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library(sveval)
merged_vcf <- "/home/merged_output.vcf"
## read VCF
svs.gr <- readSVvcf.multisamps(merged_vcf)
## cluster similar SVs into SV sites
sv.sites <- clusterSVs(svs.gr)
## make matrix of allele counts for each sample and each SV site
ac.mat <- countAlleles(merged_vcf, sv.sites)
#Erreur dans countAlleles(merged_vcf, sv.sites) : sv.sites is not a list
The text was updated successfully, but these errors were encountered:
The text was updated successfully, but these errors were encountered: