diff --git a/.gitattributes b/.gitattributes
index 502ced41a..ba848fc6e 100644
--- a/.gitattributes
+++ b/.gitattributes
@@ -1 +1 @@
-src/pynwb/_version.py export-subst
+src/hdmf/_version.py export-subst
diff --git a/.gitignore b/.gitignore
index 9e9206332..3dc49874d 100644
--- a/.gitignore
+++ b/.gitignore
@@ -31,7 +31,6 @@ __pycache__/
 # Sphinx documentation
 /docs/_build/
 /docs/build/
-/docs/source/pynwb.*.rst
 
 
 # setuptools
diff --git a/MANIFEST.in b/MANIFEST.in
index 33610f3c5..a8954b495 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -1,4 +1,4 @@
-include license.txt Legal.txt versioneer.py src/pynwb/_version.py
+include license.txt Legal.txt versioneer.py src/hdmf/_version.py
 include requirements.txt requirements-dev.txt requirements-doc.txt
 include test.py tox.ini