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$ multiqc -f . /// MultiQC 🔍 | v1.11| multiqc | Search path : /home/sguizard/Work/Dev/github/nf-core/isoseq/work/34/44d269a98f606c853fc2cf63890151| searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 17/17 | custom_content | nf-core-isoseq-summary: Found 1 sample (html)| ccs | Found 3 reports[]╭──────────────────────────────────────────────────── Oops! The 'ccs' MultiQC module broke... ────────────────────────────────────────────────────╮│ Please copy this log and report it at https://github.com/ewels/MultiQC/issues ││ Please attach a file that triggers the error. The last file found was: ./alz.1perc.subreads.10000.chunk3.report.json ││ ││ Traceback (most recent call last): ││ File "/home/sguizard/Work/Softwares/anaconda3/envs/bioinfo/lib/python3.9/site-packages/multiqc/multiqc.py", line 624, in run ││ output = mod() ││ File "/home/sguizard/Work/Softwares/anaconda3/envs/bioinfo/lib/python3.9/site-packages/multiqc/modules/ccs/ccs.py", line 40, in __init__ ││ self.add_sections() ││ File "/home/sguizard/Work/Softwares/anaconda3/envs/bioinfo/lib/python3.9/site-packages/multiqc/modules/ccs/ccs.py", line 145, in add_sections ││ plot=bargraph.plot(plot_data, plot_cats, config), ││ File "/home/sguizard/Work/Softwares/anaconda3/envs/bioinfo/lib/python3.9/site-packages/multiqc/plots/bargraph.py", line 104, in plot ││ if type(cats[0]) is str or type(cats[0]) is unicode: ││ IndexError: list index out of range ││ │╰─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯| multiqc | Compressing plot data| multiqc | Deleting : multiqc_report.html (-f was specified)| multiqc | Deleting : multiqc_data (-f was specified)| multiqc | Deleting : multiqc_plots (-f was specified)| multiqc | Report : multiqc_report.html| multiqc | Data : multiqc_data| multiqc | Plots : multiqc_plots| multiqc | MultiQC complete
The text was updated successfully, but these errors were encountered:
Description of bug
The modules ccs reports the following error:
IndexError: list index out of range
This is caused by a dictionary that remains empty:
https://github.com/ewels/MultiQC/blob/0cf235dff69a272e31f60af5a58ef5125914f282/multiqc/modules/ccs/ccs.py#L124-L126
File that triggers the error
alz.1perc.subreads.10000.chunk3.report.zip
MultiQC Error log
The text was updated successfully, but these errors were encountered: