this file has been created too?

I appreciate if you can help me in that .

Thanks
Best Regards
Saida