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Changelog

1.2.0 (2024-10-10)

  • Release: version 1.2.0 🚀 [jkobject]

  • Debug. [jkobject]

  • Merge pull request #7 from mossjacob/main. [Jérémie Kalfon]

    Fix _index and HGNC symbol indexing

  • Delete mapped and use lamin. [Jacob Moss]

  • Remove strange line which limits genes to those with no hgnc symbol. [Jacob Moss]

  • Fix _index. [Jacob Moss]

  • Update README.md. [Jérémie Kalfon]

  • Additional. [jkobject]

  • Trying out something else. [jkobject]

  • Continue on error. [jkobject]

  • Fix. [jkobject]

  • Needed something else and it is all good. [jkobject]

  • New test. [jkobject]

  • Now to be tested. [jkobject]

  • Update uv. [jkobject]

1.1.4 (2024-09-16)

1.1.3 (2024-09-04)

  • Release: version 1.1.3 🚀 [jkobject]
  • Release should be good to go. [jkobject]

1.1.2 (2024-09-04)

  • Release: version 1.1.2 🚀 [jkobject]
  • Release. [jkobject]

1.1.1 (2024-09-04)

  • Release: version 1.1.1 🚀 [jkobject]
  • Nothing really. [jkobject]

1.1.0 (2024-09-04)

  • Release: version 1.1.0 🚀 [jkobject]
  • Latest lamindb. [jkobject]
  • Debugged. [jkobject]
  • Better linting. [jkobject]
  • Debug ontology loading. [jkobject]
  • Nothing really. [jkobject]
  • Release: version 1.0.5 🚀 [jkobject]
  • Release: version 1.0.4 🚀 [jkobject]

1.0.5 (2024-08-14)

  • Release: version 1.0.5 🚀 [jkobject]
  • Release: version 1.0.4 🚀 [jkobject]

1.0.4 (2024-08-14)

  • Release: version 1.0.4 🚀 [jkobject]
  • Debug gene_df. [jkobject]

1.0.3 (2024-08-14)

  • Release: version 1.0.3 🚀 [jkobject]
  • Debug scdataloader. [jkobject]
  • Update README.md. [Jérémie Kalfon]
  • Adding poetry. [jkobject]
  • Adding tests. [jkobject]
  • Merge branch 'main' of https://github.com/jkobject/scDataLoader into main. [jkobject]
  • Add utils. [jkobject]
  • Debug. [jkobject]
  • Adding tests. [jkobject]
  • Details on lamindb. [jkobject]
  • Tiny doc change. [jkobject]
  • Small update. [jkobject]

1.0.1 (2024-08-06)

  • Release: version 1.0.1 🚀 [jkobject]
  • Cleanup and making a release. [jkobject]

1.0.0 (2024-08-06)

  • Release: version 1.0.0 🚀 [jkobject]
  • Release: version 🚀 [jkobject]
  • Cleanup. [jkobject]
  • Debug lamin connection. [jkobject]
  • Bypass attr. [jkobject]
  • No weight scaler. [maestro-jk]
  • Improvement in collator and some refact. [maestro-jk]
  • Multi thread debug. [maestro-jk]
  • Making a predict dataloader. [maestro-jk]
  • Tiny side cases. [jkobject]
  • Merge branch 'main' of https://github.com/jkobject/scDataLoader. [maestro-jk]
  • Making it faster and a tiny debug. [jkobject]
  • Better collator with a setup. [maestro-jk]
  • Merge branch 'main' of https://github.com/jkobject/scDataLoader. [maestro-jk]
  • Add some capabilities. [jkobject]
  • Removing pdbs. [maestro-jk]
  • Merge branch 'main' of https://github.com/jkobject/scDataLoader. [maestro-jk]
  • Merge branch 'main' of https://github.com/jkobject/scDataLoader into main. [jkobject]
  • Cleanup. [jkobject]
  • Decrease prints. [maestro-jk]
  • Works. [maestro-jk]
  • Tiny debug. [maestro-jk]
  • Merge branch 'main' of https://github.com/jkobject/scDataLoader. [maestro-jk]
  • Tiny debug with the update. [jkobject]
  • Quick to remove. [maestro-jk]
  • Update mapped with new lamindb version. [jkobject]
  • Update mapped with new lamindb version. [jkobject]

0.4.0 (2024-04-03)

  • Merge branch 'main' of https://github.com/jkobject/scDataLoader into main. [jkobject]

  • Merge pull request #5 from jkobject/dependabot/github_actions/softprops/action-gh-release-2. [Jérémie Kalfon]

    Bump softprops/action-gh-release from 1 to 2

  • Bump softprops/action-gh-release from 1 to 2. [dependabot[bot]]

    Bumps softprops/action-gh-release from 1 to 2.

    updated-dependencies:

    • dependency-name: softprops/action-gh-release dependency-type: direct:production update-type: version-update:semver-major ...

  • Release: version 0.7.0 🚀 [jkobject]

  • Merge branch 'dev' into main. [jkobject]

  • Debug to test. [jkobject]

  • Merge branch 'dev' of https://github.com/jkobject/scDataLoader into dev. [jkobject]

  • Commit of current last 3 runs. [maestro-jk]

  • Final improv of preprocess. [jkobject]

  • Debug dataloader post update to the dataset. [maestro-jk]

  • Updating the loading of hundreds of dataset as I go. [jkobject]

  • Loads of preprocessing debug. [jkobject]

  • Making it work for multiple species and debugging loading. [jkobject]

  • Dbug. [jkobject]

  • Debug. [maestro-jk]

  • Tiny debug. [jkobject]

  • Putting things into config and adding something to .mapped() [jkobject]

  • Merge branch 'dev' of https://github.com/jkobject/scDataLoader into dev. [jkobject]

  • Merge branch 'dev' of https://github.com/jkobject/scDataLoader into dev. [maestro-jk]

  • More typings. [maestro-jk]

  • Debug. [jkobject]

  • Debugs to the doc. [jkobject]

  • Building the docs. [jkobject]

  • Finishing the documentation. [jkobject]

  • Review, debug and improvement of the dataloader. [jkobject]

  • Random expressed instead? [jkobject]

  • Merge. [maestro-jk]

  • Some debugs when using different params. [jkobject]

  • Freaking debug. [jkobject]

  • Faster preprocess. [jkobject]

  • Looking into .mapped. [maestro-jk]

  • Improving collator, adding preprocess of more datasets. [jkobject]

  • Adding notebooks. [jkobject]

  • Wip. [jkobject]

  • Updating lamindb. [jkobject]

  • Update README.md. [Jérémie Kalfon]

  • Adding ability for fully offline. [maestro-jk]

  • Update index.md. [Jérémie Kalfon]

  • Update README.md. [Jérémie Kalfon]

  • Updating lamindb. [jkobject]

  • Merge branch 'dev' into main. [jkobject]

  • Cleanup module. [jkobject]

  • More debugs of scDataLoader. [jkobject]

  • Debugs of encoders. [jkobject]

  • Update to map, docstring, and simple AnnDataset. [jkobject]

  • Dataloader debug for hierarchical classes. [jkobject]

  • Debug issue in pyproject. [jkobject]

  • Update README.md. [Jérémie Kalfon]

0.3.0 (2024-01-09)

  • Update README.md. [Jérémie Kalfon]

  • Update README.md. [Jérémie Kalfon]

  • Remove useless functions. [jkobject]

  • Forgot the dataloader. [jkobject]

  • Some more info. [jkobject]

  • Update README.md. [Jérémie Kalfon]

  • Update lock file. [jkobject]

  • Poetry setup. [jkobject]

  • Debug. [jkobject]

  • Finish doc. [jkobject]

  • Debug. [jkobject]

  • Add new name. [jkobject]

  • Release: version 🚀 [jkobject]

  • More deps. [jkobject]

  • Debug. [jkobject]

  • Debug linter. [jkobject]

  • Bump actions/setup-python from 4 to 5. [dependabot[bot]]

    Bumps actions/setup-python from 4 to 5.

    updated-dependencies:

    • dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-major ...

  • Release: version 🚀 [jkobject]

  • Update. [jkobject]

  • Release: version 🚀 [jkobject]

  • Update LICENSE. [Jérémie Kalfon]

  • Prevent issue. [jkobject]

  • Finish cleanup. [jkobject]

  • Creating the dataloader. [jkobject]

  • Merge pull request #1 from jkobject/dependabot/github_actions/actions/checkout-4. [Jérémie Kalfon]

    Bump actions/checkout from 3 to 4

  • ✅ Ready to clone and code. [dependabot[bot]]

  • Bump actions/checkout from 3 to 4. [dependabot[bot]]

    Bumps actions/checkout from 3 to 4.

    updated-dependencies:

    • dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-major ...

  • Merge pull request #2 from jkobject/dependabot/github_actions/stefanzweifel/git-auto-commit- action-5. [Jérémie Kalfon]

    Bump stefanzweifel/git-auto-commit-action from 4 to 5

  • ✅ Ready to clone and code. [dependabot[bot]]

  • Bump stefanzweifel/git-auto-commit-action from 4 to 5. [dependabot[bot]]

    Bumps stefanzweifel/git-auto-commit-action from 4 to 5.

    updated-dependencies:

    • dependency-name: stefanzweifel/git-auto-commit-action dependency-type: direct:production update-type: version-update:semver-major ...

  • ✅ Ready to clone and code. [jkobject]

  • Initial commit. [Jérémie Kalfon]