Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Cannot install scalop #5

Open
fieldima opened this issue Apr 28, 2023 · 6 comments
Open

Cannot install scalop #5

fieldima opened this issue Apr 28, 2023 · 6 comments

Comments

@fieldima
Copy link

I am trying to install your other package, infercna, which is dependent on this package, scalop. But I keep running into this error:

nd.c:24:10: fatal error: S.h: No such file or directory
24 | #include "S.h"
| ^~~~~

I see there was a previous issue about this same problem that hasn't been solved, are there any updates?

@ghost
Copy link

ghost commented Jun 2, 2023

@fieldima Identical problem. Have been working on this for 2 hours. Installed entirely new version of R, fortran, etc. @jlaffy any updates?

@ghost
Copy link

ghost commented Jun 2, 2023

@fieldima did you have any luck? At this point I could've written the functionality myself in less time.

@HeikoZhang1122
Copy link

I successfully installed this package, after installing "Homo.sapiens" package via Biocmanager

@ABU-TO
Copy link

ABU-TO commented Sep 1, 2023

nd.c:24:10: fatal error: S.h: No such file or directory
24 | #include "S.h"
| ^~~~~
compilation terminated.
make: *** [{####}/anaconda3/envs/R_423/lib/R/etc/Makeconf:171: nd.o] Error 1
ERROR: compilation failed for package ‘scalop’

  • removing ‘{####}/anaconda3/envs/R_423/lib/R/library/scalop’
    Warning message:
    In i.p(...) :
    安装程序包‘/tmp/Rtmp0Ay16n/file6a9447fad5e8/scalop_1.1.0.tar.gz’时退出狀態的值不是0

/

same error in R 4.2.3
need your help!!!

@dcy-Sundar
Copy link

nd.c:24:10: fatal error: S.h: No such file or directory 24 | #include "S.h" | ^~~~~ compilation terminated. make: *** [{####}/anaconda3/envs/R_423/lib/R/etc/Makeconf:171: nd.o] Error 1 ERROR: compilation failed for package ‘scalop’

  • removing ‘{####}/anaconda3/envs/R_423/lib/R/library/scalop’
    Warning message:
    In i.p(...) :
    安装程序包‘/tmp/Rtmp0Ay16n/file6a9447fad5e8/scalop_1.1.0.tar.gz’时退出狀態的值不是0

/

same error in R 4.2.3 need your help!!!

I have the same error with you!!! Did you find a solution?

@yeswzc
Copy link

yeswzc commented May 22, 2024

I have the same issue and found this seems should work but it didn't work after I tried using M2 chip apple Mac.

But the author provided this:
BiocManager::install("Homo.sapiens")
BiocManager::install("jpmam1/scalop")
which I can install succesfully.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

5 participants