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action.yml
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action.yml
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name: tower-action
author: Phil Ewels
description: Launch a workflow using Nextflow Tower (https://tower.nf)
branding:
icon: 'play'
color: 'purple'
inputs:
access_token:
description: Nextflow Tower access token
required: true
compute_env:
description: Nextflow Tower compute env
required: false
workspace_id:
description: Nextflow Tower workspace ID
required: false
api_endpoint:
description: Tower API URL
required: false
default: https://api.tower.nf
pipeline:
description: Pipeline repository
default: https://github.com/${{ github.repository }}
required: false
revision:
description: Pipeline revision (release / branch)
default: ${{ github.sha }}
required: false
workdir:
description: Nextflow work directory
required: true
parameters:
description: Pipeline parameters
required: false
profiles:
description: Nextflow config profiles
required: false
nextflow_config:
description: Nextflow config options
required: false
pre_run_script:
description: Pre-run script before launch
required: false
runs:
using: 'docker'
image: Dockerfile
env:
TOWER_WORKSPACE_ID: ${{ inputs.workspace_id }}
TOWER_API_ENDPOINT: ${{ inputs.api_endpoint }}
TOWER_ACCESS_TOKEN: ${{ inputs.access_token }}
TOWER_COMPUTE_ENV: ${{ inputs.compute_env }}
PIPELINE: ${{ inputs.pipeline }}
REVISION: ${{ inputs.revision }}
WORKDIR: ${{ inputs.workdir }}
PARAMETERS: ${{ toJson(fromJson(inputs.parameters)) }}
CONFIG_PROFILES: ${{ inputs.profiles }}
NEXTFLOW_CONFIG: ${{ inputs.nextflow_config }}
PRE_RUN_SCRIPT: ${{ inputs.pre_run_script }}