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Hi, I've been exploring your published model and find it very interesting. I attempted to run it with my data but encountered an error.
In my case, I'm working with sequences that contain multiple amino acid mutations. I changed the single_mutant flag in the read_experimental_data function within top_layer.py to false. This modification led to the following error:
Embeddings and labels are aligned
Traceback (most recent call last):
File "/media/dell/newdisk/EvolvePro-main/top_layer.py", line 355, in
df_test, df_all = top_layer(
File "/media/dell/newdisk/EvolvePro-main/top_layer.py", line 205, in top_layer
y_pred_test = model.predict(X_test)
File "/home/dell/anaconda3/lib/python3.9/site-packages/sklearn/ensemble/_forest.py", line 1064, in predict
X = self._validate_X_predict(X)
File "/home/dell/anaconda3/lib/python3.9/site-packages/sklearn/ensemble/_forest.py", line 641, in _validate_X_predict
X = self._validate_data(
File "/home/dell/anaconda3/lib/python3.9/site-packages/sklearn/base.py", line 633, in _validate_data
out = check_array(X, input_name="X", **check_params)
File "/home/dell/anaconda3/lib/python3.9/site-packages/sklearn/utils/validation.py", line 1026, in check_array
raise ValueError(
ValueError: Found array with 0 sample(s) (shape=(0, 1280)) while a minimum of 1 is required by RandomForestRegressor.
When I do not modify single_mutant to false, all the output results are 1. Could you help me resolve this issue?
Thank you for your assistance.
The text was updated successfully, but these errors were encountered:
Hi, Can you attach your input result csv file, so I can check the format. Also, is that aligned with the name column in your embedding files? if you can attach these two, then I can help debug this.
Hi, Can you attach your input result csv file, so I can check the format. Also, is that aligned with the name column in your embedding files? if you can attach these two, then I can help debug this.
Thank you for your response and reminder. I realized the error was due to not inputting the sequence needed for prediction, resulting in the absence of X_test. I have now resolved this issue and successfully run the model!
Hi, I've been exploring your published model and find it very interesting. I attempted to run it with my data but encountered an error.
In my case, I'm working with sequences that contain multiple amino acid mutations. I changed the single_mutant flag in the read_experimental_data function within top_layer.py to false. This modification led to the following error:
Embeddings and labels are aligned
Traceback (most recent call last):
File "/media/dell/newdisk/EvolvePro-main/top_layer.py", line 355, in
df_test, df_all = top_layer(
File "/media/dell/newdisk/EvolvePro-main/top_layer.py", line 205, in top_layer
y_pred_test = model.predict(X_test)
File "/home/dell/anaconda3/lib/python3.9/site-packages/sklearn/ensemble/_forest.py", line 1064, in predict
X = self._validate_X_predict(X)
File "/home/dell/anaconda3/lib/python3.9/site-packages/sklearn/ensemble/_forest.py", line 641, in _validate_X_predict
X = self._validate_data(
File "/home/dell/anaconda3/lib/python3.9/site-packages/sklearn/base.py", line 633, in _validate_data
out = check_array(X, input_name="X", **check_params)
File "/home/dell/anaconda3/lib/python3.9/site-packages/sklearn/utils/validation.py", line 1026, in check_array
raise ValueError(
ValueError: Found array with 0 sample(s) (shape=(0, 1280)) while a minimum of 1 is required by RandomForestRegressor.
When I do not modify single_mutant to false, all the output results are 1. Could you help me resolve this issue?
Thank you for your assistance.
The text was updated successfully, but these errors were encountered: