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word2vec.py
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word2vec.py
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# -*- coding: utf-8 -*-
import logging
import sys
import os
import heapq
from timeit import default_timer
from copy import deepcopy
from collections import defaultdict
import threading
import itertools
from gensim.utils import keep_vocab_item
try:
from queue import Queue, Empty
except ImportError:
from Queue import Queue, Empty
from numpy import exp, log, dot, zeros, outer, random, dtype, float32 as REAL,\
uint32, seterr, array, uint8, vstack, fromstring, sqrt, newaxis,\
ndarray, empty, sum as np_sum, prod, ones, ascontiguousarray
from gensim import utils, matutils # utility fnc for pickling, common scipy operations etc
from six import iteritems, itervalues, string_types
from six.moves import xrange
from types import GeneratorType
logging.basicConfig(stream=sys.stdout, level=logging.DEBUG)
logger = logging.getLogger(__name__)
#logger.setLevel(logging.DEBUG)
# failed... fall back to plain numpy (20-80x slower training than the above)
FAST_VERSION = -1
MAX_WORDS_IN_BATCH = 10000
def train_batch_sg(model, sentences, alpha, work=None):
"""
Update skip-gram model by training on a sequence of sentences.
Each sentence is a list of string tokens, which are looked up in the model's
vocab dictionary. Called internally from `Word2Vec.train()`.
This is the non-optimized, Python version. If you have cython installed, gensim
will use the optimized version from word2vec_inner instead.
"""
result = 0
logger.debug("SENTENCES: word_vocabs %s", len(sentences))
exit()
for sentence in sentences:
word_vocabs = [model.vocab[w[0]] for w in sentence if w in model.vocab and
model.vocab[w[0]].sample_int > model.random.rand() * 2**32]
for pos, word in enumerate(word_vocabs):
reduced_window = model.random.randint(model.window) # `b` in the original word2vec code
# now go over all words from the (reduced) window, predicting each one in turn
start = max(0, pos - model.window + reduced_window)
for pos2, word2 in enumerate(word_vocabs[start:(pos + model.window + 1 - reduced_window)], start):
# don't train on the `word` itself
if pos2 != pos:
train_sg_pair(model, model.index2word[word.index], word2.index, alpha)
result += len(word_vocabs)
return result
def train_batch_cbow(model, sentences, alpha, work=None, neu1=None):
"""
Update CBOW model by training on a sequence of sentences.
Each sentence is a list of string tokens, which are looked up in the model's
vocab dictionary. Called internally from `Word2Vec.train()`.
This is the non-optimized, Python version. If you have cython installed, gensim
will use the optimized version from word2vec_inner instead.
"""
result = 0
logger.info("SENTENCES: word_vocabs %s", len(sentences))
exit()
for sentence in sentences:
word_vocabs = [model.vocab[w[0]] for w in sentence if w in model.vocab and
model.vocab[w[0]].sample_int > model.random.rand() * 2**32]
for pos, word in enumerate(word_vocabs):
reduced_window = model.random.randint(model.window) # `b` in the original word2vec code
start = max(0, pos - model.window + reduced_window)
window_pos = enumerate(word_vocabs[start:(pos + model.window + 1 - reduced_window)], start)
word2_indices = [word2.index for pos2, word2 in window_pos if (word2 is not None and pos2 != pos)]
l1 = np_sum(model.syn0[word2_indices], axis=0) # 1 x vector_size
if word2_indices and model.cbow_mean:
l1 /= len(word2_indices)
train_cbow_pair(model, word, word2_indices, l1, alpha)
result += len(word_vocabs)
return result
def score_sentence_sg(model, sentence, work=None):
"""
Obtain likelihood score for a single sentence in a fitted skip-gram representaion.
The sentence is a list of Vocab objects (or None, when the corresponding
word is not in the vocabulary). Called internally from `Word2Vec.score()`.
This is the non-optimized, Python version. If you have cython installed, gensim
will use the optimized version from word2vec_inner instead.
"""
log_prob_sentence = 0.0
if model.negative:
raise RuntimeError("scoring is only available for HS=True")
word_vocabs = [model.vocab[w] for w in sentence if w in model.vocab]
for pos, word in enumerate(word_vocabs):
if word is None:
continue # OOV word in the input sentence => skip
# now go over all words from the window, predicting each one in turn
start = max(0, pos - model.window)
for pos2, word2 in enumerate(word_vocabs[start : pos + model.window + 1], start):
# don't train on OOV words and on the `word` itself
if word2 is not None and pos2 != pos:
log_prob_sentence += score_sg_pair(model, word, word2)
return log_prob_sentence
def score_sentence_cbow(model, sentence, alpha, work=None, neu1=None):
"""
Obtain likelihood score for a single sentence in a fitted CBOW representaion.
The sentence is a list of Vocab objects (or None, where the corresponding
word is not in the vocabulary. Called internally from `Word2Vec.score()`.
This is the non-optimized, Python version. If you have cython installed, gensim
will use the optimized version from word2vec_inner instead.
"""
log_prob_sentence = 0.0
if model.negative:
raise RuntimeError("scoring is only available for HS=True")
word_vocabs = [model.vocab[w] for w in sentence if w in model.vocab]
for pos, word in enumerate(word_vocabs):
if word is None:
continue # OOV word in the input sentence => skip
start = max(0, pos - model.window)
window_pos = enumerate(word_vocabs[start:(pos + model.window + 1)], start)
word2_indices = [word2.index for pos2, word2 in window_pos if (word2 is not None and pos2 != pos)]
l1 = np_sum(model.syn0[word2_indices], axis=0) # 1 x layer1_size
if word2_indices and model.cbow_mean:
l1 /= len(word2_indices)
log_prob_sentence += score_cbow_pair(model, word, word2_indices, l1)
return log_prob_sentence
def train_sg_pair(model, word, context_index, alpha, learn_vectors=True, learn_hidden=True,
context_vectors=None, context_locks=None):
if context_vectors is None:
context_vectors = model.syn0
if context_locks is None:
context_locks = model.syn0_lockf
logger.debug("SENTENCES: word_vocabs %s", len(word))
raise Exception("mierda")
if word not in model.vocab:
return
predict_word = model.vocab[word] # target word (NN output)
l1 = context_vectors[context_index] # input word (NN input/projection layer)
lock_factor = context_locks[context_index]
neu1e = zeros(l1.shape)
if model.hs:
# work on the entire tree at once, to push as much work into numpy's C routines as possible (performance)
l2a = deepcopy(model.syn1[predict_word.point]) # 2d matrix, codelen x layer1_size
fa = 1.0 / (1.0 + exp(-dot(l1, l2a.T))) # propagate hidden -> output
ga = (1. - predict_word.code - fa) * alpha # vector of error gradients multiplied by the learning rate
if learn_hidden:
model.syn1[predict_word.point] += outer(ga, l1) # learn hidden -> output
neu1e += dot(ga, l2a) # save error
if model.negative:
# use this word (label = 1) + `negative` other random words not from this sentence (label = 0)
word_indices = [predict_word.index]
while len(word_indices) < model.negative + 1:
w = model.cum_table.searchsorted(model.random.randint(model.cum_table[-1]))
if w != predict_word.index:
word_indices.append(w)
l2b = model.syn1neg[word_indices] # 2d matrix, k+1 x layer1_size
fb = 1. / (1. + exp(-dot(l1, l2b.T))) # propagate hidden -> output
gb = (model.neg_labels - fb) * alpha # vector of error gradients multiplied by the learning rate
if learn_hidden:
model.syn1neg[word_indices] += outer(gb, l1) # learn hidden -> output
neu1e += dot(gb, l2b) # save error
if learn_vectors:
l1 += neu1e * lock_factor # learn input -> hidden (mutates model.syn0[word2.index], if that is l1)
return neu1e
#anyadido el peso, que es el valor que queremos predecir
def train_cbow_pair(model, word, input_word_indices, l1, alpha, learn_vectors=True, learn_hidden=True, weight=1.):
neu1e = zeros(l1.shape)
if model.hs:
l2a = model.syn1[word.point] # 2d matrix, codelen x layer1_size
fa = 1. / (1. + exp(-dot(l1, l2a.T))) # propagate hidden -> output
ga = (weight - word.code - fa) * alpha # vector of error gradients multiplied by the learning rate
if learn_hidden:
model.syn1[word.point] += outer(ga, l1) # learn hidden -> output
neu1e += dot(ga, l2a) # save error
if model.negative:
# use this word (label = 1) + `negative` other random words not from this sentence (label = 0)
word_indices = [word.index]
while len(word_indices) < model.negative + 1:
w = model.cum_table.searchsorted(model.random.randint(model.cum_table[-1]))
if w != word.index:
word_indices.append(w)
l2b = model.syn1neg[word_indices] # 2d matrix, k+1 x layer1_size
fb = 1. / (1. + exp(-dot(l1, l2b.T))) # propagate hidden -> output
gb = (model.neg_labels - fb) * alpha # vector of error gradients multiplied by the learning rate
if learn_hidden:
model.syn1neg[word_indices] += outer(gb, l1) # learn hidden -> output
neu1e += dot(gb, l2b) # save error
if learn_vectors:
# learn input -> hidden, here for all words in the window separately
if not model.cbow_mean and input_word_indices:
neu1e /= len(input_word_indices)
for i in input_word_indices:
model.syn0[i] += neu1e * model.syn0_lockf[i]
return neu1e
def score_sg_pair(model, word, word2):
l1 = model.syn0[word2.index]
l2a = deepcopy(model.syn1[word.point]) # 2d matrix, codelen x layer1_size
sgn = -1.0**word.code # ch function, 0-> 1, 1 -> -1
lprob = -log(1.0 + exp(-sgn*dot(l1, l2a.T)))
return sum(lprob)
def score_cbow_pair(model, word, word2_indices, l1):
l2a = model.syn1[word.point] # 2d matrix, codelen x layer1_size
sgn = -1.0**word.code # ch function, 0-> 1, 1 -> -1
lprob = -log(1.0 + exp(-sgn*dot(l1, l2a.T)))
return sum(lprob)
class Vocab(object):
"""
A single vocabulary item, used internally for collecting per-word frequency/sampling info,
and for constructing binary trees (incl. both word leaves and inner nodes).
"""
def __init__(self, **kwargs):
self.count = 0
self.__dict__.update(kwargs)
def __lt__(self, other): # used for sorting in a priority queue
return self.count < other.count
def __str__(self):
vals = ['%s:%r' % (key, self.__dict__[key]) for key in sorted(self.__dict__) if not key.startswith('_')]
return "%s(%s)" % (self.__class__.__name__, ', '.join(vals))
class Word2Vec(utils.SaveLoad):
"""
Class for training, using and evaluating neural networks described in https://code.google.com/p/word2vec/
The model can be stored/loaded via its `save()` and `load()` methods, or stored/loaded in a format
compatible with the original word2vec implementation via `save_word2vec_format()` and `load_word2vec_format()`.
"""
def __init__(
self, sentences=None, size=100, alpha=0.025, window=5, min_count=5,
max_vocab_size=None, sample=1e-3, seed=1, workers=3, min_alpha=0.0001,
sg=0, hs=0, negative=5, cbow_mean=1, hashfxn=hash, iter=5, null_word=0,
trim_rule=None, sorted_vocab=1, batch_words=MAX_WORDS_IN_BATCH):
"""
Initialize the model from an iterable of `sentences`. Each sentence is a
list of words (unicode strings) that will be used for training.
The `sentences` iterable can be simply a list, but for larger corpora,
consider an iterable that streams the sentences directly from disk/network.
See :class:`BrownCorpus`, :class:`Text8Corpus` or :class:`LineSentence` in
this module for such examples.
If you don't supply `sentences`, the model is left uninitialized -- use if
you plan to initialize it in some other way.
`sg` defines the training algorithm. By default (`sg=0`), CBOW is used.
Otherwise (`sg=1`), skip-gram is employed.
`size` is the dimensionality of the feature vectors.
`window` is the maximum distance between the current and predicted word within a sentence.
`alpha` is the initial learning rate (will linearly drop to zero as training progresses).
`seed` = for the random number generator. Initial vectors for each
word are seeded with a hash of the concatenation of word + str(seed).
`min_count` = ignore all words with total frequency lower than this.
`max_vocab_size` = limit RAM during vocabulary building; if there are more unique
words than this, then prune the infrequent ones. Every 10 million word types
need about 1GB of RAM. Set to `None` for no limit (default).
`sample` = threshold for configuring which higher-frequency words are randomly downsampled;
default is 1e-3, useful range is (0, 1e-5).
`workers` = use this many worker threads to train the model (=faster training with multicore machines).
`hs` = if 1, hierarchical softmax will be used for model training.
If set to 0 (default), and `negative` is non-zero, negative sampling will be used.
`negative` = if > 0, negative sampling will be used, the int for negative
specifies how many "noise words" should be drawn (usually between 5-20).
Default is 5. If set to 0, no negative samping is used.
`cbow_mean` = if 0, use the sum of the context word vectors. If 1 (default), use the mean.
Only applies when cbow is used.
`hashfxn` = hash function to use to randomly initialize weights, for increased
training reproducibility. Default is Python's rudimentary built in hash function.
`iter` = number of iterations (epochs) over the corpus.
`trim_rule` = vocabulary trimming rule, specifies whether certain words should remain
in the vocabulary, be trimmed away, or handled using the default (discard if word count < min_count).
Can be None (min_count will be used), or a callable that accepts parameters (word, count, min_count) and
returns either util.RULE_DISCARD, util.RULE_KEEP or util.RULE_DEFAULT.
Note: The rule, if given, is only used prune vocabulary during build_vocab() and is not stored as part
of the model.
`sorted_vocab` = if 1 (default), sort the vocabulary by descending frequency before
assigning word indexes.
`batch_words` = target size (in words) for batches of examples passed to worker threads (and
thus cython routines). Default is 10000. (Larger batches can be passed if individual
texts are longer, but the cython code may truncate.)
"""
self.vocab = {} # mapping from a word (string) to a Vocab object
self.index2word = [] # map from a word's matrix index (int) to word (string)
self.sg = int(sg)
self.cum_table = None # for negative sampling
self.vector_size = int(size)
self.layer1_size = int(size)
if size % 4 != 0:
logger.warning("consider setting layer size to a multiple of 4 for greater performance")
self.alpha = float(alpha)
self.window = int(window)
self.max_vocab_size = max_vocab_size
self.seed = seed
self.random = random.RandomState(seed)
self.min_count = min_count
self.sample = sample
self.workers = int(workers)
self.min_alpha = float(min_alpha)
self.hs = hs
self.negative = negative
self.cbow_mean = int(cbow_mean)
self.hashfxn = hashfxn
self.iter = iter
self.null_word = null_word
self.train_count = 0
self.total_train_time = 0
self.sorted_vocab = sorted_vocab
self.batch_words = batch_words
if sentences is not None:
if isinstance(sentences, GeneratorType):
raise TypeError("You can't pass a generator as the sentences argument. Try an iterator.")
self.build_vocab(sentences, trim_rule=trim_rule)
self.train(sentences)
def make_cum_table(self, power=0.75, domain=2**31 - 1):
"""
Create a cumulative-distribution table using stored vocabulary word counts for
drawing random words in the negative-sampling training routines.
To draw a word index, choose a random integer up to the maximum value in the
table (cum_table[-1]), then finding that integer's sorted insertion point
(as if by bisect_left or ndarray.searchsorted()). That insertion point is the
drawn index, coming up in proportion equal to the increment at that slot.
Called internally from 'build_vocab()'.
"""
vocab_size = len(self.index2word)
self.cum_table = zeros(vocab_size, dtype=uint32)
# compute sum of all power (Z in paper)
train_words_pow = float(sum([self.vocab[word].count**power for word in self.vocab]))
cumulative = 0.0
for word_index in range(vocab_size):
cumulative += self.vocab[self.index2word[word_index]].count**power / train_words_pow
self.cum_table[word_index] = round(cumulative * domain)
if len(self.cum_table) > 0:
assert self.cum_table[-1] == domain
def create_binary_tree(self):
"""
Create a binary Huffman tree using stored vocabulary word counts. Frequent words
will have shorter binary codes. Called internally from `build_vocab()`.
"""
logger.info("constructing a huffman tree from %i words", len(self.vocab))
# build the huffman tree
heap = list(itervalues(self.vocab))
heapq.heapify(heap)
for i in xrange(len(self.vocab) - 1):
min1, min2 = heapq.heappop(heap), heapq.heappop(heap)
heapq.heappush(heap, Vocab(count=min1.count + min2.count, index=i + len(self.vocab), left=min1, right=min2))
# recurse over the tree, assigning a binary code to each vocabulary word
if heap:
max_depth, stack = 0, [(heap[0], [], [])]
while stack:
node, codes, points = stack.pop()
if node.index < len(self.vocab):
# leaf node => store its path from the root
node.code, node.point = codes, points
max_depth = max(len(codes), max_depth)
else:
# inner node => continue recursion
points = array(list(points) + [node.index - len(self.vocab)], dtype=uint32)
stack.append((node.left, array(list(codes) + [0], dtype=uint8), points))
stack.append((node.right, array(list(codes) + [1], dtype=uint8), points))
logger.info("built huffman tree with maximum node depth %i", max_depth)
def build_vocab(self, sentences, keep_raw_vocab=False, trim_rule=None):
"""
Build vocabulary from a sequence of sentences (can be a once-only generator stream).
Each sentence must be a list of unicode strings.
"""
self.scan_vocab(sentences, trim_rule=trim_rule) # initial survey
self.scale_vocab(keep_raw_vocab=keep_raw_vocab, trim_rule=trim_rule) # trim by min_count & precalculate downsampling
self.finalize_vocab() # build tables & arrays
def scan_vocab(self, sentences, progress_per=10000, trim_rule=None):
"""Do an initial scan of all words appearing in sentences."""
logger.info("collecting all words and their counts")
sentence_no = -1
total_words = 0
min_reduce = 1
vocab = defaultdict(int)
logger.info("PROGRESS: tam_sentences = %i", len(sentences))
for sentence_no, sentence in enumerate(sentences):
if sentence_no % progress_per == 0:
logger.info("PROGRESS: at sentence #%i, processed %i words, keeping %i word types",
sentence_no, sum(itervalues(vocab)) + total_words, len(vocab))
for word in sentence:
logger.info("%s", word)
vocab[word] += 1
if self.max_vocab_size and len(vocab) > self.max_vocab_size:
total_words += utils.prune_vocab(vocab, min_reduce, trim_rule=trim_rule)
min_reduce += 1
total_words += sum(itervalues(vocab))
logger.info("collected %i word types from a corpus of %i raw words and %i sentences",
len(vocab), total_words, sentence_no + 1)
self.corpus_count = sentence_no + 1
self.raw_vocab = vocab
def scale_vocab(self, min_count=None, sample=None, dry_run=False, keep_raw_vocab=False, trim_rule=None):
"""
Apply vocabulary settings for `min_count` (discarding less-frequent words)
and `sample` (controlling the downsampling of more-frequent words).
Calling with `dry_run=True` will only simulate the provided settings and
report the size of the retained vocabulary, effective corpus length, and
estimated memory requirements. Results are both printed via logging and
returned as a dict.
Delete the raw vocabulary after the scaling is done to free up RAM,
unless `keep_raw_vocab` is set.
"""
min_count = min_count or self.min_count
sample = sample or self.sample
# Discard words less-frequent than min_count
if not dry_run:
self.index2word = []
# make stored settings match these applied settings
self.min_count = min_count
self.sample = sample
self.vocab = {}
drop_unique, drop_total, retain_total, original_total = 0, 0, 0, 0
retain_words = []
for word, v in iteritems(self.raw_vocab):
if keep_vocab_item(word, v, min_count, trim_rule=trim_rule):
retain_words.append(word)
retain_total += v
original_total += v
if not dry_run:
self.vocab[word] = Vocab(count=v, index=len(self.index2word))
self.index2word.append(word)
else:
drop_unique += 1
drop_total += v
original_total += v
logger.info("min_count=%d retains %i unique words (drops %i)",
min_count, len(retain_words), drop_unique)
logger.info("min_count leaves %i word corpus (%i%% of original %i)",
retain_total, retain_total * 100 / max(original_total, 1), original_total)
# Precalculate each vocabulary item's threshold for sampling
if not sample:
# no words downsampled
threshold_count = retain_total
elif sample < 1.0:
# traditional meaning: set parameter as proportion of total
threshold_count = sample * retain_total
else:
# new shorthand: sample >= 1 means downsample all words with higher count than sample
threshold_count = int(sample * (3 + sqrt(5)) / 2)
downsample_total, downsample_unique = 0, 0
for w in retain_words:
v = self.raw_vocab[w]
word_probability = (sqrt(v / threshold_count) + 1) * (threshold_count / v)
if word_probability < 1.0:
downsample_unique += 1
downsample_total += word_probability * v
else:
word_probability = 1.0
downsample_total += v
if not dry_run:
self.vocab[w].sample_int = int(round(word_probability * 2**32))
if not dry_run and not keep_raw_vocab:
logger.info("deleting the raw counts dictionary of %i items", len(self.raw_vocab))
self.raw_vocab = defaultdict(int)
logger.info("sample=%g downsamples %i most-common words", sample, downsample_unique)
logger.info("downsampling leaves estimated %i word corpus (%.1f%% of prior %i)",
downsample_total, downsample_total * 100.0 / max(retain_total, 1), retain_total)
# return from each step: words-affected, resulting-corpus-size
report_values = {'drop_unique': drop_unique, 'retain_total': retain_total,
'downsample_unique': downsample_unique, 'downsample_total': int(downsample_total)}
# print extra memory estimates
report_values['memory'] = self.estimate_memory(vocab_size=len(retain_words))
return report_values
def finalize_vocab(self):
"""Build tables and model weights based on final vocabulary settings."""
if not self.index2word:
self.scale_vocab()
if self.sorted_vocab:
self.sort_vocab()
if self.hs:
# add info about each word's Huffman encoding
self.create_binary_tree()
if self.negative:
# build the table for drawing random words (for negative sampling)
self.make_cum_table()
if self.null_word:
# create null pseudo-word for padding when using concatenative L1 (run-of-words)
# this word is only ever input – never predicted – so count, huffman-point, etc doesn't matter
word, v = '\0', Vocab(count=1, sample_int=0)
v.index = len(self.vocab)
self.index2word.append(word)
self.vocab[word] = v
# set initial input/projection and hidden weights
self.reset_weights()
def sort_vocab(self):
"""Sort the vocabulary so the most frequent words have the lowest indexes."""
if hasattr(self, 'syn0'):
raise RuntimeError("must sort before initializing vectors/weights")
self.index2word.sort(key=lambda word: self.vocab[word].count, reverse=True)
for i, word in enumerate(self.index2word):
self.vocab[word].index = i
def reset_from(self, other_model):
"""
Borrow shareable pre-built structures (like vocab) from the other_model. Useful
if testing multiple models in parallel on the same corpus.
"""
self.vocab = other_model.vocab
self.index2word = other_model.index2word
self.cum_table = other_model.cum_table
self.corpus_count = other_model.corpus_count
self.reset_weights()
def _do_train_job(self, sentences, alpha, inits):
"""
Train a single batch of sentences. Return 2-tuple `(effective word count after
ignoring unknown words and sentence length trimming, total word count)`.
"""
work, neu1 = inits
tally = 0
if self.sg:
tally += train_batch_sg(self, sentences, alpha, work)
else:
tally += train_batch_cbow(self, sentences, alpha, work, neu1)
return tally, self._raw_word_count(sentences)
def _raw_word_count(self, job):
"""Return the number of words in a given job."""
return sum(len(sentence) for sentence in job)
def train(self, sentences, total_words=None, word_count=0,
total_examples=None, queue_factor=2, report_delay=1.0):
"""
Update the model's neural weights from a sequence of sentences (can be a once-only generator stream).
For Word2Vec, each sentence must be a list of unicode strings. (Subclasses may accept other examples.)
To support linear learning-rate decay from (initial) alpha to min_alpha, either total_examples
(count of sentences) or total_words (count of raw words in sentences) should be provided, unless the
sentences are the same as those that were used to initially build the vocabulary.
"""
if FAST_VERSION < 0:
import warnings
warnings.warn("C extension not loaded for Word2Vec, training will be slow. "
"Install a C compiler and reinstall gensim for fast training.")
self.neg_labels = []
if self.negative > 0:
# precompute negative labels optimization for pure-python training
self.neg_labels = zeros(self.negative + 1)
self.neg_labels[0] = 1.
logger.info(
"training model with %i workers on %i vocabulary and %i features, "
"using sg=%s hs=%s sample=%s negative=%s",
self.workers, len(self.vocab), self.layer1_size, self.sg,
self.hs, self.sample, self.negative)
if not self.vocab:
raise RuntimeError("you must first build vocabulary before training the model")
if not hasattr(self, 'syn0'):
raise RuntimeError("you must first finalize vocabulary before training the model")
if total_words is None and total_examples is None:
if self.corpus_count:
total_examples = self.corpus_count
logger.info("expecting %i sentences, matching count from corpus used for vocabulary survey", total_examples)
else:
raise ValueError("you must provide either total_words or total_examples, to enable alpha and progress calculations")
job_tally = 0
if self.iter > 1:
sentences = utils.RepeatCorpusNTimes(sentences, self.iter)
total_words = total_words and total_words * self.iter
total_examples = total_examples and total_examples * self.iter
def worker_loop():
"""Train the model, lifting lists of sentences from the job_queue."""
work = matutils.zeros_aligned(self.layer1_size, dtype=REAL) # per-thread private work memory
neu1 = matutils.zeros_aligned(self.layer1_size, dtype=REAL)
jobs_processed = 0
while True:
job = job_queue.get()
if job is None:
progress_queue.put(None)
break # no more jobs => quit this worker
sentences, alpha = job
tally, raw_tally = self._do_train_job(sentences, alpha, (work, neu1))
progress_queue.put((len(sentences), tally, raw_tally)) # report back progress
jobs_processed += 1
logger.debug("worker exiting, processed %i jobs", jobs_processed)
def job_producer():
"""Fill jobs queue using the input `sentences` iterator."""
job_batch, batch_size = [], 0
pushed_words, pushed_examples = 0, 0
next_alpha = self.alpha
job_no = 0
for sent_idx, sentence in enumerate(sentences):
sentence_length = self._raw_word_count([sentence])
# can we fit this sentence into the existing job batch?
if batch_size + sentence_length <= self.batch_words:
# yes => add it to the current job
job_batch.append(sentence)
batch_size += sentence_length
else:
# no => submit the existing job
logger.debug(
"queueing job #%i (%i words, %i sentences) at alpha %.05f",
job_no, batch_size, len(job_batch), next_alpha)
#logger.debug(str(self['1']))
job_no += 1
job_queue.put((job_batch, next_alpha))
# update the learning rate for the next job
if self.min_alpha < next_alpha:
if total_examples:
# examples-based decay
pushed_examples += len(job_batch)
progress = 1.0 * pushed_examples / total_examples
else:
# words-based decay
pushed_words += self._raw_word_count(job_batch)
progress = 1.0 * pushed_words / total_words
next_alpha = self.alpha - (self.alpha - self.min_alpha) * progress
next_alpha = max(self.min_alpha, next_alpha)
# add the sentence that didn't fit as the first item of a new job
job_batch, batch_size = [sentence], sentence_length
# add the last job too (may be significantly smaller than batch_words)
if job_batch:
logger.debug(
"queueing job #%i (%i words, %i sentences) at alpha %.05f",
job_no, batch_size, len(job_batch), next_alpha)
job_no += 1
job_queue.put((job_batch, next_alpha))
if job_no == 0 and self.train_count == 0:
logger.warning(
"train() called with an empty iterator (if not intended, "
"be sure to provide a corpus that offers restartable "
"iteration = an iterable)."
)
# give the workers heads up that they can finish -- no more work!
for _ in xrange(self.workers):
job_queue.put(None)
logger.debug("job loop exiting, total %i jobs", job_no)
# buffer ahead only a limited number of jobs.. this is the reason we can't simply use ThreadPool :(
job_queue = Queue(maxsize=queue_factor * self.workers)
progress_queue = Queue(maxsize=(queue_factor + 1) * self.workers)
workers = [threading.Thread(target=worker_loop) for _ in xrange(self.workers)]
unfinished_worker_count = len(workers)
workers.append(threading.Thread(target=job_producer))
for thread in workers:
thread.daemon = True # make interrupting the process with ctrl+c easier
thread.start()
example_count, trained_word_count, raw_word_count = 0, 0, word_count
start, next_report = default_timer() - 0.00001, 1.0
while unfinished_worker_count > 0:
report = progress_queue.get() # blocks if workers too slow
if report is None: # a thread reporting that it finished
unfinished_worker_count -= 1
logger.info("worker thread finished; awaiting finish of %i more threads", unfinished_worker_count)
continue
examples, trained_words, raw_words = report
job_tally += 1
# update progress stats
example_count += examples
trained_word_count += trained_words # only words in vocab & sampled
raw_word_count += raw_words
# log progress once every report_delay seconds
elapsed = default_timer() - start
if elapsed >= next_report:
next_report = elapsed + report_delay
# all done; report the final stats
elapsed = default_timer() - start
logger.info(
"training on %i raw words (%i effective words) took %.1fs, %.0f effective words/s",
raw_word_count, trained_word_count, elapsed, trained_word_count / elapsed)
if job_tally < 10 * self.workers:
logger.warn("under 10 jobs per worker: consider setting a smaller `batch_words' for smoother alpha decay")
# check that the input corpus hasn't changed during iteration
if total_examples and total_examples != example_count:
logger.warn("supplied example count (%i) did not equal expected count (%i)", example_count, total_examples)
if total_words and total_words != raw_word_count:
logger.warn("supplied raw word count (%i) did not equal expected count (%i)", raw_word_count, total_words)
self.train_count += 1 # number of times train() has been called
self.total_train_time += elapsed
self.clear_sims()
return trained_word_count
# basics copied from the train() function
def score(self, sentences, total_sentences=int(1e6), chunksize=100, queue_factor=2, report_delay=1):
"""
Score the log probability for a sequence of sentences (can be a once-only generator stream).
Each sentence must be a list of unicode strings.
This does not change the fitted model in any way (see Word2Vec.train() for that)
Note that you should specify total_sentences; we'll run into problems if you ask to
score more than this number of sentences but it is inefficient to set the value too high.
See the article by [taddy]_ and the gensim demo at [deepir]_ for examples of how to use such scores in document classification.
.. [taddy] Taddy, Matt. Document Classification by Inversion of Distributed Language Representations, in Proceedings of the 2015 Conference of the Association of Computational Linguistics.
.. [deepir] https://github.com/TaddyLab/gensim/blob/deepir/docs/notebooks/deepir.ipynb
"""
if FAST_VERSION < 0:
import warnings
warnings.warn("C extension compilation failed, scoring will be slow. "
"Install a C compiler and reinstall gensim for fastness.")
logger.info(
"scoring sentences with %i workers on %i vocabulary and %i features, "
"using sg=%s hs=%s sample=%s and negative=%s",
self.workers, len(self.vocab), self.layer1_size, self.sg, self.hs, self.sample, self.negative)
if not self.vocab:
raise RuntimeError("you must first build vocabulary before scoring new data")
if not self.hs:
raise RuntimeError("we have only implemented score for hs")
def worker_loop():
"""Train the model, lifting lists of sentences from the jobs queue."""
work = zeros(1, dtype=REAL) # for sg hs, we actually only need one memory loc (running sum)
neu1 = matutils.zeros_aligned(self.layer1_size, dtype=REAL)
while True:
job = job_queue.get()
if job is None: # signal to finish
break
ns = 0
for sentence_id, sentence in job:
if sentence_id >= total_sentences:
break
if self.sg:
score = score_sentence_sg(self, sentence, work)
else:
score = score_sentence_cbow(self, sentence, work, neu1)
sentence_scores[sentence_id] = score
ns += 1
progress_queue.put(ns) # report progress
start, next_report = default_timer(), 1.0
# buffer ahead only a limited number of jobs.. this is the reason we can't simply use ThreadPool :(
job_queue = Queue(maxsize=queue_factor * self.workers)
progress_queue = Queue(maxsize=(queue_factor + 1) * self.workers)
workers = [threading.Thread(target=worker_loop) for _ in xrange(self.workers)]
for thread in workers:
thread.daemon = True # make interrupting the process with ctrl+c easier
thread.start()
sentence_count = 0
sentence_scores = matutils.zeros_aligned(total_sentences, dtype=REAL)
push_done = False
done_jobs = 0
jobs_source = enumerate(utils.grouper(enumerate(sentences), chunksize))
# fill jobs queue with (id, sentence) job items
while True:
try:
job_no, items = next(jobs_source)
if (job_no - 1) * chunksize > total_sentences:
logger.warning(
"terminating after %i sentences (set higher total_sentences if you want more).",
total_sentences)
job_no -= 1
raise StopIteration()
logger.debug("putting job #%i in the queue", job_no)
job_queue.put(items)
except StopIteration:
logger.info(
"reached end of input; waiting to finish %i outstanding jobs",
job_no - done_jobs + 1)
for _ in xrange(self.workers):
job_queue.put(None) # give the workers heads up that they can finish -- no more work!
push_done = True
try:
while done_jobs < (job_no + 1) or not push_done:
ns = progress_queue.get(push_done) # only block after all jobs pushed
sentence_count += ns
done_jobs += 1
elapsed = default_timer() - start
if elapsed >= next_report:
logger.info(
"PROGRESS: at %.2f%% sentences, %.0f sentences/s",
100.0 * sentence_count, sentence_count / elapsed)
next_report = elapsed + report_delay # don't flood log, wait report_delay seconds
else:
# loop ended by job count; really done
break
except Empty:
pass # already out of loop; continue to next push
elapsed = default_timer() - start
self.clear_sims()
logger.info(
"scoring %i sentences took %.1fs, %.0f sentences/s",
sentence_count, elapsed, sentence_count / elapsed)
return sentence_scores[:sentence_count]
def clear_sims(self):
self.syn0norm = None
def reset_weights(self):
"""Reset all projection weights to an initial (untrained) state, but keep the existing vocabulary."""
logger.info("resetting layer weights")
self.syn0 = empty((len(self.vocab), self.vector_size), dtype=REAL)
# randomize weights vector by vector, rather than materializing a huge random matrix in RAM at once
for i in xrange(len(self.vocab)):
# construct deterministic seed from word AND seed argument
#logger.info("algo raro %s", self.index2word[i])
self.syn0[i] = self.seeded_vector(self.index2word[i] + str(self.seed))
if self.hs:
self.syn1 = zeros((len(self.vocab), self.layer1_size), dtype=REAL)
if self.negative:
self.syn1neg = zeros((len(self.vocab), self.layer1_size), dtype=REAL)
self.syn0norm = None
self.syn0_lockf = ones(len(self.vocab), dtype=REAL) # zeros suppress learning
def seeded_vector(self, seed_string):
"""Create one 'random' vector (but deterministic by seed_string)"""
# Note: built-in hash() may vary by Python version or even (in Py3.x) per launch
once = random.RandomState(self.hashfxn(seed_string) & 0xffffffff)
return (once.rand(self.vector_size) - 0.5) / self.vector_size
def save_word2vec_format(self, fname, fvocab=None, binary=False):
"""
Store the input-hidden weight matrix in the same format used by the original
C word2vec-tool, for compatibility.
"""
if fvocab is not None:
logger.info("storing vocabulary in %s" % (fvocab))
with utils.smart_open(fvocab, 'wb') as vout:
for word, vocab in sorted(iteritems(self.vocab), key=lambda item: -item[1].count):
vout.write(utils.to_utf8("%s %s\n" % (word, vocab.count)))
logger.info("storing %sx%s projection weights into %s" % (len(self.vocab), self.vector_size, fname))
assert (len(self.vocab), self.vector_size) == self.syn0.shape
with utils.smart_open(fname, 'wb') as fout:
fout.write(utils.to_utf8("%s %s\n" % self.syn0.shape))
# store in sorted order: most frequent words at the top
for word, vocab in sorted(iteritems(self.vocab), key=lambda item: -item[1].count):
row = self.syn0[vocab.index]
if binary:
fout.write(utils.to_utf8(word) + b" " + row.tostring())
else:
fout.write(utils.to_utf8("%s %s\n" % (word, ' '.join("%f" % val for val in row))))
@classmethod
def load_word2vec_format(cls, fname, fvocab=None, binary=False, encoding='utf8', unicode_errors='strict'):
"""
Load the input-hidden weight matrix from the original C word2vec-tool format.
Note that the information stored in the file is incomplete (the binary tree is missing),
so while you can query for word similarity etc., you cannot continue training
with a model loaded this way.
`binary` is a boolean indicating whether the data is in binary word2vec format.
`norm_only` is a boolean indicating whether to only store normalised word2vec vectors in memory.
Word counts are read from `fvocab` filename, if set (this is the file generated
by `-save-vocab` flag of the original C tool).
If you trained the C model using non-utf8 encoding for words, specify that
encoding in `encoding`.
"""
counts = None
if fvocab is not None:
logger.info("loading word counts from %s", fvocab)
counts = {}
with utils.smart_open(fvocab) as fin:
for line in fin:
word, count = utils.to_unicode(line).strip().split()
counts[word] = int(count)
logger.info("loading projection weights from %s", fname)
with utils.smart_open(fname) as fin:
header = utils.to_unicode(fin.readline(), encoding=encoding)
vocab_size, vector_size = map(int, header.split()) # throws for invalid file format
result = cls(size=vector_size)
result.syn0 = zeros((vocab_size, vector_size), dtype=REAL)
def add_word(word, weights):
word_id = len(result.vocab)
if word in result.vocab:
logger.warning("duplicate word '%s' in %s, ignoring all but first", word, fname)
return
if counts is None:
# most common scenario: no vocab file given. just make up some bogus counts, in descending order
result.vocab[word] = Vocab(index=word_id, count=vocab_size - word_id)
elif word in counts:
# use count from the vocab file
result.vocab[word] = Vocab(index=word_id, count=counts[word])
else:
# vocab file given, but word is missing -- set count to None (TODO: or raise?)
logger.warning("vocabulary file is incomplete: '%s' is missing", word)
result.vocab[word] = Vocab(index=word_id, count=None)
result.syn0[word_id] = weights
result.index2word.append(word)
if binary:
binary_len = dtype(REAL).itemsize * vector_size
for line_no in xrange(vocab_size):
# mixed text and binary: read text first, then binary
word = []
while True:
ch = fin.read(1)
if ch == b' ':
break
if ch != b'\n': # ignore newlines in front of words (some binary files have)
word.append(ch)
word = utils.to_unicode(b''.join(word), encoding=encoding, errors=unicode_errors)
weights = fromstring(fin.read(binary_len), dtype=REAL)
add_word(word, weights)
else:
for line_no, line in enumerate(fin):
parts = utils.to_unicode(line.rstrip(), encoding=encoding, errors=unicode_errors).split(" ")
if len(parts) != vector_size + 1:
raise ValueError("invalid vector on line %s (is this really the text format?)" % (line_no))
word, weights = parts[0], list(map(REAL, parts[1:]))
add_word(word, weights)
if result.syn0.shape[0] != len(result.vocab):
logger.info(
"duplicate words detected, shrinking matrix size from %i to %i",
result.syn0.shape[0], len(result.vocab)
)
result.syn0 = ascontiguousarray(result.syn0[: len(result.vocab)])
assert (len(result.vocab), result.vector_size) == result.syn0.shape
logger.info("loaded %s matrix from %s" % (result.syn0.shape, fname))
return result
def intersect_word2vec_format(self, fname, binary=False, encoding='utf8', unicode_errors='strict'):
"""
Merge the input-hidden weight matrix from the original C word2vec-tool format
given, where it intersects with the current vocabulary. (No words are added to the
existing vocabulary, but intersecting words adopt the file's weights, and
non-intersecting words are left alone.)
`binary` is a boolean indicating whether the data is in binary word2vec format.
"""
overlap_count = 0
logger.info("loading projection weights from %s" % (fname))
with utils.smart_open(fname) as fin:
header = utils.to_unicode(fin.readline(), encoding=encoding)
vocab_size, vector_size = map(int, header.split()) # throws for invalid file format
if not vector_size == self.vector_size:
raise ValueError("incompatible vector size %d in file %s" % (vector_size, fname))
# TOCONSIDER: maybe mismatched vectors still useful enough to merge (truncating/padding)?
if binary:
binary_len = dtype(REAL).itemsize * vector_size