build.yml

name: Build and test, upload to PyPI on release

on: [push, pull_request]
env:
  CIBW_ENVIRONMENT_PASS_LINUX: PYTEST_TIMEOUT
  CIBW_TEST_COMMAND: "cd {project} && pip install --prefer-binary '.[test]' && python -m pytest -v tests"
  CIBW_SKIP: "cp36-*"
  PYTEST_TIMEOUT: 60
  MACOSX_DEPLOYMENT_TARGET: "10.9"

jobs:
  build_wheel_linux:
    name: Build wheels on Linux (${{ matrix.wheel_arch }})
    runs-on: ubuntu-20.04
    strategy:
      fail-fast: false
      matrix:
        wheel_arch: [x86_64, i686]

    steps:
      - uses: actions/checkout@v3
        with:
          submodules: true
          fetch-depth: 0

      - uses: actions/setup-python@v4
        name: Install Python
        with:
          python-version: '3.8'

      - name: Build wheels (manylinux)
        uses: pypa/cibuildwheel@v2.15.0
        env:
          CIBW_BEFORE_BUILD: "yum install -y flex bison libxml2-devel zlib-devel cairo-devel && pip install -U cmake pip wheel && python setup.py build_c_core"
          CIBW_BUILD: "*-manylinux_${{ matrix.wheel_arch }}"
          # Skip tests for Python 3.10 onwards because SciPy does not have
          # 32-bit wheels for Linux. Also skip tests for Python 3.12 until
          # NumPy 1.26 is out (with Python 3.12 wheels)
          CIBW_TEST_SKIP: "cp310-manylinux_i686 cp311-manylinux_i686 cp312-manylinux_i686 cp312-*"

      - name: Build wheels (musllinux)
        uses: pypa/cibuildwheel@v2.15.0
        env:
          CIBW_BEFORE_BUILD: "apk add flex bison libxml2-dev zlib-dev cairo-dev && pip install -U cmake pip wheel && python setup.py build_c_core"
          CIBW_BUILD: "*-musllinux_${{ matrix.wheel_arch }}"
          CIBW_TEST_COMMAND: "cd {project} && pip install --prefer-binary '.[test-musl]' && python -m pytest -v tests"

      - uses: actions/upload-artifact@v3
        with:
          path: ./wheelhouse/*.whl

  build_wheel_linux_aarch64_manylinux:
    name: Build wheels on Linux (aarch64/manylinux)
    runs-on: ubuntu-20.04
    if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
    steps:
      - uses: actions/checkout@v3
        with:
          submodules: true
          fetch-depth: 0

      - name: Set up QEMU
        id: qemu
        uses: docker/setup-qemu-action@v2

      - name: Build wheels (manylinux)
        uses: pypa/cibuildwheel@v2.14.1
        env:
          CIBW_BEFORE_BUILD: "yum install -y flex bison libxml2-devel zlib-devel cairo-devel && pip install -U cmake pip wheel && python setup.py build_c_core"
          CIBW_ARCHS_LINUX: aarch64
          CIBW_BUILD: "*-manylinux_aarch64"
          # Skip tests for Python 3.12 until NumPy 1.26 is out (with Python
          # 3.12 wheels)
          CIBW_TEST_SKIP: "cp312-*"

      - uses: actions/upload-artifact@v3
        with:
          path: ./wheelhouse/*.whl

  build_wheel_linux_aarch64_musllinux:
    name: Build wheels on Linux (aarch64/musllinux)
    runs-on: ubuntu-20.04
    if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
    steps:
      - uses: actions/checkout@v3
        with:
          submodules: true
          fetch-depth: 0

      - name: Set up QEMU
        id: qemu
        uses: docker/setup-qemu-action@v2

      - name: Build wheels (musllinux)
        uses: pypa/cibuildwheel@v2.14.1
        env:
          CIBW_BEFORE_BUILD: "apk add flex bison libxml2-dev zlib-dev cairo-dev && pip install -U cmake pip wheel && python setup.py build_c_core"
          CIBW_ARCHS_LINUX: aarch64
          CIBW_BUILD: "*-musllinux_aarch64"
          CIBW_TEST_COMMAND: "cd {project} && pip install --prefer-binary '.[test-musl]' && python -m pytest -v tests"
          # Skip tests for Python 3.12 until NumPy 1.26 is out (with Python
          # 3.12 wheels)
          CIBW_TEST_SKIP: "cp312-*"

      - uses: actions/upload-artifact@v3
        with:
          path: ./wheelhouse/*.whl

  build_wheel_macos:
    name: Build wheels on macOS (${{ matrix.wheel_arch }})
    runs-on: macos-latest
    env:
      LLVM_VERSION: "14.0.5"
    strategy:
      matrix:
        include:
          - cmake_arch: x86_64
            wheel_arch: x86_64
          - cmake_arch: arm64
            cmake_extra_args: -DF2C_EXTERNAL_ARITH_HEADER=../../../etc/arith_apple_m1.h -DIEEE754_DOUBLE_ENDIANNESS_MATCHES=ON
            wheel_arch: arm64

    steps:
      - uses: actions/checkout@v3
        with:
          submodules: true
          fetch-depth: 0

      - name: Cache installed C core
        id: cache-c-core
        uses: actions/cache@v3
        with:
          path: vendor/install
          key: C-core-cache-${{ runner.os }}-${{ matrix.cmake_arch }}-llvm${{ env.LLVM_VERSION }}-${{ hashFiles('.git/modules/**/HEAD') }}

      - name: Cache C core dependencies
        id: cache-c-deps
        uses: actions/cache@v3
        with:
          path: ~/local
          key: deps-cache-v2-${{ runner.os }}-${{ matrix.cmake_arch }}-llvm${{ env.LLVM_VERSION }}

      - uses: actions/setup-python@v4
        name: Install Python
        with:
          python-version: '3.8'

      - name: Install OS dependencies
        if: steps.cache-c-core.outputs.cache-hit != 'true' || steps.cache-c-deps.outputs.cache-hit != 'true' # Only needed when building the C core or libomp
        run:
          brew install ninja autoconf automake libtool cmake

      - name: Install OpenMP library
        if: steps.cache-c-deps.outputs.cache-hit != 'true'
        run: |
          wget https://github.com/llvm/llvm-project/releases/download/llvmorg-$LLVM_VERSION/openmp-$LLVM_VERSION.src.tar.xz
          tar xf openmp-$LLVM_VERSION.src.tar.xz
          cd openmp-$LLVM_VERSION.src
          mkdir build && cd build
          cmake .. -DCMAKE_INSTALL_PREFIX=$HOME/local -DLIBOMP_ENABLE_SHARED=OFF -DCMAKE_OSX_ARCHITECTURES=${{ matrix.cmake_arch }}
          cmake --build .
          cmake --install .

      - name: Build wheels
        uses: pypa/cibuildwheel@v2.14.1
        env:
          CIBW_ARCHS_MACOS: "${{ matrix.wheel_arch }}"
          CIBW_BEFORE_BUILD: "python setup.py build_c_core"
          CIBW_ENVIRONMENT: "LDFLAGS=-L$HOME/local/lib"
          IGRAPH_CMAKE_EXTRA_ARGS: -DCMAKE_OSX_ARCHITECTURES=${{ matrix.cmake_arch }} ${{ matrix.cmake_extra_args }} -DCMAKE_PREFIX_PATH=$HOME/local
          # Skip tests for Python 3.12 until NumPy 1.26 is out (with Python
          # 3.12 wheels)
          CIBW_TEST_SKIP: "cp312-*"

      - uses: actions/upload-artifact@v3
        with:
          path: ./wheelhouse/*.whl

  build_wheel_wasm:
    name: Build wheels for WebAssembly
    runs-on: ubuntu-20.04
    
    steps:
      - uses: actions/checkout@v3
        with:
          submodules: true
          fetch-depth: 0

      - uses: actions/setup-python@v4
        name: Install Python
        with:
          python-version: '3.11.2'

      - uses: mymindstorm/setup-emsdk@v12
        with:
          version: '3.1.32'
          actions-cache-folder: 'emsdk-cache'

      - name: Build wheel
        run: |
          pip install pyodide-build==0.23.4
          pyodide build

      - uses: actions/upload-artifact@v3
        with:
          path: ./dist/*.whl

  build_wheel_win:
    name: Build wheels on Windows (${{ matrix.cmake_arch }})
    runs-on: windows-2019
    strategy:
      matrix:
        include:
          - cmake_arch: Win32
            wheel_arch: win32
            vcpkg_arch: x86
          - cmake_arch: x64
            wheel_arch: win_amd64
            vcpkg_arch: x64

    steps:
      - uses: actions/checkout@v3
        with:
          submodules: true
          fetch-depth: 0

      - uses: actions/setup-python@v4
        name: Install Python
        with:
          python-version: '3.8'

      - name: Cache installed C core
        id: cache-c-core
        uses: actions/cache@v3
        with:
          path: vendor/install
          key: C-core-cache-${{ runner.os }}-${{ matrix.cmake_arch }}-${{ hashFiles('.git/modules/**/HEAD') }}

      - name: Cache VCPKG
        uses: actions/cache@v3
        with:
          path: C:/vcpkg/installed/
          key: vcpkg-${{ runner.os }}-${{ matrix.vcpkg_arch }}

      - name: Install build dependencies
        if: steps.cache-c-core.outputs.cache-hit != 'true' # Only needed when building the C core
        run: choco install winflexbison3 ninja

      - name: Install VCPKG libraries
        run: |
          %VCPKG_INSTALLATION_ROOT%\vcpkg.exe integrate install
          %VCPKG_INSTALLATION_ROOT%\vcpkg.exe install libxml2:${{ matrix.vcpkg_arch }}-windows-static-md
        shell: cmd

      - name: Build wheels
        uses: pypa/cibuildwheel@v2.14.1
        env:
          CIBW_BEFORE_BUILD: "python setup.py build_c_core"
          CIBW_BUILD: "*-${{ matrix.wheel_arch }}"
          CIBW_TEST_COMMAND: "cd /d {project} && pip install --prefer-binary \".[test]\" && python -m pytest tests"
          # Skip tests for Python 3.10 onwards because SciPy does not have
          # 32-bit wheels for Windows. Also skip tests for Python 3.12 until
          # NumPy 1.26 is out (with Python 3.12 wheels)
          CIBW_TEST_SKIP: "cp310-win32 cp311-win32 cp312-win32 cp312-*"
          IGRAPH_CMAKE_EXTRA_ARGS: -DCMAKE_BUILD_TYPE=RelWithDebInfo -DVCPKG_TARGET_TRIPLET=${{ matrix.vcpkg_arch }}-windows-static-md -DCMAKE_TOOLCHAIN_FILE=c:/vcpkg/scripts/buildsystems/vcpkg.cmake -A ${{ matrix.cmake_arch }}
          IGRAPH_EXTRA_LIBRARY_PATH: C:/vcpkg/installed/${{ matrix.vcpkg_arch }}-windows-static-md/lib/
          IGRAPH_STATIC_EXTENSION: True
          IGRAPH_EXTRA_LIBRARIES: libxml2,lzma,zlib,iconv,charset
          IGRAPH_EXTRA_DYNAMIC_LIBRARIES: wsock32,ws2_32

      - uses: actions/upload-artifact@v3
        with:
          path: ./wheelhouse/*.whl

  build_sdist:
    name: Build sdist and test extra dependencies
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
        with:
          submodules: true
          fetch-depth: 0

      - name: Cache installed C core
        id: cache-c-core
        uses: actions/cache@v3
        with:
          path: |
            vendor/install
          key: C-core-cache-${{ runner.os }}-${{ hashFiles('.git/modules/**/HEAD') }}

      - name: Install OS dependencies
        if: steps.cache-c-core.outputs.cache-hit != 'true' # Only needed when building the C core
        run:
          sudo apt install ninja-build cmake flex bison

      - uses: actions/setup-python@v4
        name: Install Python
        with:
          python-version: '3.8'

      - name: Build sdist
        run: |
          python setup.py build_c_core
          python setup.py sdist
          python setup.py install

      - name: Test
        run: |
          pip install --prefer-binary cairocffi numpy scipy pandas networkx pytest pytest-timeout
          python -m pytest -v tests

      - uses: actions/upload-artifact@v3
        with:
          path: dist/*.tar.gz

  # When updating 'runs-on', the ASan/UBSan library paths/versions must also be updated for LD_PRELOAD
  # for the "Test" step below.
  build_with_sanitizer:
    name: Build with sanitizers for debugging purposes
    runs-on: ubuntu-20.04
    env:
      IGRAPH_CMAKE_EXTRA_ARGS: -DFORCE_COLORED_OUTPUT=ON
    steps:
      - uses: actions/checkout@v3
        with:
          submodules: true
          fetch-depth: 0
          
      - name: Cache installed C core
        id: cache-c-core
        uses: actions/cache@v3
        with:
          path: |
            vendor/build
            vendor/install
          key: C-core-build-sanitizer-v1-${{ runner.os }}-${{ hashFiles('.git/modules/vendor/source/igraph/HEAD') }}

      - name: Install OS dependencies
        if: steps.cache-c-core.outputs.cache-hit != 'true' # Only needed when building the C core
        run:
          sudo apt install ninja-build cmake flex bison

      - uses: actions/setup-python@v4
        name: Install Python
        with:
          python-version: '3.11'

      - name: Build C core
        env:
          IGRAPH_USE_SANITIZERS: 1
        run: |
          python setup.py build_c_core

      - name: Build and install Python extension
        env:
          IGRAPH_USE_SANITIZERS: 1
        run: |
          # NOTE: install calls "build" first
          python setup.py install

      - name: Install test dependencies
        run: |
          pip install --prefer-binary pytest pytest-timeout

      # Only pytest, and nothing else should be run in this section due to the presence of LD_PRELOAD.
      # The ASan/UBSan library versions need to be updated when switching to a newer Ubuntu/GCC.
      # LD_PRELOAD needs to be specified in the "run" section to ensure that we
      # do not pick up memory leaks in the wrapper shell (e.g., /bin/bash)
      - name: Test
        env:
          ASAN_OPTIONS: "detect_stack_use_after_return=1"
          LSAN_OPTIONS: "suppressions=etc/lsan-suppr.txt:print_suppressions=false"
        run: |
          LD_PRELOAD=/lib/x86_64-linux-gnu/libasan.so.5:/lib/x86_64-linux-gnu/libubsan.so.1 python -m pytest --capture=sys tests