DeepVariant 0.4.0

0.4.0

This is the initial open source release of DeepVariant!

It includes a model trained on 9 replicates of NA12878 / HG001 as well as copies each downsampled at 50% coverage. In our tests this additional training data means DeepVariant can generalize to a wider variety of input sequencing data. This produced approximately 100 million training examples. We use the truth set v.3.3.2 from Genome in a Bottle for training. The underlying model is Inception V3.

See historical release notes for more details.