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Hi, I am trying to use infercna as an alternative to infercnv and copykat as I need a faster cnv caller for my large integrated dataset (200,000+ cells).
Hi, I am trying to use infercna as an alternative to infercnv and copykat as I need a faster cnv caller for my large integrated dataset (200,000+ cells).
I installed your package using this code:
After following the vignette, and successfully running infercna, I am getting an error when I try to run cnaPlot:
Also, when I try to run findMalignant using this code:
So there must be an issue with the scalop package? Has anyone resolved this?
Best wishes,
Constantinos
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